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February 21, 2016

  • Date:29TuesdayDecember 2020

    Scientific Council meeting

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    Time
    14:00 - 16:00
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    Academic Events
  • Date:31ThursdayDecember 2020

    1H LF NMR Sensor Application for Monitoring of PUFA-rich Healthy Food Autoxidation

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    Time
    09:30 - 10:30
    LecturerProf. Zeev Wiesman, Ana Naamat
    Department of Biotechnology Engineering Ben Gurion University of the Negev
    Organizer
    Department of Molecular Chemistry and Materials Science
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    AbstractShow full text abstract about Abstract: The present seminar will review our work in 1H LF ...»
    Abstract: The present seminar will review our work in 1H LF NMR energy relaxation time technology and its application in chemical and morphological characterization and monitoring of oxidation of polyunsaturated fatty acids (PUFA) found in many important commercial products such as edible oils, foods, and biological systems. PUFA’s aggregates are related simultaneously with material’s functionality and degradation. The multiple double bonds and allylic carbons characteristics of the PUFA’s molecular structure are responsible for its oxidation susceptibility and can result in the degrade of the product’s functionality and formation of toxic substances. Wherein individual PUFA molecules have specific structures their material functionality and stability against oxidation are strongly depended on their aggregate structures such as in oils or within aqueous emulsions and specific arrangements within these structures with other components such as antioxidants is an important material parameter.
    The oxidation degree of PUFA’s rich materials can be measured via different methods such as volumetric, spectroscopic and chromatographic technologies. The traditional technologies based on titrimetric techniques have many drawbacks. These methods need strict time regimes during individual stages of analyzes, control of the intensity of the agitation and control of reaction components including light and atmospheric oxygen exposure. Other disadvantage of these traditional methodologies is the requirement of a large amount of solvents, being environmental unfriendly. In order to overcome the disadvantages of the traditional technologies used to monitor oxidation we are suggesting the use 1H LF NMR relaxation. This technology does not require organic solvents, complex samples preparation and the sample is preserved after analysis. The 1H LF NMR generates 2D T1 (spin-lattice) vs. T2 (spin-spin) energy relaxation time domain that is able together with self-diffusion test to characterize chemical and morphologically complex aggregate materials such as PUFA in liquid or solid assembly or in presence of interfacial forces of water. In addition, these spectra can efficiently monitor oxidation and assess antioxidants efficacy.
    We demonstrate the work we have done to date on the 1H LF NMR data processing optimization and the application of this technology in the characterization and monitoring of oxidation on oils on fatty acids saturated, monounsaturated and polyunsaturated. This sensor application is of relevant contributions for diverse fields such as food industries, pharmaceuticals, cosmetics and biofuels.
    The seminar is divided into three parts:
    a) Optimization of the ILT data processing technology of 1H LF NMR energy relaxation time. This study showed the efficiency of the regularization parameters for data reconstruction, and a relative high accuracy of the primal dual convex objectives (PDCO) solutions in comparison to the graphic results of real data.
    b) Developing of intelligent NMR relaxation sensor applications of fatty acids (FA) with saturated chains, MUFA and PUFA-rich oils for their chemical and physical/morphological characterization and monitoring of their autoxidation. Detailed fingerprinting chemical and morphological maps
    were generated for saturated FAs, MUFAs, PUFAs and their oxidation polymerized final products. It was possible to propose peak assignments to the various spin-lattice (T1) and spin –spin (T2) energy relaxation time proton populations (TD) based on the molecular segmental motions of the different fatty acids chemical and structural segments (e.g., glycerol; double bonds; aliphatic chains; and tails) to generate an explicatory dictionary of T1 and T2 values with chemical and physical/morphological structures and their changes due to oxidation.
    c) Developing of intelligent 1H LF NMR energy relaxation time domain sensor application for PUFA-rich oil-in-water emulsions characterization and monitoring autoxidation. Emulsions based on linseeds, very rich in α-linolenic acid PUFA (18:3) and structural oleosin protein and other emulsification agents naturally producing nano-scale oxidation stable oil bodies, were formed from linseed in water. The linseed emulsions enriched with PUFA-rich fish oil were analyzed under thermal oxidation conditions, using 1H LF NMR T1-T2 energy relaxation time reconstruction for determining the oil bodies composition and structure and oxidative stability.
    Lecture
  • Date:03SundayJanuary 2021

    PCR-free sensing of Covid-19, metastatic mRNA biomarkers and towards single-cell proteomic

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    Time
    11:00 - 12:00
    LecturerProf. Amit Meller
    Department of Biomedical Engineering, Technion
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Zoom Link: https://weizmann.zoom.us/j/98521602060?pwd=T1B1T...»
    Zoom Link: https://weizmann.zoom.us/j/98521602060?pwd=T1B1TEJqcXEwUW50QzBEaXd3RS9XZz09

    SARS-CoV-2 outbreak of the coronavirus disease (COVID-19) has underlined the acute need for extremely sensitive, accurate, fast, point-of-care mRNA quantification sensors. Here I will show how solid-state nanopores can be used to digitally count target mRNA molecules from both biological and clinical Covid-19 samples surpassing the accuracy and gold-standard” RT-qPCR. Additionally, we applied our method for the sensing of cancer metastatic mRNA biomarkers MACC1 and S100A4 at early stage of the diseases, suggesting a potential use of the method in early precision medicine diagnostics. Moving beyond nucleic acids, I will discuss our on-going efforts towards the use of plasmonic nanopore devices for the single protein molecules identification based on partial labelling of only two or three amino acids. This research opens up vast directions for single-cell proteomics of even rarely expressed proteins.
    Lecture
  • Date:03SundayJanuary 2021

    Special Guest Seminar

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    Time
    15:00 - 16:30
    Title
    "Socializing with the Neighbors: Stem Cells Reshape Their Environment to Coordinate Tissue Regeneration."
    LecturerDr. Shiri Gur-Cohen
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    Lecture
  • Date:05TuesdayJanuary 2021

    DeepMind solves a 50-year-old problem; or finally, atomically accurate protein-structure prediction

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    Time
    10:00 - 11:00
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerProf. Sarel Fleishman
    Dept. of Biomolecular Sciences-WIS
    Organizer
    Department of Biomolecular Sciences
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    AbstractShow full text abstract about Proteins are the most complex molecules we know, and yet the...»
    Proteins are the most complex molecules we know, and yet the majority fold into a unique structure. Predicting the structure of a protein directly from its amino acid sequence has been a 50-year-old challenge. Early advances in understanding the physical basis for protein folding and stability were effective in predicting the structures only of small proteins, but over the past decade, data-driven methods have made important advances towards predicting large protein structures. In a remarkable breakthrough reported last month, a deep-learning method finally exhibited atomically accurate predictions across a broad range of difficult targets in a blind community-wide assessment. I will review the main milestones on the way to this breakthrough and provide my (subjective) view of its significance for the future of molecular biology.
    Lecture
  • Date:05TuesdayJanuary 2021

    Nanoinclusions in diamonds: trapped fluids and solid molecular N2 and CO2

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    Time
    11:00 - 11:00
    Location
    https://weizmann.zoom.us/j/7621438333?pwd=c0lpdlQzYSthellXWG9rZnM0ZDRFZz09
    LecturerOded Navon
    Institute of Earth Sciences The Hebrew University of Jerusalem
    Organizer
    Department of Earth and Planetary Sciences
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    AbstractShow full text abstract about Diamonds are perfect boxes for delivering samples of fluids ...»
    Diamonds are perfect boxes for delivering samples of fluids and volatile species from the mantle to the surface. While mineral inclusions are often a few >30 micrometer in size and allow easy analysis, fluid inclusions are mostly
    Lecture
  • Date:05TuesdayJanuary 2021

    Guest Seminar via Zoom - Plant and Environmental Sciences Dept.

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    Time
    11:30 - 12:30
    Title
    Wild emmer wheat alleles promote drought adaptation mechanisms for changing climate
    Location
    https://weizmann.zoom.us/j/97676258635?pwd=VGRFM3F1dXVMWFN4OFRvVzZZVlh3QT09 Password: 118210
    LecturerHarel Bacher
    Ph.D. student with Prof. Zvi Peleg and Prof. Harkamal Walia in a collaboration program, between the Hebrew University of Jerusalem and the University of Nebraska in Lincoln, USA
    Organizer
    Department of Plant and Environmental Sciences
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    Lecture
  • Date:05TuesdayJanuary 2021

    Diffusion properties of intracellular metabolites: compartment specific probes for cell structure and physiology

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    Time
    12:30 - 13:30
    LecturerProf. Itamar Ronen
    C.J. Gorter Center for High field MRI, Leiden University Medical Center, Leiden, The Netherlands
    Organizer
    Department of Brain Sciences
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    AbstractShow full text abstract about Diffusion weighted MRI (DWI) is the main neuroimaging modali...»
    Diffusion weighted MRI (DWI) is the main neuroimaging modality used in non-invasive investigations of tissue microstructure, and provides quantitative cytomorphological information on a spatial scale well below the nominal resolution of MRI. The main limitation of DWI is its lack of compartmental specificity, as its “reporter molecule” is water, ubiquitous in all tissue compartments and cell types. Brain metabolites are mostly confined to the intracellular space, and their concentrations vary across cell types. Several metabolites give rise to quantifiable magnetic resonance spectroscopy (MRS) signatures, and are thus considered as compartment-specific and sometimes cell-specific markers. Sensitization of MRS to diffusion results in a set of diffusion properties for a variety of intracellular metabolites, from which microstructural information specific to the intracellular space can be obtained. A proper choice of experimental settings can be used to investigate properties that range from cytoplasmic viscosity and tortuosity of the intracellular space, to overall cell morphological features. The specificity of some metabolites to different cell types such as neurons and astrocytes opens the way to studying morphological properties of different cell populations and monitoring their modulation by physiological changes in health and disease.
    The presentation will introduce methodological concepts of diffusion-weighted MRS, followed by simple examples that demonstrate the unique ability of diffusion-weighted MRS to characterize cell-type specific structural features. Special emphasis will be bestowed on experimental and modelling frameworks that merge the specificity of diffusion-weighted MRS with the sensitivity of DWI to gain insights on tissue microstructure beyond what each method can separately provide.

    Zoom link to join:https://weizmann.zoom.us/j/96608033618?pwd=SEdJUkR2ZzRBZ3laUUdGbWR1VFJTdz09
    Meeting ID: 966 0803 3618
    Password: 564068

    Host: Dr. Rita Schmidt rita.schmidt@weizmann.ac.il tel: 9070




    Lecture
  • Date:06WednesdayJanuary 202107ThursdayJanuary 2021

    MicroEco 2020

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    Time
    08:00 - 08:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Noa Barak and Keren Yanuka-Golub
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    Conference
  • Date:06WednesdayJanuary 2021

    Heterologous Protein Expression and Production Platforms

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    Time
    09:00 - 10:00
    Location
    ZOOM
    LecturerDr. Tamar Unger
    Structural Proteomics Unit
    Organizer
    Department of Life Sciences Core Facilities
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    Lecture
  • Date:06WednesdayJanuary 2021

    M.Sc thesis defense: Band gaps of crystalline solids from a Wannier-localized, optimally tuned screened range-separated hybrid functional

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    Time
    14:30 - 15:30
    LecturerGuy Ohad, Ana Naamat
    Organizer
    Department of Molecular Chemistry and Materials Science
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    AbstractShow full text abstract about https://weizmann.zoom.us/j/93597285944?pwd=S0FJdHJ6eVpFTGJ3d...»
    https://weizmann.zoom.us/j/93597285944?pwd=S0FJdHJ6eVpFTGJ3dHJHa3c1amJyUT09

    Abstract:
    A long-standing challenge within density functional theory (DFT) is the development of functionals that accurately predict the band gap and electronic structure of crystalline solids. A promising candidate for this task is the screened range-separated hybrid (SRSH) functional, which has been shown to yield accurate results for finite systems when one of the parameters in the functional, the range-separation parameter, is selected a priori. In the bulk limit, however, this parameter cannot be selected non-empirically based on the ionization potential theorem, owing to the delocalized electronic orbitals. Recently, we have developed a new method for the non-empirical tuning of the range-separation parameter, that is based on the removal of an electron in a state that corresponds to a Wannier function. We have applied the method to a set of systems ranging from narrow band gap semiconductors to large band gap insulators, obtaining fundamental band gaps in excellent agreement with experiment.
    Lecture
  • Date:07ThursdayJanuary 2021

    Special zoom joint guest seminar

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    Time
    11:00 - 12:00
    Title
    “The mystery of the malaria plastid: Molecular Genetics to the Rescue”
    Location
    https://weizmann.zoom.us/j/99687213443?pwd=bUZoV2R3UmorNmxUREdYTnNTd3BUQT09
    LecturerDr. Anat Florentin
    Organizer
    Department of Molecular Genetics
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    Lecture
  • Date:10SundayJanuary 202115FridayJanuary 2021

    The VI-th International Conference on the Initial Stages of High-Energy Nuclear Collisions

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    Time
    08:00 - 08:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Alexander Milov
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    Conference
  • Date:10SundayJanuary 2021

    Departmental seminar with Nelly Frenkel

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    Time
    13:00 - 13:30
    Title
    “Chromatin modifications and the s-phase replication checkpoint as determinants of DNA replication dynamics”
    LecturerDr. Nelly Frenkel
    Organizer
    Department of Molecular Genetics
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    Lecture
  • Date:11MondayJanuary 2021

    Special Guest Seminar

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    Time
    16:00 - 17:30
    Title
    "Dietary sulfur amino acids modulate kidney function and anti-tumor immunity via the gut microbiota"
    LecturerDr. Lior Lobel
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    Lecture
  • Date:13WednesdayJanuary 2021

    Primordial black holes as dark matter: The good, the bad and the ugly

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    Time
    11:00 - 11:00
    LecturerProf.Alfredo Urbano
    Sapienza University of Rome
    Organizer
    Department of Particle Physics and Astrophysics
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    AbstractShow full text abstract about In this seminar, I will consider the possibility that the to...»
    In this seminar, I will consider the possibility that the totality of dark matter consists of atomic-size black holes of primordial origin. I will review the basics of this proposal, and I will discuss some key questions yet unsolved.
    Lecture
  • Date:14ThursdayJanuary 2021

    ‘Identification of Dynamic Components in the Liquid-Liquid Phase Separation of CPEB4 by EPR Spectroscopy’

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    Time
    09:30 - 10:30
    LecturerDr. Manas Seal
    Dept Chemical and Biological Physics, WIS
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Link: https://weizmann.zoom.us/j/96046369379?pwd=emp0U0wwcm...»
    Link: https://weizmann.zoom.us/j/96046369379?pwd=emp0U0wwcmpNQlhsMisrNmp0bjRDdz09
    Passcode: 693143


    The molecular mechanisms and associated structures and dynamics of liquid-liquid phase separation (LLPS) proteins that form membrane-less organelles in cells have attracted considerable interest in recent years. EPR spectroscopy along with site directed spin labelling (SDSL) using nitroxide spin labels is a well-established technique to study dynamics of proteins. In this seminar I will discuss the dynamic properties of the spin labelled low complexity N-terminal domain of cytoplasmic polyadenylation element binding-4 protein (CPEB4NTD) in its LLPS and non-LLPS states. We found the coexistence of three CPEB4NTD populations with distinct spin label rotational correlation times before and after LLPS. We identified population I as the predominant protein species in the dilute phase, with fast motions that agree with expected dynamic properties of monomeric CPEB4NTD. We assigned population III to a compact ensemble that undergo slow motions, and population II to a looser ensemble experiencing intermediate motions. LLPS, which took place with increasing temperature is associated with increased population of II at the expense of III, while population I remains constant. At the end based on these findings, I will present a three-component equilibrium model that postulates the existence of LLPS-competent CPEB4NTD species (II and III) prior to macroscopic phase separation.
    Lecture
  • Date:14ThursdayJanuary 2021

    Molecular mechanisms of senescence on the crossroads of cancer and aging

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    Time
    14:00 - 15:00
    LecturerProf. Valery Krizhanovsky
    Department of Molecular Cell Biology Weizmann Institute of Science
    Organizer
    Dwek Institute for Cancer Therapy Research
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    Lecture
  • Date:17SundayJanuary 2021

    Quantitative Prediction of Nanoparticle Assembly for Personalized Nanomedicine

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    Time
    11:00 - 12:00
    LecturerProf. Yosi Shamay
    Dept Biomedical Engineering, Technion
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Zoom Link: https://weizmann.zoom.us/j/92447973616?pwd=UWJkR...»
    Zoom Link: https://weizmann.zoom.us/j/92447973616?pwd=UWJkRWdraGFVQjdPb3ByWis1bDk2Zz09

    Development of targeted nanoparticle for personalized cancer therapeutics often requires complex synthetic schemes involving both supramolecular self-assembly and multiple chemical modifications. These processes are generally difficult to predict, execute, and control. I will describe a new method to accurately and quantitatively predict self-assembly of kinase inhibitors drug molecules into nanoparticles based on their molecular structures. The drugs assemble with the aid of new kind of excipient comprised of highly conjugated sulfated molecule into particles with ultra-high drug loadings of up to 90%. Using quantitative structure-nanoparticle assembly prediction (QSNAP) calculations and machine learning, a new algorithm was developed as highly predictive indicators of both nano-self assembly and nanoparticle size with unprecedented accuracy.
    Lecture
  • Date:17SundayJanuary 2021

    Departmental seminar with Anna Uzonyi

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    Time
    13:00 - 13:30
    Organizer
    Department of Molecular Genetics
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