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February 21, 2016
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Date:29TuesdayDecember 2020Academic Events
Scientific Council meeting
More information Time 14:00 - 16:00Contact -
Date:31ThursdayDecember 2020Lecture
1H LF NMR Sensor Application for Monitoring of PUFA-rich Healthy Food Autoxidation
More information Time 09:30 - 10:30Lecturer Prof. Zeev Wiesman, Ana Naamat
Department of Biotechnology Engineering Ben Gurion University of the NegevOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Abstract: The present seminar will review our work in 1H LF ...» Abstract: The present seminar will review our work in 1H LF NMR energy relaxation time technology and its application in chemical and morphological characterization and monitoring of oxidation of polyunsaturated fatty acids (PUFA) found in many important commercial products such as edible oils, foods, and biological systems. PUFA’s aggregates are related simultaneously with material’s functionality and degradation. The multiple double bonds and allylic carbons characteristics of the PUFA’s molecular structure are responsible for its oxidation susceptibility and can result in the degrade of the product’s functionality and formation of toxic substances. Wherein individual PUFA molecules have specific structures their material functionality and stability against oxidation are strongly depended on their aggregate structures such as in oils or within aqueous emulsions and specific arrangements within these structures with other components such as antioxidants is an important material parameter.
The oxidation degree of PUFA’s rich materials can be measured via different methods such as volumetric, spectroscopic and chromatographic technologies. The traditional technologies based on titrimetric techniques have many drawbacks. These methods need strict time regimes during individual stages of analyzes, control of the intensity of the agitation and control of reaction components including light and atmospheric oxygen exposure. Other disadvantage of these traditional methodologies is the requirement of a large amount of solvents, being environmental unfriendly. In order to overcome the disadvantages of the traditional technologies used to monitor oxidation we are suggesting the use 1H LF NMR relaxation. This technology does not require organic solvents, complex samples preparation and the sample is preserved after analysis. The 1H LF NMR generates 2D T1 (spin-lattice) vs. T2 (spin-spin) energy relaxation time domain that is able together with self-diffusion test to characterize chemical and morphologically complex aggregate materials such as PUFA in liquid or solid assembly or in presence of interfacial forces of water. In addition, these spectra can efficiently monitor oxidation and assess antioxidants efficacy.
We demonstrate the work we have done to date on the 1H LF NMR data processing optimization and the application of this technology in the characterization and monitoring of oxidation on oils on fatty acids saturated, monounsaturated and polyunsaturated. This sensor application is of relevant contributions for diverse fields such as food industries, pharmaceuticals, cosmetics and biofuels.
The seminar is divided into three parts:
a) Optimization of the ILT data processing technology of 1H LF NMR energy relaxation time. This study showed the efficiency of the regularization parameters for data reconstruction, and a relative high accuracy of the primal dual convex objectives (PDCO) solutions in comparison to the graphic results of real data.
b) Developing of intelligent NMR relaxation sensor applications of fatty acids (FA) with saturated chains, MUFA and PUFA-rich oils for their chemical and physical/morphological characterization and monitoring of their autoxidation. Detailed fingerprinting chemical and morphological maps
were generated for saturated FAs, MUFAs, PUFAs and their oxidation polymerized final products. It was possible to propose peak assignments to the various spin-lattice (T1) and spin –spin (T2) energy relaxation time proton populations (TD) based on the molecular segmental motions of the different fatty acids chemical and structural segments (e.g., glycerol; double bonds; aliphatic chains; and tails) to generate an explicatory dictionary of T1 and T2 values with chemical and physical/morphological structures and their changes due to oxidation.
c) Developing of intelligent 1H LF NMR energy relaxation time domain sensor application for PUFA-rich oil-in-water emulsions characterization and monitoring autoxidation. Emulsions based on linseeds, very rich in α-linolenic acid PUFA (18:3) and structural oleosin protein and other emulsification agents naturally producing nano-scale oxidation stable oil bodies, were formed from linseed in water. The linseed emulsions enriched with PUFA-rich fish oil were analyzed under thermal oxidation conditions, using 1H LF NMR T1-T2 energy relaxation time reconstruction for determining the oil bodies composition and structure and oxidative stability. -
Date:03SundayJanuary 2021Lecture
PCR-free sensing of Covid-19, metastatic mRNA biomarkers and towards single-cell proteomic
More information Time 11:00 - 12:00Lecturer Prof. Amit Meller
Department of Biomedical Engineering, TechnionOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Zoom Link: https://weizmann.zoom.us/j/98521602060?pwd=T1B1T...» Zoom Link: https://weizmann.zoom.us/j/98521602060?pwd=T1B1TEJqcXEwUW50QzBEaXd3RS9XZz09
SARS-CoV-2 outbreak of the coronavirus disease (COVID-19) has underlined the acute need for extremely sensitive, accurate, fast, point-of-care mRNA quantification sensors. Here I will show how solid-state nanopores can be used to digitally count target mRNA molecules from both biological and clinical Covid-19 samples surpassing the accuracy and gold-standard” RT-qPCR. Additionally, we applied our method for the sensing of cancer metastatic mRNA biomarkers MACC1 and S100A4 at early stage of the diseases, suggesting a potential use of the method in early precision medicine diagnostics. Moving beyond nucleic acids, I will discuss our on-going efforts towards the use of plasmonic nanopore devices for the single protein molecules identification based on partial labelling of only two or three amino acids. This research opens up vast directions for single-cell proteomics of even rarely expressed proteins. -
Date:03SundayJanuary 2021Lecture
Special Guest Seminar
More information Time 15:00 - 16:30Title "Socializing with the Neighbors: Stem Cells Reshape Their Environment to Coordinate Tissue Regeneration."Lecturer Dr. Shiri Gur-Cohen Contact -
Date:05TuesdayJanuary 2021Lecture
DeepMind solves a 50-year-old problem; or finally, atomically accurate protein-structure prediction
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Sarel Fleishman
Dept. of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Proteins are the most complex molecules we know, and yet the...» Proteins are the most complex molecules we know, and yet the majority fold into a unique structure. Predicting the structure of a protein directly from its amino acid sequence has been a 50-year-old challenge. Early advances in understanding the physical basis for protein folding and stability were effective in predicting the structures only of small proteins, but over the past decade, data-driven methods have made important advances towards predicting large protein structures. In a remarkable breakthrough reported last month, a deep-learning method finally exhibited atomically accurate predictions across a broad range of difficult targets in a blind community-wide assessment. I will review the main milestones on the way to this breakthrough and provide my (subjective) view of its significance for the future of molecular biology. -
Date:05TuesdayJanuary 2021Lecture
Nanoinclusions in diamonds: trapped fluids and solid molecular N2 and CO2
More information Time 11:00 - 11:00Location https://weizmann.zoom.us/j/7621438333?pwd=c0lpdlQzYSthellXWG9rZnM0ZDRFZz09Lecturer Oded Navon
Institute of Earth Sciences The Hebrew University of JerusalemOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about Diamonds are perfect boxes for delivering samples of fluids ...» Diamonds are perfect boxes for delivering samples of fluids and volatile species from the mantle to the surface. While mineral inclusions are often a few >30 micrometer in size and allow easy analysis, fluid inclusions are mostly -
Date:05TuesdayJanuary 2021Lecture
Guest Seminar via Zoom - Plant and Environmental Sciences Dept.
More information Time 11:30 - 12:30Title Wild emmer wheat alleles promote drought adaptation mechanisms for changing climateLocation https://weizmann.zoom.us/j/97676258635?pwd=VGRFM3F1dXVMWFN4OFRvVzZZVlh3QT09 Password: 118210Lecturer Harel Bacher
Ph.D. student with Prof. Zvi Peleg and Prof. Harkamal Walia in a collaboration program, between the Hebrew University of Jerusalem and the University of Nebraska in Lincoln, USAOrganizer Department of Plant and Environmental SciencesContact -
Date:05TuesdayJanuary 2021Lecture
Diffusion properties of intracellular metabolites: compartment specific probes for cell structure and physiology
More information Time 12:30 - 13:30Lecturer Prof. Itamar Ronen
C.J. Gorter Center for High field MRI, Leiden University Medical Center, Leiden, The NetherlandsOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Diffusion weighted MRI (DWI) is the main neuroimaging modali...» Diffusion weighted MRI (DWI) is the main neuroimaging modality used in non-invasive investigations of tissue microstructure, and provides quantitative cytomorphological information on a spatial scale well below the nominal resolution of MRI. The main limitation of DWI is its lack of compartmental specificity, as its “reporter molecule” is water, ubiquitous in all tissue compartments and cell types. Brain metabolites are mostly confined to the intracellular space, and their concentrations vary across cell types. Several metabolites give rise to quantifiable magnetic resonance spectroscopy (MRS) signatures, and are thus considered as compartment-specific and sometimes cell-specific markers. Sensitization of MRS to diffusion results in a set of diffusion properties for a variety of intracellular metabolites, from which microstructural information specific to the intracellular space can be obtained. A proper choice of experimental settings can be used to investigate properties that range from cytoplasmic viscosity and tortuosity of the intracellular space, to overall cell morphological features. The specificity of some metabolites to different cell types such as neurons and astrocytes opens the way to studying morphological properties of different cell populations and monitoring their modulation by physiological changes in health and disease.
The presentation will introduce methodological concepts of diffusion-weighted MRS, followed by simple examples that demonstrate the unique ability of diffusion-weighted MRS to characterize cell-type specific structural features. Special emphasis will be bestowed on experimental and modelling frameworks that merge the specificity of diffusion-weighted MRS with the sensitivity of DWI to gain insights on tissue microstructure beyond what each method can separately provide.
Zoom link to join:https://weizmann.zoom.us/j/96608033618?pwd=SEdJUkR2ZzRBZ3laUUdGbWR1VFJTdz09
Meeting ID: 966 0803 3618
Password: 564068
Host: Dr. Rita Schmidt rita.schmidt@weizmann.ac.il tel: 9070
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Date:06WednesdayJanuary 202107ThursdayJanuary 2021Conference
MicroEco 2020
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Noa Barak and Keren Yanuka-GolubHomepage -
Date:06WednesdayJanuary 2021Lecture
Heterologous Protein Expression and Production Platforms
More information Time 09:00 - 10:00Location ZOOMLecturer Dr. Tamar Unger
Structural Proteomics UnitOrganizer Department of Life Sciences Core FacilitiesHomepage Contact -
Date:06WednesdayJanuary 2021Lecture
M.Sc thesis defense: Band gaps of crystalline solids from a Wannier-localized, optimally tuned screened range-separated hybrid functional
More information Time 14:30 - 15:30Lecturer Guy Ohad, Ana Naamat Organizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about https://weizmann.zoom.us/j/93597285944?pwd=S0FJdHJ6eVpFTGJ3d...» https://weizmann.zoom.us/j/93597285944?pwd=S0FJdHJ6eVpFTGJ3dHJHa3c1amJyUT09
Abstract:
A long-standing challenge within density functional theory (DFT) is the development of functionals that accurately predict the band gap and electronic structure of crystalline solids. A promising candidate for this task is the screened range-separated hybrid (SRSH) functional, which has been shown to yield accurate results for finite systems when one of the parameters in the functional, the range-separation parameter, is selected a priori. In the bulk limit, however, this parameter cannot be selected non-empirically based on the ionization potential theorem, owing to the delocalized electronic orbitals. Recently, we have developed a new method for the non-empirical tuning of the range-separation parameter, that is based on the removal of an electron in a state that corresponds to a Wannier function. We have applied the method to a set of systems ranging from narrow band gap semiconductors to large band gap insulators, obtaining fundamental band gaps in excellent agreement with experiment.
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Date:07ThursdayJanuary 2021Lecture
Special zoom joint guest seminar
More information Time 11:00 - 12:00Title “The mystery of the malaria plastid: Molecular Genetics to the Rescue”Location https://weizmann.zoom.us/j/99687213443?pwd=bUZoV2R3UmorNmxUREdYTnNTd3BUQT09Lecturer Dr. Anat Florentin Organizer Department of Molecular GeneticsContact -
Date:10SundayJanuary 202115FridayJanuary 2021Conference
The VI-th International Conference on the Initial Stages of High-Energy Nuclear Collisions
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Alexander MilovHomepage -
Date:10SundayJanuary 2021Lecture
Departmental seminar with Nelly Frenkel
More information Time 13:00 - 13:30Title “Chromatin modifications and the s-phase replication checkpoint as determinants of DNA replication dynamics”Lecturer Dr. Nelly Frenkel Organizer Department of Molecular GeneticsHomepage Contact -
Date:11MondayJanuary 2021Lecture
Special Guest Seminar
More information Time 16:00 - 17:30Title "Dietary sulfur amino acids modulate kidney function and anti-tumor immunity via the gut microbiota"Lecturer Dr. Lior Lobel Contact -
Date:13WednesdayJanuary 2021Lecture
Primordial black holes as dark matter: The good, the bad and the ugly
More information Time 11:00 - 11:00Lecturer Prof.Alfredo Urbano
Sapienza University of RomeOrganizer Department of Particle Physics and AstrophysicsHomepage Contact Abstract Show full text abstract about In this seminar, I will consider the possibility that the to...» In this seminar, I will consider the possibility that the totality of dark matter consists of atomic-size black holes of primordial origin. I will review the basics of this proposal, and I will discuss some key questions yet unsolved. -
Date:14ThursdayJanuary 2021Lecture
‘Identification of Dynamic Components in the Liquid-Liquid Phase Separation of CPEB4 by EPR Spectroscopy’
More information Time 09:30 - 10:30Lecturer Dr. Manas Seal
Dept Chemical and Biological Physics, WISOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Link: https://weizmann.zoom.us/j/96046369379?pwd=emp0U0wwcm...» Link: https://weizmann.zoom.us/j/96046369379?pwd=emp0U0wwcmpNQlhsMisrNmp0bjRDdz09
Passcode: 693143
The molecular mechanisms and associated structures and dynamics of liquid-liquid phase separation (LLPS) proteins that form membrane-less organelles in cells have attracted considerable interest in recent years. EPR spectroscopy along with site directed spin labelling (SDSL) using nitroxide spin labels is a well-established technique to study dynamics of proteins. In this seminar I will discuss the dynamic properties of the spin labelled low complexity N-terminal domain of cytoplasmic polyadenylation element binding-4 protein (CPEB4NTD) in its LLPS and non-LLPS states. We found the coexistence of three CPEB4NTD populations with distinct spin label rotational correlation times before and after LLPS. We identified population I as the predominant protein species in the dilute phase, with fast motions that agree with expected dynamic properties of monomeric CPEB4NTD. We assigned population III to a compact ensemble that undergo slow motions, and population II to a looser ensemble experiencing intermediate motions. LLPS, which took place with increasing temperature is associated with increased population of II at the expense of III, while population I remains constant. At the end based on these findings, I will present a three-component equilibrium model that postulates the existence of LLPS-competent CPEB4NTD species (II and III) prior to macroscopic phase separation. -
Date:14ThursdayJanuary 2021Lecture
Molecular mechanisms of senescence on the crossroads of cancer and aging
More information Time 14:00 - 15:00Lecturer Prof. Valery Krizhanovsky
Department of Molecular Cell Biology Weizmann Institute of ScienceOrganizer Dwek Institute for Cancer Therapy ResearchContact -
Date:17SundayJanuary 2021Lecture
Quantitative Prediction of Nanoparticle Assembly for Personalized Nanomedicine
More information Time 11:00 - 12:00Lecturer Prof. Yosi Shamay
Dept Biomedical Engineering, TechnionOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Zoom Link: https://weizmann.zoom.us/j/92447973616?pwd=UWJkR...» Zoom Link: https://weizmann.zoom.us/j/92447973616?pwd=UWJkRWdraGFVQjdPb3ByWis1bDk2Zz09
Development of targeted nanoparticle for personalized cancer therapeutics often requires complex synthetic schemes involving both supramolecular self-assembly and multiple chemical modifications. These processes are generally difficult to predict, execute, and control. I will describe a new method to accurately and quantitatively predict self-assembly of kinase inhibitors drug molecules into nanoparticles based on their molecular structures. The drugs assemble with the aid of new kind of excipient comprised of highly conjugated sulfated molecule into particles with ultra-high drug loadings of up to 90%. Using quantitative structure-nanoparticle assembly prediction (QSNAP) calculations and machine learning, a new algorithm was developed as highly predictive indicators of both nano-self assembly and nanoparticle size with unprecedented accuracy. -
Date:17SundayJanuary 2021Lecture
Departmental seminar with Anna Uzonyi
More information Time 13:00 - 13:30Organizer Department of Molecular GeneticsHomepage Contact
