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אפריל 27, 2017

  • Date:17שנייוני 2019

    SERGIO LOMBROSO AWARD IN CANCER RESEARCH CEREMONY AND SYMPOSIUM

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    שעה
    09:00 - 09:00
    מיקום
    מרכז כנסים על-שם דויד לופאטי
    צרו קשר
    הרצאה
  • Date:17שנייוני 2019

    SERGIO LOMBROSO AWARD IN CANCER RESEARCH CEREMONY AND SYMPOSIUM

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    שעה
    09:00 - 12:00
    מיקום
    מרכז כנסים על-שם דויד לופאטי
    מארגן
    המחלקה לביולוגיה מולקולרית של התא
    צרו קשר
    הרצאה
  • Date:17שנייוני 2019

    Brain control and readout at biologically relevant resolutions

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    שעה
    11:00 - 11:00
    מיקום
    בניין ע"ש מקס ולילאן קנדיוטי
    מרצהDr. Or Shemesh
    Postdoctoral Fellow, MIT Media lab and McGovern Institute for Brain Research, MIT
    מארגן
    המחלקה למדעי המוח
    צרו קשר
    תקצירShow full text abstract about Understanding the neural basis of behavior requires studying...»
    Understanding the neural basis of behavior requires studying the activity of neural networks. Within a neural network, single neurons can have different firing properties, different neural codes and different synaptic counterparts. Therefore, it will be useful to readout from the brain and control it at a single-cell resolution. However, until recently, single cell readout and control in the brain were not feasible. The first scientific problem we addressed, is this regard, was the low spatial resolution of light based neural activation. Opsins are genetically encoded light switches for neurons that cause neural firing, or inhibition, when illuminated (and are therefore called “opto-genetic” molecules). However, optogenetic experiments are biased by ‘crosstalk’: the accidental stimulation of dozens of cells other than the cell of interest during neuron photostimulation. This is caused by expression of optogenetic molecules through the entirety of the cells, from the round cell body (“soma”) to the elongated neural processes. Our solution was molecular-focusing: by limiting the powerful opsin CoChR to the cell body of the neuron, we discovered that we could excite the cell body of interest alone. This molecule, termed “somatic-CoChR” was stimulated with state of the art holographic stimulation to enable millisecond temporal control which can emulate actual brain activity. Thus, we achieved for the first time single cell optogenteic stimulation at sub millisecond temporal precision. A second challenge was imaging the activity of multiple cells at a single cell resolution. The most popular neural activity indicator is the genetically encoded calcium sensor GCaMP, due to its optical brightness and high sensitivity. However, the fluorescent signal originating from a cell body is contaminated with multiple other fluorescent signals that originate from neurites of neighboring cells. This leads to a variety of artifacts including non-physiological correlation between cells and an impaired ability to distinguish between signals coming from different cells. To solve this, we made a cell body-targeted GCaMP. We screened over 30 different targeting motifs for somatic localization of GCaMP, and termed the best one, in terms of somatic localization, “SomaGCaMP”. This molecule was tested in live mice and zebrafish and can report the activity of thousands of neurons at a single cell resolution. A third challenge was voltage imaging in the brain, since genetically encoded indicators still suffered from either low sensitivity, or from low brightness. To record voltage, we used nitrogen vacancy nanodiamonds, known to be both very bright and sensitive to electric fields. Our aim was to bring the nanodiamonds to the membrane so the large electric field created by the action potential could impinge upon them and change their fluorescence. By making the nanodiamonds hydrophobic through surface chemistry modification, and inserting them into micelles, we labeled neural membranes with monodisperse diamonds for hours. We are now in the process of assessing the sensitivity of the nanodiamonds to the membrane voltage.
    Altogether, thinking backwards from fundamental limitations in neuroscience is instrumental in deriving strategies to fix these limitations and study the brain. In the future, we will use similar approaches to study and heal brain disease, at single-cell and subcellular resolutions.
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  • Date:17שנייוני 2019

    IMM Guest seminar- Dr. Shai Bel will lecture on "Novel Defense Mechanisms in the Intestine".

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    שעה
    13:00 - 14:00
    מיקום
    בניין וולפסון למחקר ביולוגי
    מרצהDr. Shai Bel
    Dr. Shai Bel, Ph.D, Principal Investigator Faculty of Medicine, Bar-Ilan University
    מארגן
    המחלקה לאימונולוגיה מערכתית
    צרו קשר
    הרצאה
  • Date:17שנייוני 2019

    Externally and internally induced arousal states modify spontaneous and evoked synaptic activities in the mouse somatosensory cortex

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    שעה
    13:30 - 13:30
    מיקום
    בניין ארתור ורושל בלפר למחקר ביורפואי
    מרצהAkiva Rapaport (PhD Thesis Defense)
    Ilan Lampl Lab, Dept of Neurobiology, WIS
    מארגן
    המחלקה למדעי המוח
    צרו קשר
    תקצירShow full text abstract about Behavioral states, such as arousal and attention are defined...»
    Behavioral states, such as arousal and attention are defined by a set of psychological and physiological variables. They have profound effects on sensation, perception, learning, and cognition. In the brain, global states are characterized by distinct cortical and hippocampal EEG patterns. These changes that are clearly observed in the local field potential (LFP) are also evident in network and cellular dynamics. At the population level, the more active states are manifested as asynchronous neuronal firing between neighboring cells. At the cellular level, the membrane potential during active states is characterized by a continuous depolarized state, high synaptic ac! tivity, reduced variance and reduced membrane potential correlations between cells. In recent years it has been demonstrated in rodents that pupil size is a robust indicator of a range of neural activity from neuromodulator release to cortical neuronal membrane potential.
    There has been some debate in the field regarding to what extent the effects of locomotion on cortical dynamics are due to arousal and what can be attributed to locomotion. Furthermore, in some studies cortical dynamics were evaluated while the animals transitioned spontaneously between states and in others, states of arousal were externally induced. Additionally, different effects have been reported in the auditory and visual cortex. Therefore, we wanted to more finely differentiate between different states and evaluate the effect of state on the somatosensory cortex.
    To accomplish this we conducted intracellular recordings in the barrel cortex as well as extracellular LFP recordings in Layer IV of the barrel cortex in awake head fixed mice. We monitored pupil size as an indicator for state of arousal as well as tracking locomotion.
    We found that there is a significant correlation between membrane potential of cells in barrel cortex and pupil size. Neurons were significantly more depolarized as the animal was in a greater state of arousal. This change was not affected by the mode of inducement of arousal, be it a spontaneous transition into a state of arousal or one externally induced. However, the effect was abolished by the occurrence of locomotion.
    We also found that responses to sensory stimuli are increased during a state of arousal but not in a state of hyper-arousal. Inducing the state externally minimized this effect and if the animal is locomoting then the increase in sensory responses is abolished.
    We further found that when the animal is in a greater state of arousal there is less synchronization as indicated by the decrease in correlation between membrane potential and LFP. Even more startlingly, we found that the polarity of the cross-correlation was reversed during hyperarousal. This would strongly suggest a reorganization of the laminar network across different states.

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  • Date:17שנייוני 2019

    Life Science Colloquium

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    שעה
    14:00 - 15:00
    כותרת
    Phase separation in biochemistry and disease
    מיקום
    אולם ע"ש דולפי ולולה אבנר
    מרצהProf. Anthony Hyman
    Max Planck Institute of Molecular Cell Biology and Genetics
    צרו קשר
    סימפוזיונים
  • Date:17שנייוני 2019

    Environmental affordances and the neural representation of complex space

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    שעה
    16:00 - 17:00
    מיקום
    בניין לחקר המוח על-שם נלה וליאון בנוזיו
    מרצהProf. Kate Jeffery
    University College London
    מארגן
    המחלקה למדעי המוח
    צרו קשר
    הרצאה
  • Date:18שלישייוני 2019

    RNASEQ Predicts Major Breast Cancer Subtype and Potential to Respond to Cancer Immunotherapy.

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    שעה
    10:00 - 10:30
    מיקום
    בניין לביוכימיה על שם נלה וליאון בנוזיו
    מרצהDr. Daniel Harari
    Department of Biomolecular Sciences-WIS
    מארגן
    המחלקה למדעים ביומולקולריים
    צרו קשר
    תקצירShow full text abstract about Breast cancer (BC) divides into three major subtypes. 1) Es...»
    Breast cancer (BC) divides into three major subtypes. 1) Estrogen/Progesterone Receptor positive (ER+ve), 2) ErbB2/Her2 genome amplified (Her2+), and for cancers exhibiting none of these markers, triple negative breast cancer (TNBC). These classifications defined by histo-pathologists have important ramifications as they indicate alternative therapy options best suited to treat a given patient.
    We have used high throughput transcriptomic data from > 1000 breast cancer biopsies derived from The Cancer Genome Atlas (TCGA) and demonstrate that RNASEQ can with high fidelity subcategorize BC into one of these three major subgroups. Surprisingly, we found that three levels of ErbB2 expression ErbBLOW, ErbB2MED and ErbB2HIGH closely correlate with TNBC, ER+ and HER+ tumor subtypes respectively, a finding not paralleled by genome copy-number alone. Pathway analyses of differentially expressed genes demonstrated that TNBCs are particularly enriched for “Lymphocyte Activation” correlating with “chemotaxis”, “NK-cell activation” and “IFN-gamma signaling”. These immune-related gene signatures may provide an additional layer of clinically-relevant patient information as others have reported that T-cell infiltration into tumors indicate potential good response to cancer immunotherapy (e.g. Anti-PD1, Anti-CTLA4 drugs). We can use these transcriptomic immune signatures to determine their level of expression in individual patients, thus providing context for predicting response to immunotherapy in personalized medicinal manner.
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  • Date:18שלישייוני 2019

    Learning how to make new β cells: molecular mechanisms underlying reprogramming of exocrine pancreas cells into insulin-producing β cells

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    שעה
    10:30 - 11:00
    מיקום
    בניין לביוכימיה על שם נלה וליאון בנוזיו
    מרצהDr. Ofer Elhanani
    Members - Dept. of Biomolecular Sciences-WIS
    מארגן
    המחלקה למדעים ביומולקולריים
    צרו קשר
    תקצירShow full text abstract about Diabetes is a life-threatening disease caused by insufficien...»
    Diabetes is a life-threatening disease caused by insufficient circulating insulin, a key metabolic hormone produced by pancreatic β cells. A promising approach to diabetes treatment is cell replacement therapy, yet this is currently limited by shortage of donor β cells. To address this, direct reprogramming of somatic non-β cells has been suggested as a potential source of β cells. The goal of this research is to clarify the molecular mechanisms involved in the process of reprogramming to β cells. We developed and characterized an in vitro system for reprogramming of primary mouse pancreatic acinar cells to β-like cells. Reprogrammed cells exhibit many similarities to native β-cells. Furthermore, this system allowed the identification of the transcriptional repressor REST (RE-1 silencing transcription factor) as a novel regulator of reprogramming which acts by modifying the chromatin around endocrine gene enhancers, thereby altering accessibility and function of endocrine transcription factors. Improved understanding of the mechanisms underlying reprogramming are essential to permit its application in the future for regenerative and cell therapy-based treatment of diabetes.
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  • Date:18שלישייוני 2019

    Highly resolved expression programs revealed by single-cell RNA-seq of a large virus infecting a bloom-forming alga

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    שעה
    11:30 - 12:30
    מיקום
    בניין לביוכימיה על שם נלה וליאון בנוזיו
    מרצהDr. Chuan Ku
    Institute of Plant and Microbial Biology, Academia Sinica, Taiwan
    מארגן
    המחלקה למדעי הצמח והסביבה
    צרו קשר
    הרצאה
  • Date:19רביעייוני 2019

    Developmental Club

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    שעה
    10:00 - 10:00
    כותרת
    “Kinetics of membraneless organelles”
    מיקום
    בניין ארתור ורושל בלפר למחקר ביורפואי
    מרצהProf. Eran Hornstein
    מארגן
    המחלקה לגנטיקה מולקולרית
    צרו קשר
    הרצאה
  • Date:19רביעייוני 2019

    Feinberg Graduation Ceremony

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    שעה
    19:30 - 21:30
    צרו קשר
    הרצאה
  • Date:20חמישייוני 2019

    Single and multi-frequency saturation methods for molecular and microstructural contrast in human MRI”

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    שעה
    10:00 - 11:00
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהProf. Elena Vinogradov
    UT Southwestern Medical Center
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about Magnetic Resonance Imaging (MRI) provides excellent quality ...»
    Magnetic Resonance Imaging (MRI) provides excellent quality images of soft tissues and is an established modality for diagnosis, prognosis and monitoring of various diseases. Majority of MRI scans in clinical practice today report on anatomy, morphology and sometimes physiology. The new area of active studies is aimed at developing MRI contrast methods for the detection of the events at the microstructural and molecular level employing endogenous properties.

    Here, we will discuss methods that employ single- and multi-frequency saturation to detect events on microstructural and molecular level. First, we will describe principles and translational aspects of Chemical Exchange Saturation Transfer1(CEST). CEST employs selective saturation of the exchanging protons and subsequent detection of the water signal decrease to create images that are weighted by the presence of a metabolite or pH2. We will describe aspects of translating CEST to reliable clinical applications and discuss its potential uses in human oncology, specifically breast cancer. Second, we will describe a method called inhomogeneous Magnetization Transfer3 (ihMT), which employs dual-frequency saturation to create contrast originating from the residual dipolar couplings and thus specific to microstructure. We will focus on the application of ihMT to the detection of myelin in brain and spinal cord. Finally, we will discuss a novel exchange-sensitive method based on the balanced steady-state free precession (bSSFP) sequence as an alternative way for chemical exchange detection (bSSFPX4). Using an effective field description, similarities between bSSFP and CW application can be explored and utilized for in-vivo MRI contrast.

    [1] K. Ward, et.al., JMR,143,79-87 (2000).
    [2] J. Zhou, et.al., Nature Medicine, 9,1085-1090 (2003).
    [3] G. Varma, et.al., MRM, 73, 614-622 (2015).
    [4] S. Zhang, et.al., JMR, 275, 55-67 (2017).
    הרצאה
  • Date:20חמישייוני 2019

    G-INCPM Special Guest Seminar - Dr. Vaclav Navratil, CEO & CTO, DIANA Biotechnologies, s.r.o.

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    שעה
    11:00 - 12:00
    כותרת
    "DIANA: new platform for protein detection and screening of protein ligands"
    מיקום
    בניין ע"ש מקס ולילאן קנדיוטי
    מארגן
    המחלקה לתשתיות מחקר מדעי החיים
    צרו קשר
    תקצירShow full text abstract about Recently developed DIANA platform (DNA-linked Inhibitor ANti...»
    Recently developed DIANA platform (DNA-linked Inhibitor ANtibody Assay) is suitable for both ultrasensitive protein detection in in vitro diagnostics and for enzyme inhibitor or protein ligand screening in drug discovery. As its name suggests, we originally designed DIANA to detect enzymes and its inhibitors, but we later showed that it is well suited also for detection of receptors and its ligands, to screen for protein-protein interaction inhibitors and for detection of small molecules. DIANA overcomes the limitations of current state of the art methods, as it can detect zeptomole amounts of targets, has a linear range of up to six logs and is applicable to biological matrices.

    Screening of chemical libraries is an important step in drug discovery, but it remains challenging for targets, which are difficult to express and purify, and current methods tend to produce false results. The sensitivity and selectivity of DIANA enables quantitative high-throughput screening of enzyme inhibitors, receptor ligands or inhibitors of protein-protein interactions with unpurified proteins. DIANA addresses also the remaining limitations of the current screening methods, as it allows high-throughput screening with high signal-to-noise ratio (Z’ factor > 0.9), sensitive hit discovery and ultralow rate of false positives (< 0.02%); while quantitatively determining the inhibition potency from a single well and requiring only picogram to nanogram quantities of potentially unpurified protein target (e.g. in human serum).

    At DIANA Biotechnologies, a recently established spin-off from the Institute of Organic Chemistry and Biochemistry in Prague, we aim to fully exploit the potential of the platform and to become center for development of new diagnostics and drug discovery. We are building up infrastructure for screening and hit to lead conversion, including our own ~150,000 compound library, which we will screen for medicinally relevant targets, taking just one week per target. The most promising compounds will be optimized for potency, selectivity, physical properties, pharmacology profile and in vitro and in vivo efficacy, where DIANA-based high-throughput ADME pharmacology tests can also be applied.

    In our talk, we will briefly summarize the assay protocol and its performance on model targets, as well as recent developments at DIANA Biotechnologies. We will discuss in more detail examples of current internal projects, mainly of the development of selectivity panels (example of inhibitors of human carbonic anhydrases) and of the first drug discovery project directed on influenza RNA polymerase and its different subunits.

    הרצאה
  • Date:20חמישייוני 2019

    Optoelectronic properties of surface-guided nanowires with controlled crystal structures and orientations

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    שעה
    11:00 - 12:00
    מיקום
    בניין הלן ומילטון קימלמן
    מרצהRegev Ben Zvi
    PHd Student, Dept. Materials and Interfaces
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    הרצאה
  • Date:20חמישייוני 2019

    Physics Colloquium

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    שעה
    11:15 - 12:30
    כותרת
    Dark Matter direct detection at a crossroads
    מיקום
    בניין הפיזיקה ע"ש עדנה וק.ב. וייסמן
    מרצהRanny Budnik
    WIS
    מארגן
    הפקולטה לפיזיקה
    צרו קשר
    תקצירShow full text abstract about The hunt for Dark Matter is reaching at a crossroads - after...»
    The hunt for Dark Matter is reaching at a crossroads - after two decades of incredible pace, where five orders of magnitude in parameter space were covered, no unambiguous signal has emerged for interaction between the alleged particles and our normal, baryonic matter. The next generation detectors, aiming at another order of magnitude sensitivity increase, are on the runway, and the question of what will be next takes interesting turns.
    I will cover the evidence for the existence of Dark Matter, present the state of the art results from the XENON1T experiment, and play with some novel ideas for the next step, trying to move the lamppost to where Dark Matter may still stay hidden.
    סימפוזיונים
  • Date:20חמישייוני 2019

    Late Middle Paleolithic site of Farah II: environmental and cultural contexts at the brinks of transition to the Upper Paleolithic in the southern Levant

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    שעה
    13:00 - 14:00
    מיקום
    מרכז הלן ומרטין קימל למדעי הארכיאולוגיה
    מרצהDr. Mae Goder, Dr. Lior Regev
    Department of Bible, Archaeology and Ancient Near Eastern Studies, Ben-Gurion University
    מארגן
    Academic Educational Research
    צרו קשר
    הרצאה
  • Date:20חמישייוני 2019

    Charge scaling as a "free lunch" approach to electronic polarization in modelling aqueous electrolytes

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    שעה
    15:00 - 16:00
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהProf. Pavel Jungwirth
    Institute of Chemistry, Academy of Sciences, Prague
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about In order to make modelling of aqueous electrolytes more accu...»
    In order to make modelling of aqueous electrolytes more accurate, we explore the recently suggested approach for effectively accounting for electronic polarization effects using ionic charge rescaling. Based on this approach we develop a new and accurate parametrization of ions. Comparison to neutron scattering and ab initio molecular dynamics simulations demonstrates that the charge scaling approach allows for an accurate description of concentrated aqueous salt solutions including divalent ions. The present approach should thus find broad use in efficient and accurate modelling of polyvalent ions in aqueous environments, such as those encountered in biological and technological applications.
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  • Date:23ראשוןיוני 2019

    Cell Penetration and Membrane Fusion: Two Sides of the Same Coin

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    שעה
    11:00 - 12:00
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהProf. Pavel Jungwirth
    Institute of Chemistry, Academy of Sciences, Prague
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about Cell penetrating peptides have a unique potential for target...»
    Cell penetrating peptides have a unique potential for targeted drug delivery. While ATP-driven endocytosis is known to play a major role in their internalization, there has been also ample evidence for the importance of passive translocation for which the direct mechanism, where the peptide is thought to directly pass through the membrane via a temporary pore, has been widely advocated. In this talk, I will question this view and demonstrate that arginine-rich cell penetrating peptides can instead enter vesicles and cells by inducing multilamellarity and fusion, analogously to the action of calcium ions.

    Allolio C., Magarkar A., Jurkiewiczf P., Baxová K., Javanainen M., Mason P.E., Sachl R., Cebecauer M., Hof M., Horinek D., Heinz V., Rachel R., Zieglerg C.M., Schrofel A., Jungwirth P.: Arginine-rich cell-penetrating peptides induce membrane multilamellarity and subsequently enter via formation of a fusion pore. Proceedings of the National Academy of Sciences USA 115 (2018) 11923.
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  • Date:23ראשוןיוני 2019

    A Forward Model for the Architecture of Inner Planetary Systems

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    שעה
    11:00 - 11:00
    מיקום
    בניין משפחת זוסמן
    מרצהEric Ford
    Department of Astronomy and Astrophysics Penn State
    מארגן
    המחלקה למדעי כדור הארץ וכוכבי הלכת
    צרו קשר
    הרצאה

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