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June 06, 2016
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Date:15TuesdayJanuary 2019Lecture
Chemical and Biological Physics and Organic Chemistry Seminar
More information Time 11:00 - 11:00Title The Renaissance of Sabatier CO2 Hydrogenation CatalysisLocation Perlman Chemical Sciences BuildingLecturer Charlotte Vogt
Utrecht UniversityOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about The 100-year old Sabatier reaction, i.e. catalytic CO2 hydro...» The 100-year old Sabatier reaction, i.e. catalytic CO2 hydrogenation, is now seeing a renaissance due to its application in Power-to-Methane processes for electric grid stability and potential CO2 emission mitigation [1]. To date however, the fundamentals of this important catalytic reaction are still a matter of debate. This is partly due to the structure sensitive nature of CO2 hydrogenation: not all surface atoms of the active phase nanoparticles have the same specific activity. Recently, we have showed how the mechanism of catalytic CO2 methanation depends on Ni nanoparticle size using a unique set of well-defined silica-supported Ni nanoclusters (in the range 1-7 nm) and advanced characterization methods (i.e., operando FT-IR, and operando quick X-ray absorption spectroscopy) [2]. By utilizing fundamental theoretical concepts proving why CO2 is structure sensitive, and how CO2 is activated mechanistically and linking spectroscopic descriptors to these fundamental findings we ultimately leverage our understanding with a toolbox of structure sensitivity, and a library of reducible and non-reducible supports (SiO2, Al2O3, CeO2, ZrO2 and TiO2), tuning the selectivity and activity of methanation over Ni [3]. For example, we show that CO2 hydrogenation over Ni can and does form propane. This work contributes to our ability to produce “ideal” catalysts by improving the understanding of the catalytic sites and reaction pathways responsible for higher activity and even C-C coupling. This toolbox is thus not only useful for the highly active and selective production of methane within the Power-to-Methane concept, but also provides new insights for CO2 activation towards value-added chemicals thereby reducing the deleterious effects of this environmentally harmful molecule. -
Date:15TuesdayJanuary 2019Lecture
Bacterial predation in complex microbial ecosystems and its importance in trophic networks
More information Time 11:30 - 11:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Edouard Jurkevitch
Department of Plant Pathology and Microbiology, Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, RehovotOrganizer Department of Plant and Environmental SciencesHomepage Contact -
Date:15TuesdayJanuary 2019Lecture
Prof. Roee Ozeri - Quantum computers: taming Schrodinger's cat
More information Time 12:00 - 12:00Title Quantum computers: taming Schrodinger's catLocation Dolfi and Lola Ebner AuditoriumLecturer Prof. Roee Ozeri Organizer Communications and Spokesperson DepartmentHomepage Contact -
Date:15TuesdayJanuary 2019Lecture
The marvelous Phycobilisome light harvesting system: revealing mechanisms that control the flow of energy
More information Time 14:00 - 15:00Location Helen and Milton A. Kimmelman BuildingLecturer Prof. Noam Adir
Dean, Schulich Faculty of Chemistry, TechnionOrganizer Department of Chemical and Structural BiologyContact -
Date:16WednesdayJanuary 2019Lecture
Special Guest Seminar with Dr. Shai Carmi
More information Time 11:30 - 11:30Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dr. Shai Carmi Organizer Department of Molecular GeneticsContact Abstract Show full text abstract about In this talk, I will review recent work by myself and others...» In this talk, I will review recent work by myself and others on Jewish population and medical genetics, focusing on Ashkenazi Jews (AJ). I will describe the mixture events of AJ in Europe, the founder event they have experienced in the late Middle Ages, and their connections to ancient populations of the Levant. I will then describe large-scale genomic databases that we have recently generated for AJ, and the opportunities they open in medical genetics given the unique AJ demographic history. I will describe a few medical genetics projects including carrier screening, genome-wide association studies of microbiome composition and other traits, and preimplantation genetic diagnosis. -
Date:17ThursdayJanuary 2019Lecture
Special Guest Seminar with Ariel Schwartz
More information Time 10:00 - 10:00Title “Deep Semantic Genome and Protein Representation for Annotation, Discovery, and Engineering”Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dr. Ariel Schwartz
Co-founder and Chief Technology Officer at Denovium IncOrganizer Department of Molecular GeneticsContact Abstract Show full text abstract about Computational assignment of function to proteins with no kno...» Computational assignment of function to proteins with no known homologs is still an unsolved problem. We have created a novel, function-based approach to protein annotation and discovery called D-SPACE (Deep Semantic Protein Annotation Classification and Exploration), comprised of a multi-task, multi-label deep neural network trained on over 70 million proteins. Distinct from homology and motif-based methods, D-SPACE encodes proteins in high-dimensional representations (embeddings), allowing the accurate assignment of over 180,000 labels for 13 distinct tasks. The embedding representation enables fast searches for functionally related proteins, including homologs undetectable by traditional approaches. D-SPACE annotates all 109 million proteins in UniProt in under 35 hours on a single computer and searches the entirety of these in seconds. D-SPACE further quantifies the relative functional effect of mutations, facilitating rapid in-silico mutagenesis for protein engineering applications. D-SPACE incorporates protein annotation, search, and other exploratory efforts into a single cohesive model. We have recently extended this work from protein to DNA, enabling assignment of function to whole genomes and metagenomic contigs in seconds. Conserved genomic motifs as well as the functional impact of mutations in coding as well as non-coding genomic regions can be predicted directly from raw DNA sequence without the use of traditional comparative genomics approaches for motif detection, such as multiple sequence alignments, PSSMs, and profile HMMs. -
Date:17ThursdayJanuary 2019Lecture
Using solution NMR spectroscopy to characterise the dynamics of side chains and ions in proteins
More information Time 10:00 - 11:00Location Perlman Chemical Sciences BuildingLecturer Prof. Flemming Hansen
Institute of Structural & Molecular Biology, University College LondonOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Proteins are dynamic entities and function is often related ...» Proteins are dynamic entities and function is often related to motions on time-scales from picoseconds to seconds. Understanding not only the backbone, but also the dynamics and interactions of side chains and ions within proteins is crucial, because side chains cover protein surfaces and are imperative for substrate recognition and both side chains and ions are key for most active sites in enzymes.
New NMR-based methods, anchored in 13C-direct-detection, to characterise the motions and interactions of functional side chains in large proteins will be presented. One class of experiments is aimed at arginine side chains and allows the strength of interactions formed via the guanidinium group to be quantified. NMR measurements of the solvent exchange rate of labile guanidinium protons as well as measurements of the rotational motion about the Nε-Cζ bond allows for such quantifications. Secondly, a new class of NMR experiments is presented, which relies on 13C-13C correlation spectra and allows a general quantification of motion and structure of side chains in large proteins. The new 13C-13C correlation spectra are applied to a 82 kDa protein, where well-resolved spectra with minimal overlap are obtained within a few hours.
NMR-based methods to characterise potassium binding in medium-large proteins will also be presented. Due to its size, 15N-ammonium can be used as a proxy for potassium to probe potassium binding in medium-large proteins. NMR pulse sequences will be presented to select specific spin density matrix elements of the 15NH4+ spin system and to measure their relaxation rates in order to characterise the rotational correlation time of protein-bound 15NH4+ as well as report on chemical exchange events of the 15NH4+ ion.
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Date:17ThursdayJanuary 2019Colloquia
Imaging Topological Materials
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Prof. Jenny Hoffman
HarvardOrganizer Faculty of PhysicsContact Abstract Show full text abstract about Today’s electronic technology – the pixels on the screen and...» Today’s electronic technology – the pixels on the screen and the process to print the words on the page – are all made possible by the controlled motion of an electron’s charge. In the last decade, the discovery of topological band insulators with robust spin-polarized surface states has launched a new subfield of physics promising a new paradigm in computing. When topology is combined with strong electron correlations, even more interesting states of matter can arise, suggesting additional applications in quantum computing. Here we present the first direct proof of a strongly correlated topological insulator. Using scanning tunneling microscopy to probe the real and momentum space structure of SmB6, we quantify the opening of a Kondo insulating gap. Within that gap, we discover linearly dispersing surface states with the heaviest observed Dirac states in any material – hundreds of times the mass of a free electron. We show how single atom defects can scatter these surface states, which paves the way towards manipulating single atoms and thus controlling surface states and their excitations at the nanoscale.
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Date:17ThursdayJanuary 2019Lecture
Special Guest Seminar with Dan Bracha
More information Time 12:00 - 13:00Title “Optogenetic Protein Droplets: Mapping and Moving Through Intracellular Phase Space”Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dan Bracha
Department of Chemistry and Biological Engineering, Princeton University, USAOrganizer Department of Molecular GeneticsContact -
Date:17ThursdayJanuary 2019Lecture
What can phytoliths and other proxies reveal about anthropogenic soils and the first sedentary societies of pre-Columbian Amazonia?
More information Time 13:00 - 13:00Location Helen and Martin Kimmel Center for Archaeological ScienceLecturer Dr. Jennifer Watling
Laboratório de Arqueologia dos Trópicos, Museu de Arqueologia e Etnologia Laboratório de Micropaleontologia, Instituto de Geociências Universidade de São PauloOrganizer Academic Educational ResearchContact -
Date:17ThursdayJanuary 2019Lecture
SHIRAT HAMADA
More information Time 19:30 - 21:30Location Dolfi and Lola Ebner AuditoriumContact -
Date:20SundayJanuary 201924ThursdayJanuary 2019Conference
Workshop on Nonequilibrium Physics Across Boundaries
More information Time 08:00 - 08:00Location Edna and K.B. Weissman Building of Physical SciencesChairperson Oren RazHomepage -
Date:20SundayJanuary 201922TuesdayJanuary 2019Conference
A Franco-Israeli Symposium in MAGNETIC RESONANCE
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Lucio FrydmanOrganizer The Helen and Martin Kimmel Institute for Magnetic Resonance ResearchHomepage -
Date:20SundayJanuary 2019Lecture
TBA
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Caryn Erlick-Haspel
The Hebrew University, JerusalemOrganizer Department of Earth and Planetary SciencesContact -
Date:20SundayJanuary 2019Lecture
On the mechanics of leaves, flowers, and sea-slugs
More information Time 13:00 - 13:00Location Edna and K.B. Weissman Building of Physical SciencesLecturer Shankar Venkataramani
Shankar Venkataramani University of Arizona.Organizer Department of Physics of Complex SystemsContact Abstract Show full text abstract about I will discuss some connections between the geometry and the...» I will discuss some connections between the geometry and the mechanics of thin elastic objects with negative curvature. I will motivate the need for new "geometric" methods for discretizing the relevant equations, and present some of our preliminary work in this direction.
This is joint work with Toby Shearman and Ken Yamamoto.
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Date:21MondayJanuary 2019Colloquia
"Molecular electronics as a playground for nanoscale thermal transport"
More information Time 11:00 - 12:15Location Dolfi and Lola Ebner AuditoriumLecturer Prof. Juan Carlos Cuevas
Theoretical Condensed Matter Physics Department, Universidad Autónoma de Madrid, SpainOrganizer Faculty of ChemistryContact Abstract Show full text abstract about Abstract With the advent of novel fabrication techniques...» Abstract
With the advent of novel fabrication techniques in the 1980s and 1990s, it became possible to explore many physical phenomena at the nanoscale. Since then, a lot of progress has been done in the understanding of the electronic transport, mechanical, and optical properties of nanoscale devices. However, thermal transport in these systems has remained relatively unexplored because of the experimental difficulty to measure the flow of heat and energy at this small scale. In this talk, I will review our theoretical and experimental efforts to establish the fundamental laws that govern nanoscale thermal transport by using atomic and molecular junctions as a playground. In particular, I will discuss basic phenomena such as Joule heating and Peltier cooling in molecular junctions [1,2] and quantized thermal transport in atomic-size contacts [3].
References
[1] W. Lee, K. Kim, W. Jeong, L.A. Zotti, F. Pauly, J.C. Cuevas, P. Reddy, Nature 498, 209 (2013).
[2] L. Cui, R. Miao, K. Wang, D. Thompson, L.A. Zotti, J.C. Cuevas, E. Meyhofer, P. Reddy, Nature Nanotechnology 13, 122 (2018).
[3] L. Cui, W. Jeong, S. Hur, M. Matt, J.C Klöckner, F. Pauly, J.C. Cuevas, E. Meyhofer, P. Reddy, Science 355, 1192 (2017). -
Date:21MondayJanuary 2019Lecture
Flag leaf senescence and grain protein interaction in barley, two elements that can determine beer quality
More information Time 11:00 - 11:00Title PhD thesis defenseLocation Nella and Leon Benoziyo Building for Biological SciencesLecturer Maja Cohen
Prof. Robert Fluhr's lab., Department of Plant and Environmental SciencesOrganizer Department of Plant and Environmental SciencesContact -
Date:21MondayJanuary 2019Lecture
IMM Guest seminar-Prof. Yoram Reiter will lecture on "Engineering Immune Effector Molecules and Cells for Immunotherapy of Cancer and Autoimmunity."
More information Time 13:00 - 13:00Location Wolfson Building for Biological ResearchLecturer Prof. Yoram Reiter
Faculty of Biology and Technion Integrated Cancer Center Technion-Israel Institute of TechnologyOrganizer Department of Systems ImmunologyContact -
Date:22TuesdayJanuary 2019Lecture
Connecting the dots: functional and structural insights into the Legionella pneumophila Dot/Icm secretion system
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. David Chetrit
Dept. of Microbial Pathogenesis, Yale Univ.School of MedicineOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Type IV secretion systems (T4SS) are widespread in bacteria ...» Type IV secretion systems (T4SS) are widespread in bacteria and despite their fundamental importance in processes such as DNA conjugation and pathogenesis of plants, animals and humans, they are among the most complex and yet arguably the least understood secretion systems in the prokaryotic kingdom. Using live fluorescence microscopy in conjunction with cryo-electron tomography, we determined the in-situ structure of the T4SS of the respiratory pathogen Legionella pneumophila, called Dot/Icm. Unexpectedly, we have discovered that the major ATPases energizing center in the cytosol of the bacterial cell creates a dynamic assembly and forms a unique central channel in that it is constructed by a hexameric array of dimeric proteins. We have showed that the ATPase DotB cycles between the cytosol and the Type IV machine, indicating that it is involved in energizing the Type IV apparatus once a signal is received to initiate protein translocation. Our data changed the existing paradigm for how T4SS function and provides new insights for future studies that are important for a complete understanding of host pathogen interaction processes. -
Date:22TuesdayJanuary 2019Lecture
Understanding properties of advanced low-dimensional materials by low-voltage atomic-scale TEM experiments
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Ute Kaiser
Central Facility Materials Science Electron Microscopy, Ulm University, UlmOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about A new type of transmission electron microscopes operating at...» A new type of transmission electron microscopes operating at electron energies between 80keV and 20keV has been developed to obtain structural and electronic properties of advanced low-dimensional material at the atomic scale. It allows to undercut most of the materials knock-on damage thresholds and enables sub-Angstroem resolution in an 4000x4000 pixels, single-shoot image down to 40keV by correcting not only the geometrical aberrations of the objective lens but also its chromatic aberration. During the imaging process, the interaction of the beam electrons with the low-dimensional material can, nevertheless, results in changes of the atomic structure due to ionization and radiolysis, and sophisticated sample preparation methods are employed to reduce these effects. In this talk, we briefly outline key instrumental and methodological developments and report on structural properties of low-dimensional materials. We not only determine the structure of the pristine material but also use the electron beam to engineer defined properties. Thus, we show for instance the dynamics of extended defects in MoTe2 and WS2 and the creation of a commensurate charge density wave (CDW) in a monolayer 1T-TaSe2, as well as properties of MnPS3, and moreover the dynamics and bond order changing of dirhenium molecule in single-walled carbon nanotubes. Finally we intercalate bilayer graphene by lithium and study in-situ lithiation and delithiation between bilayer graphene, identify single Li atoms as well as the structure of the new high density crystalline Li- phase.
