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פברואר 01, 2019

  • Date:07חמישיפברואר 2019

    Towards plug and play parallel transmission for 7T human brain MRI with universal pulses

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    שעה
    10:00 - 11:00
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהDr. Nicolas Boulant
    NeuroSpin, CEA-Saclay, Université Paris-Saclay
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about Parallel transmission has been the most promising approach t...»
    Parallel transmission has been the most promising approach to counteract the radiofrequency (RF) field inhomogeneity problem in MRI at ultra-high field. Despite tremendous progress made by the community for more than a decade, the technology yet has failed to be embraced in routine practice because of a more complex safety management and a cumbersome calibration procedure for each subject in the scanner. After thorough tests and validations to address the former point, universal pulses were proposed a couple of years ago to circumvent the workflow problem in head imaging at 7T. For a given RF coil, they consist of designing, offline, pulse solutions to mitigate the RF field inhomogeneity problem while being robust to intersubject variability, all within explicit hardware and safety constraints. This talk will present the latest sequence and pulse developments incorporating these solutions, now covering 3D (GRE, MPRAGE, TSE, MP-FLAIR, DIR, 3D-EPI) and 2D (GRE, MB-EPI) sequences with first routine results for fMRI (resting-state HCP-style, localizer paradigm) and ongoing clinical studies (Multiple Sclerosis), thereby making parallel transmission one step closer to clinical routine and at zero cost for the user. Perhaps interestingly, to reach the desired versatility and simplicity, some solutions were inspired from solid-state NMR methods. To date the proposed universal pulses cumulate tests on around 50 volunteers and across 4 sites. They have never failed to return brain images virtually free of B1+ artefacts at 7T.
    הרצאה
  • Date:07חמישיפברואר 2019

    Chemical and Biological Physics Guest Seminar

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    שעה
    11:00 - 11:00
    כותרת
    Interactions of hydrophobic nanoparticles with biological membrane
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהProf. Matej Daniel
    Czech Technical University, Prague
    מארגן
    המחלקה לפיזיקה כימית וביולוגית
    צרו קשר
    תקצירShow full text abstract about Small hydrophobic gold nanoparticles with a diameter lower t...»
    Small hydrophobic gold nanoparticles with a diameter lower than the membrane thickness can form clusters or uniformly distribute within the hydrophobic core of the bilayer. The coexistence of two stable phases (clustered and dispersed) indicates the energy barrier between nanoparticles. It could be shown, that the forces between the nanoparticles embedded in the biological membrane could be either attractive or repulsive, depending on the mutual distance between them.
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  • Date:07חמישיפברואר 2019

    The Biomass Distribution on Earth

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    שעה
    11:15 - 12:30
    מיקום
    בניין הפיזיקה ע"ש עדנה וק.ב. וייסמן
    מרצהProf. Ron Milo
    Department of Plant and Environmental Sciences Weizmann Institute of Science
    מארגן
    הפקולטה לפיזיקה
    צרו קשר
    תקצירShow full text abstract about A census of the biomass on Earth is key for understanding th...»
    A census of the biomass on Earth is key for understanding the structure and dynamics of the biosphere. Yet, a quantitative, global view of how the biomass of different taxa compare with each other is still lacking. In this study, we harness recent advances in global sampling techniques to assemble the overall biomass composition of the biosphere, establishing the first census of the biomass of all the kingdoms of life.
    סימפוזיונים
  • Date:07חמישיפברואר 2019

    Vision and Robotics Seminar

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    שעה
    12:15 - 13:30
    כותרת
    Using visual and auditory cues for audio enhancement
    מיקום
    בניין יעקב זיסקינד
    מרצהTavi Halperin
    The Hebrew University of Jerusalem
    מארגן
    הפקולטה למתמטיקה ומדעי המחשב , המחלקה למדעי המחשב ומתמטיקה שימושית , המחלקה למתמטיקה
    צרו קשר
    הרצאה
  • Date:07חמישיפברואר 2019

    Frustrations in the treatment of Ovarian Cancer

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    שעה
    14:00 - 15:00
    כותרת
    Special Guest Seminar
    מיקום
    בניין ע"ש מקס ולילאן קנדיוטי
    מרצהProf. Uziel Beller
    Shaare Zedek Medical Center Jerusalem & Assuata Ashdod
    מארגן
    המחלקה לאימונולוגיה ורגנרציה ביולוגית
    צרו קשר
    הרצאה
  • Date:07חמישיפברואר 2019

    Pelletron meeting - by invitation only

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    שעה
    16:00 - 17:45
    צרו קשר
    הרצאה
  • Date:10ראשוןפברואר 2019

    Chemical and Biological Physics Guest Seminar

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    שעה
    09:30 - 09:30
    כותרת
    Computational Modeling of Large Biomolecular Systems: Methodology and a Case ‎Study of the Smartest Molecule (an NMDA Receptor in the Brain)
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהDr. Anton V. Sinitskiy
    Stanford University
    מארגן
    המחלקה לפיזיקה כימית וביולוגית
    צרו קשר
    תקצירShow full text abstract about In this talk targeted at a wide audience of chemists, I will...»
    In this talk targeted at a wide audience of chemists, I will start with a story about the ‘smartest’ molecule. Neuronal NMDA receptors, in my opinion, deserve this name, because they play the key role in the molecular mechanisms of learning, memory formation, and abstract reasoning. Also, malfunctioning NMDA receptors are involved in numerous neurological disorders, including schizophrenia, epilepsy, and Alzheimer’s disease. NMDA receptors are complicated and rich in behavior, and even the most
    up-to-date experimental methods yield only a fragmented picture of these biomolecules. How do their known structures relate to their biologically relevant functional states? Through what mechanisms do post-translational modifications (specifically, glycosylation) affect their physiological properties? Computational modeling offers unique insights into these questions, and I will outline my work in this field. Simulating NMDA receptors is a formidable task, though. In the second half of my talk, I will discuss how advances in methodology could facilitate studies of such large molecular and biomolecular systems. Specifically, I will focus on the concepts of coarse-graining, Markov state modeling, and mixed-resolution hybrid modeling, highlighting my work in this field [including ultra-coarse-grained modeling, and quantum mechanics / coarse-grained molecular mechanics (QM/CG-MM) approach]. Finally, I will briefly touch on the possible use of machine learning and deep learning networks in molecular modeling. In general, further advances in the theory and methodology of modeling will result in new opportunities for studying complex phenomena, such as learning and memory, with unprecedented resolution.
    הרצאה
  • Date:10ראשוןפברואר 2019

    Uncertainty in aquatic ecosystems: living with it, managing with it…

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    שעה
    11:00 - 11:00
    מיקום
    בניין משפחת זוסמן
    מרצהGideon Gal
    Kinneret Limnological Laboratory, (KLL)
    מארגן
    המחלקה למדעי כדור הארץ וכוכבי הלכת
    צרו קשר
    הרצאה
  • Date:10ראשוןפברואר 2019

    Self-assemblies of designed B-sheet peptides as hydrogels, coatings and drug delivery nanoparticles

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    שעה
    11:00 - 12:00
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהProf. Hanna Rapaport
    Department of Biotechnology Engineering and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about Peptides in -sheet conformations have been developed in our...»
    Peptides in -sheet conformations have been developed in our lab in a bottom up fashion towards various biomedical applications. Hydrogels of -sheet peptides will be briefly introduced and the talk will then focus on peptide coatings for induced osseointegration of titanium implants and peptides enhanced nanoparticles for intracellularly targeted drug delivery.
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  • Date:10ראשוןפברואר 2019

    Recovering exact conditions at semi-local DFT cost to mitigate energy and density errors for transition metal chemistry


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    שעה
    14:00 - 15:00
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהProf. Heather Kulik
    Dept. Chemical Engineering, MIT
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about Accurate prediction of electronic properties of open-shell t...»
    Accurate prediction of electronic properties of open-shell transition metal complexes is essential for materials design and catalysis. Nevertheless, the properties that make these materials and molecules so compelling also make them extremely challenging to study accurately with any computational model. Although density functional theory (DFT) remains the method of choice for its balance of speed and accuracy in computational screening, semi-local approximations in density functional theory (DFT), such as the generalized gradient approximation (GGA), suffer from many electron self-interaction errors that causes them to predict erroneous spin states and geometries, barrier heights and dissociation energies, and orbital energies, to name a few. I will outline our recent efforts to both understand and correct these errors with a focus on predictive modeling of transition metal chemistry : i) We describe how common approximations to recover the derivative discontinuity (i.e., DFT+U and global or range separated hybrids) affect the density properties of transition metal complexes and correlated solids with respect to exact references, ii) We demonstrate recovery of the flat-plane condition that is a union of the requirement of piecewise linearity with electron removal or addition as well as unchanged energy when changing the spin of an electron in isoenergetic orbitals. We accomplish this at no computational cost over semi-local DFT by building from scratch our judiciously-modified DFT (jmDFT) functionals designed to oppose errors inherent in semi-local functionals. We show the connection to but divergence of these functional forms from hybrid expressions and standard DFT+U explain why both common approximations increase static correlation errors. We also present fundamental expressions for determining these parameters, mitigating any empiricism in the method. iii) Finally, time permitting, I will describe our efforts to overcome DFT inaccuracies through the development of data-driven structure-method relationships, including in artificial neural networks that can predict sensitivity of spin-state ordering in transition metal complexes to changes in the exchange-correlation functional.



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  • Date:11שניפברואר 2019

    "Bio-organic systems for Electrocatalytic CO2 recycling"

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    שעה
    11:00 - 12:15
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהProf. Serdar Sariciftci
    Linz-Organic Photovoltaic Cells institute in thy Johannes Kepler University of Linz
    מארגן
    הפקולטה לכימיה
    צרו קשר
    סימפוזיונים
  • Date:11שניפברואר 2019

    Chemical tools for manipulating the topology of polymer networks

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    שעה
    11:00 - 12:00
    מיקום
    בניין הלן ומילטון קימלמן
    מרצהProf. Jeremiah A. Johnson
    Department of Chemistry, Massachusetts Institute of Technology
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    הרצאה
  • Date:11שניפברואר 2019

    Imm Special Guest Seminar:Dr. Fernando Racimo and Dr. Martin Sikora

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    שעה
    11:00 - 12:00
    מיקום
    בניין וולפסון למחקר ביולוגי
    מרצהDr. Fernando Racimo and Dr. Martin Sikora
    מארגן
    המחלקה לאימונולוגיה מערכתית
    צרו קשר
    הרצאה
  • Date:11שניפברואר 2019

    Autophagy, the master of selective protein recycling

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    שעה
    11:30 - 11:30
    מיקום
    בניין לביוכימיה על שם נלה וליאון בנוזיו
    מרצהProf. Richard D. Vierstra
    George & Charmaine Mallinckrodt Professor, Department of Biology, Washington University in St. Louis, USA
    מארגן
    המחלקה למדעי הצמח והסביבה
    דף בית
    צרו קשר
    הרצאה
  • Date:11שניפברואר 2019

    IMM Guest seminar- Prof. Peter J. Murray will lecture on "Immune regulation by amino acid metabolism."

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    שעה
    12:30 - 12:30
    מיקום
    בניין וולפסון למחקר ביולוגי
    מרצהProf. Peter J. Murray
    Immunoregulation Group, Max Planck Institute of Biochemistry, Martinsried, Germany.
    מארגן
    המחלקה לאימונולוגיה מערכתית
    צרו קשר
    הרצאה
  • Date:11שניפברואר 2019

    Plasmonic photo-catalysis - “Hot electrons” or just heating?”

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    שעה
    14:00 - 15:00
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהProf. Yonatan Dubi
    Department of Chemistry & The Ilze-Katz Institute for Nano-Scale Science and Technology, BGU
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about What happens to electrons in a metal when they are illuminat...»
    What happens to electrons in a metal when they are illuminated? This fundamental problem is a driving force in shaping modern physics since the discovery of the photo-electric effect. In recent years, this problem resurfaced from a new angle, owing to developments in the field of nano-plasmonics, where metallic nanostructures give rise to resonantly enhanced local electromagnetic fields (surface plasmons). Presumably, these plasmons can transfer their energy to the electrons in the metal very efficiently, creating “hot electrons”, i.e. energetic electrons out of equilibrium. Such energetic electrons have been demonstrated to be useful in a variety of ways, most recently in catalysis of chemical reactions.

    Or have they?

    In this talk we argue that what appears to be hot-electron-mediated photo-catalysis is really a simple heating effect. We present a theory for plasmonic hot-electron generation, which takes into account non-equilibrium as well as thermal effects. Specifically, we consider the effect of both photons and phonons on the electron distribution function, and calculate self-consistently the full electron distribution and the increase in electron and lattice temperatures above ambient conditions (as observed experimentally), thus going well beyond the limit of existing theories. Calculating the efficiency of hot-electron generation, we find that it is extremely small, and most power goes into heating. We use this theory to re-interpret data from central experiments claiming hot-electron generation, and find that the data fits remarkably a simple theory of heating. Finally, we suggest control experiments to further test our conclusions, and discuss the prospect of using the hot electrons for photocatalysis.

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  • Date:11שניפברואר 2019

    Symbolic dynamics for maps on surfaces

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    שעה
    14:15 - 14:15
    מיקום
    בניין הפיזיקה ע"ש עדנה וק.ב. וייסמן
    מרצהWIS, Prof. Omri Sarig
    מארגן
    המחלקה לפיזיקה של מערכות מורכבות
    צרו קשר
    תקצירShow full text abstract about : I will review some of the ideas used by mathematicians to...»
    : I will review some of the ideas used by mathematicians to study the ergodic theory of "chaotic" smooth invertible maps on surfaces. Symbolic dynamics allows to "change coordinates" and pass to a model similar to the configuration space of a 1D lattice gas model. Analogies to equilibrium statistical physics can then be employed to study the dynamic and stochastic properties of the system.
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  • Date:12שלישיפברואר 2019

    eIF1A promotes translation of cell cycle genes

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    שעה
    10:00 - 10:30
    מיקום
    בניין לביוכימיה על שם נלה וליאון בנוזיו
    מרצהUrmila Sehrawat
    Department of Biomolecular Sciences-WIS
    מארגן
    המחלקה למדעים ביומולקולריים
    צרו קשר
    תקצירShow full text abstract about Protein synthesis is linked to cell proliferation and its de...»
    Protein synthesis is linked to cell proliferation and its deregulation contributes to diseases such as cancer. eIF1A plays a key role in scanning and AUG selection and differentially affects translation of distinct mRNAs. Its unstructured N-terminal tail (NTT) is frequently mutated in several malignancies. Here, we show that eIF1A is essential for cell proliferation and cell-cycle progression. Ribosome-profiling of eIF1A knockdown cells revealed a substantial reduction in protein synthesis, with particular enrichment of cell-cycle mRNAs. The downregulated genes are predominantly characterized by lengthy 5’UTR. On the other hand, eIF1A depletion caused a broad stimulation of initiation in 5’UTRs at near-cognate AUG. Importantly, cancer-associated eIF1A-NTT mutants augment the positive effect of eIF1A on long 5’UTR while hardly affecting AUG selection. Our findings suggest that reduced binding of eIF1A NTT mutants to the ribosome retains its open state and facilitate scanning of long 5’UTR-containing cell cycle genes.

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  • Date:12שלישיפברואר 2019

    Dissecting pathways of neuroinflammation in Gaucher disease

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    שעה
    10:30 - 11:00
    מיקום
    בניין לביוכימיה על שם נלה וליאון בנוזיו
    מרצהAyelet Vardi
    Department of Biomolecular Sciences-WIS
    מארגן
    המחלקה למדעים ביומולקולריים
    צרו קשר
    תקצירShow full text abstract about Gaucher disease (GD), a common lysosomal storage disorder (L...»
    Gaucher disease (GD), a common lysosomal storage disorder (LSD), is caused by
    mutations in the GBA1 gene. This gene encodes the lysosomal hydrolase
    glucocerebrosidase (GlcCerase), and in the disease, the lipid glucosylceramide
    (GlcCer) accumulates within the cell. Although neuronopathic Gaucher disease (nGD) was described over a hundred years ago, little is known about the mechanisms leading from GlcCer accumulation to neuronal cell death and inflammation. Recently, our laboratory identified induction of the type 1 interferon (IFN) response in nGD mice. The IFN response is the fundamental cellular defense mechanism against viral infection, however it can also be induced in the absence of infection. Ablation of the IFN receptor (IFNAR) did not have any effect on the viability of nGD mice. Therefore, we took availability of quadrat deficient mice where four adaptors of main pathogen recognition receptors (PRR) are blocked. Ablation of all the pathways leading to IFN production did not have effect on mice life span. Nevertheless, we utilized these results to conduct an RNA sequencing study with the goal of defining what are the inflammatory pathways lead to disease development and, eventually, to mice death.

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  • Date:12שלישיפברואר 2019

    Transcriptional memory and proteostasis at the single cell level

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    שעה
    11:00 - 12:00
    מיקום
    בניין ארתור ורושל בלפר למחקר ביורפואי
    מרצהDavid Suter, PhD
    Assistant professor Institute of Bioengineering Ecole Polytechnique Federale de Lausanne (EPFL)
    מארגן
    המחלקה לביולוגיה מולקולרית של התא
    צרו קשר
    הרצאה

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