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April 27, 2017
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Date:05TuesdayJanuary 2021Lecture
DeepMind solves a 50-year-old problem; or finally, atomically accurate protein-structure prediction
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Sarel Fleishman
Dept. of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Proteins are the most complex molecules we know, and yet the...» Proteins are the most complex molecules we know, and yet the majority fold into a unique structure. Predicting the structure of a protein directly from its amino acid sequence has been a 50-year-old challenge. Early advances in understanding the physical basis for protein folding and stability were effective in predicting the structures only of small proteins, but over the past decade, data-driven methods have made important advances towards predicting large protein structures. In a remarkable breakthrough reported last month, a deep-learning method finally exhibited atomically accurate predictions across a broad range of difficult targets in a blind community-wide assessment. I will review the main milestones on the way to this breakthrough and provide my (subjective) view of its significance for the future of molecular biology. -
Date:05TuesdayJanuary 2021Lecture
Nanoinclusions in diamonds: trapped fluids and solid molecular N2 and CO2
More information Time 11:00 - 11:00Location https://weizmann.zoom.us/j/7621438333?pwd=c0lpdlQzYSthellXWG9rZnM0ZDRFZz09Lecturer Oded Navon
Institute of Earth Sciences The Hebrew University of JerusalemOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about Diamonds are perfect boxes for delivering samples of fluids ...» Diamonds are perfect boxes for delivering samples of fluids and volatile species from the mantle to the surface. While mineral inclusions are often a few >30 micrometer in size and allow easy analysis, fluid inclusions are mostly -
Date:05TuesdayJanuary 2021Lecture
Guest Seminar via Zoom - Plant and Environmental Sciences Dept.
More information Time 11:30 - 12:30Title Wild emmer wheat alleles promote drought adaptation mechanisms for changing climateLocation https://weizmann.zoom.us/j/97676258635?pwd=VGRFM3F1dXVMWFN4OFRvVzZZVlh3QT09 Password: 118210Lecturer Harel Bacher
Ph.D. student with Prof. Zvi Peleg and Prof. Harkamal Walia in a collaboration program, between the Hebrew University of Jerusalem and the University of Nebraska in Lincoln, USAOrganizer Department of Plant and Environmental SciencesContact -
Date:05TuesdayJanuary 2021Lecture
Diffusion properties of intracellular metabolites: compartment specific probes for cell structure and physiology
More information Time 12:30 - 13:30Lecturer Prof. Itamar Ronen
C.J. Gorter Center for High field MRI, Leiden University Medical Center, Leiden, The NetherlandsOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Diffusion weighted MRI (DWI) is the main neuroimaging modali...» Diffusion weighted MRI (DWI) is the main neuroimaging modality used in non-invasive investigations of tissue microstructure, and provides quantitative cytomorphological information on a spatial scale well below the nominal resolution of MRI. The main limitation of DWI is its lack of compartmental specificity, as its “reporter molecule” is water, ubiquitous in all tissue compartments and cell types. Brain metabolites are mostly confined to the intracellular space, and their concentrations vary across cell types. Several metabolites give rise to quantifiable magnetic resonance spectroscopy (MRS) signatures, and are thus considered as compartment-specific and sometimes cell-specific markers. Sensitization of MRS to diffusion results in a set of diffusion properties for a variety of intracellular metabolites, from which microstructural information specific to the intracellular space can be obtained. A proper choice of experimental settings can be used to investigate properties that range from cytoplasmic viscosity and tortuosity of the intracellular space, to overall cell morphological features. The specificity of some metabolites to different cell types such as neurons and astrocytes opens the way to studying morphological properties of different cell populations and monitoring their modulation by physiological changes in health and disease.
The presentation will introduce methodological concepts of diffusion-weighted MRS, followed by simple examples that demonstrate the unique ability of diffusion-weighted MRS to characterize cell-type specific structural features. Special emphasis will be bestowed on experimental and modelling frameworks that merge the specificity of diffusion-weighted MRS with the sensitivity of DWI to gain insights on tissue microstructure beyond what each method can separately provide.
Zoom link to join:https://weizmann.zoom.us/j/96608033618?pwd=SEdJUkR2ZzRBZ3laUUdGbWR1VFJTdz09
Meeting ID: 966 0803 3618
Password: 564068
Host: Dr. Rita Schmidt rita.schmidt@weizmann.ac.il tel: 9070
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Date:06WednesdayJanuary 202107ThursdayJanuary 2021Conference
MicroEco 2020
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Noa Barak and Keren Yanuka-GolubHomepage -
Date:06WednesdayJanuary 2021Lecture
Heterologous Protein Expression and Production Platforms
More information Time 09:00 - 10:00Location ZOOMLecturer Dr. Tamar Unger
Structural Proteomics UnitOrganizer Department of Life Sciences Core FacilitiesHomepage Contact -
Date:06WednesdayJanuary 2021Lecture
M.Sc thesis defense: Band gaps of crystalline solids from a Wannier-localized, optimally tuned screened range-separated hybrid functional
More information Time 14:30 - 15:30Lecturer Guy Ohad, Ana Naamat Organizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about https://weizmann.zoom.us/j/93597285944?pwd=S0FJdHJ6eVpFTGJ3d...» https://weizmann.zoom.us/j/93597285944?pwd=S0FJdHJ6eVpFTGJ3dHJHa3c1amJyUT09
Abstract:
A long-standing challenge within density functional theory (DFT) is the development of functionals that accurately predict the band gap and electronic structure of crystalline solids. A promising candidate for this task is the screened range-separated hybrid (SRSH) functional, which has been shown to yield accurate results for finite systems when one of the parameters in the functional, the range-separation parameter, is selected a priori. In the bulk limit, however, this parameter cannot be selected non-empirically based on the ionization potential theorem, owing to the delocalized electronic orbitals. Recently, we have developed a new method for the non-empirical tuning of the range-separation parameter, that is based on the removal of an electron in a state that corresponds to a Wannier function. We have applied the method to a set of systems ranging from narrow band gap semiconductors to large band gap insulators, obtaining fundamental band gaps in excellent agreement with experiment.
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Date:07ThursdayJanuary 2021Lecture
Special zoom joint guest seminar
More information Time 11:00 - 12:00Title “The mystery of the malaria plastid: Molecular Genetics to the Rescue”Location https://weizmann.zoom.us/j/99687213443?pwd=bUZoV2R3UmorNmxUREdYTnNTd3BUQT09Lecturer Dr. Anat Florentin Organizer Department of Molecular GeneticsContact -
Date:10SundayJanuary 202115FridayJanuary 2021Conference
The VI-th International Conference on the Initial Stages of High-Energy Nuclear Collisions
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Alexander MilovHomepage -
Date:10SundayJanuary 2021Lecture
Departmental seminar with Nelly Frenkel
More information Time 13:00 - 13:30Title “Chromatin modifications and the s-phase replication checkpoint as determinants of DNA replication dynamics”Lecturer Dr. Nelly Frenkel Organizer Department of Molecular GeneticsHomepage Contact -
Date:11MondayJanuary 2021Lecture
Special Guest Seminar
More information Time 16:00 - 17:30Title "Dietary sulfur amino acids modulate kidney function and anti-tumor immunity via the gut microbiota"Lecturer Dr. Lior Lobel Contact -
Date:13WednesdayJanuary 2021Lecture
Primordial black holes as dark matter: The good, the bad and the ugly
More information Time 11:00 - 11:00Lecturer Prof.Alfredo Urbano
Sapienza University of RomeOrganizer Department of Particle Physics and AstrophysicsHomepage Contact Abstract Show full text abstract about In this seminar, I will consider the possibility that the to...» In this seminar, I will consider the possibility that the totality of dark matter consists of atomic-size black holes of primordial origin. I will review the basics of this proposal, and I will discuss some key questions yet unsolved. -
Date:14ThursdayJanuary 2021Lecture
‘Identification of Dynamic Components in the Liquid-Liquid Phase Separation of CPEB4 by EPR Spectroscopy’
More information Time 09:30 - 10:30Lecturer Dr. Manas Seal
Dept Chemical and Biological Physics, WISOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Link: https://weizmann.zoom.us/j/96046369379?pwd=emp0U0wwcm...» Link: https://weizmann.zoom.us/j/96046369379?pwd=emp0U0wwcmpNQlhsMisrNmp0bjRDdz09
Passcode: 693143
The molecular mechanisms and associated structures and dynamics of liquid-liquid phase separation (LLPS) proteins that form membrane-less organelles in cells have attracted considerable interest in recent years. EPR spectroscopy along with site directed spin labelling (SDSL) using nitroxide spin labels is a well-established technique to study dynamics of proteins. In this seminar I will discuss the dynamic properties of the spin labelled low complexity N-terminal domain of cytoplasmic polyadenylation element binding-4 protein (CPEB4NTD) in its LLPS and non-LLPS states. We found the coexistence of three CPEB4NTD populations with distinct spin label rotational correlation times before and after LLPS. We identified population I as the predominant protein species in the dilute phase, with fast motions that agree with expected dynamic properties of monomeric CPEB4NTD. We assigned population III to a compact ensemble that undergo slow motions, and population II to a looser ensemble experiencing intermediate motions. LLPS, which took place with increasing temperature is associated with increased population of II at the expense of III, while population I remains constant. At the end based on these findings, I will present a three-component equilibrium model that postulates the existence of LLPS-competent CPEB4NTD species (II and III) prior to macroscopic phase separation. -
Date:14ThursdayJanuary 2021Lecture
Molecular mechanisms of senescence on the crossroads of cancer and aging
More information Time 14:00 - 15:00Lecturer Prof. Valery Krizhanovsky
Department of Molecular Cell Biology Weizmann Institute of ScienceOrganizer Dwek Institute for Cancer Therapy ResearchContact -
Date:17SundayJanuary 2021Lecture
Quantitative Prediction of Nanoparticle Assembly for Personalized Nanomedicine
More information Time 11:00 - 12:00Lecturer Prof. Yosi Shamay
Dept Biomedical Engineering, TechnionOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Zoom Link: https://weizmann.zoom.us/j/92447973616?pwd=UWJkR...» Zoom Link: https://weizmann.zoom.us/j/92447973616?pwd=UWJkRWdraGFVQjdPb3ByWis1bDk2Zz09
Development of targeted nanoparticle for personalized cancer therapeutics often requires complex synthetic schemes involving both supramolecular self-assembly and multiple chemical modifications. These processes are generally difficult to predict, execute, and control. I will describe a new method to accurately and quantitatively predict self-assembly of kinase inhibitors drug molecules into nanoparticles based on their molecular structures. The drugs assemble with the aid of new kind of excipient comprised of highly conjugated sulfated molecule into particles with ultra-high drug loadings of up to 90%. Using quantitative structure-nanoparticle assembly prediction (QSNAP) calculations and machine learning, a new algorithm was developed as highly predictive indicators of both nano-self assembly and nanoparticle size with unprecedented accuracy. -
Date:17SundayJanuary 2021Lecture
Departmental seminar with Anna Uzonyi
More information Time 13:00 - 13:30Organizer Department of Molecular GeneticsHomepage Contact -
Date:19TuesdayJanuary 2021Lecture
"Harnessing the CRISPR toolbox to engineer biology"
More information Time 10:00 - 11:00Location Via Zoom: https://weizmann.zoom.us/j/93358772888?pwd=Z1ZIeWs3NWdkMXYyK1RVbjQvNUxVUT09Lecturer Prof. Randall Jeffrey Platt
Dept. of Biosystems Science and Engineering (D-BSSE)at ETH ZurichOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Summary: Molecular technologies enabling the high throughpu...» Summary:
Molecular technologies enabling the high throughput interrogation of genetic elements fuels our capacity to understand and control complex biological systems. With current methodologies used in the field of biomedicine the rate at which genes are being associated with biological and disease processes has drastically outstripped the pace at which their causality can be tested and understood. In this lecture you will hear about how we are harnessing the CRISPR toolbox to engineer biology and bridge this gap.
Bio:
Randy Platt studied biomedical engineering and chemistry at the University of Utah in Salt Lake City, Utah. In 2011 he obtained an MPhil from Imperial College London in material science and in 2015 a PhD from MIT in biological engineering. After a postdoctoral fellowship joint between MIT, Harvard University, and the Broad Institute he was appointed as a tenure-track assistant professor in the Department of Biosystems Science and Engineering (D-BSSE) at ETH Zurich and the Department of Chemistry at the University of Basel in October 2016.
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Date:19TuesdayJanuary 2021Lecture
The Cortical-Hippocampal Interplay during Episodic Memory Retrieval in Humans
More information Time 10:00 - 11:00Lecturer Yitzhak Norman (PhD Thesis Defense)
Prof. Rafi Malach Lab, Department of NeurobiologyOrganizer Department of Brain SciencesContact Abstract Show full text abstract about One of the most remarkable functions of the human brain is t...» One of the most remarkable functions of the human brain is the ability to recall a personal experience from the past and reenact it vividly in our mind, in a way that allows us to reflect upon the memory and derive from it relevant information that can guide our future behavior. My doctoral research explored the neuronal mechanisms that enable this core cognitive function in the human brain. Using rare electrophysiological recordings obtained from neurosurgical patients for clinical purposes I investigated and characterized the complex bidirectional interactions that occur between the hippocampus and the cerebral cortex during retrieval of conscious, reportable memories.
My results are twofold. I first show that 1-2 seconds before the onset of individual recollections the hippocampus elicits transient electrical oscillations known as Sharp Wave Ripples (SWRs). Such oscillatory events have been extensively studied in animal models in recent years and were shown to reflect massive synchronization events during which millions of pyramidal neurons on the hippocampus output pathway fire simultaneously. My results demonstrate that the SWR events are selective to memory contents and play a major role in coordinating the re-activation of hippocampal-neocortical memory representations during retrieval. I show a tight coupling between SWR events and visual cortex activation, and reveal a massive peri-ripple activation of the default mode network. Second, I show that the cortex uses a flexible, goal-directed, "baseline shift" mechanism that allows the imposition of predefined boundaries on spontaneous recollections. Specifically, the results demonstrate that when free recall is limited to a particular category, the average neuronal activity level in cortical sites that represent the targeted category is steadily and significantly enhanced throughout the free recall period. Such steady-state excitatory enhancement is likely to introduce a category-specific bias in the cortical input arriving at the hippocampus, which may facilitate the reactivation of memory traces belonging to the targeted category and not others.
Altogether, the results place hippocampal SWRs firmly as a central mechanism in the retrieval of human declarative memory. They demonstrate a central role for SWRs in coordinating the hippocampus-cortical dialogue during recollection and point to a flexible "baseline shift" mechanism that can account for the remarkable ease and precision by which we can constrain this dialogue to support retrieval goals.
Zoom link to join: https://weizmann.zoom.us/j/92146113977?pwd=VmhuMEhBcTRYZDNWMVJ4bGJrR0lIdz09
Meeting ID: 92146113977
Password: 803220
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Date:19TuesdayJanuary 2021Lecture
In situ identification of 48-56.0 million old proteins in chert with unusually high stiffness
More information Time 11:00 - 11:00Lecturer Filipe Natalio
Scientific Archaeology Unit Weizmann Institute of ScienceOrganizer Department of Earth and Planetary SciencesContact -
Date:19TuesdayJanuary 2021Lecture
Getting to the root of plant drought response: the role of lipoxygenases and singlet oxygen
More information Time 11:30 - 12:30Title Dept. Seminar via ZoomLocation https://weizmann.zoom.us/j/99241697059?pwd=L3UxVnNIUk14TWRQNThxVDBVYlZNdz09 Password: 352487Lecturer Dr. Tomer Chen
Prof. Robert Fluhr's lab. Dept. of Plant and Environmental SciencesOrganizer Department of Plant and Environmental SciencesContact
