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April 27, 2017

  • Date:05TuesdayJanuary 2021

    DeepMind solves a 50-year-old problem; or finally, atomically accurate protein-structure prediction

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    Time
    10:00 - 11:00
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerProf. Sarel Fleishman
    Dept. of Biomolecular Sciences-WIS
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about Proteins are the most complex molecules we know, and yet the...»
    Proteins are the most complex molecules we know, and yet the majority fold into a unique structure. Predicting the structure of a protein directly from its amino acid sequence has been a 50-year-old challenge. Early advances in understanding the physical basis for protein folding and stability were effective in predicting the structures only of small proteins, but over the past decade, data-driven methods have made important advances towards predicting large protein structures. In a remarkable breakthrough reported last month, a deep-learning method finally exhibited atomically accurate predictions across a broad range of difficult targets in a blind community-wide assessment. I will review the main milestones on the way to this breakthrough and provide my (subjective) view of its significance for the future of molecular biology.
    Lecture
  • Date:05TuesdayJanuary 2021

    Nanoinclusions in diamonds: trapped fluids and solid molecular N2 and CO2

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    Time
    11:00 - 11:00
    Location
    https://weizmann.zoom.us/j/7621438333?pwd=c0lpdlQzYSthellXWG9rZnM0ZDRFZz09
    LecturerOded Navon
    Institute of Earth Sciences The Hebrew University of Jerusalem
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    AbstractShow full text abstract about Diamonds are perfect boxes for delivering samples of fluids ...»
    Diamonds are perfect boxes for delivering samples of fluids and volatile species from the mantle to the surface. While mineral inclusions are often a few >30 micrometer in size and allow easy analysis, fluid inclusions are mostly
    Lecture
  • Date:05TuesdayJanuary 2021

    Guest Seminar via Zoom - Plant and Environmental Sciences Dept.

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    Time
    11:30 - 12:30
    Title
    Wild emmer wheat alleles promote drought adaptation mechanisms for changing climate
    Location
    https://weizmann.zoom.us/j/97676258635?pwd=VGRFM3F1dXVMWFN4OFRvVzZZVlh3QT09 Password: 118210
    LecturerHarel Bacher
    Ph.D. student with Prof. Zvi Peleg and Prof. Harkamal Walia in a collaboration program, between the Hebrew University of Jerusalem and the University of Nebraska in Lincoln, USA
    Organizer
    Department of Plant and Environmental Sciences
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    Lecture
  • Date:05TuesdayJanuary 2021

    Diffusion properties of intracellular metabolites: compartment specific probes for cell structure and physiology

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    Time
    12:30 - 13:30
    LecturerProf. Itamar Ronen
    C.J. Gorter Center for High field MRI, Leiden University Medical Center, Leiden, The Netherlands
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Diffusion weighted MRI (DWI) is the main neuroimaging modali...»
    Diffusion weighted MRI (DWI) is the main neuroimaging modality used in non-invasive investigations of tissue microstructure, and provides quantitative cytomorphological information on a spatial scale well below the nominal resolution of MRI. The main limitation of DWI is its lack of compartmental specificity, as its “reporter molecule” is water, ubiquitous in all tissue compartments and cell types. Brain metabolites are mostly confined to the intracellular space, and their concentrations vary across cell types. Several metabolites give rise to quantifiable magnetic resonance spectroscopy (MRS) signatures, and are thus considered as compartment-specific and sometimes cell-specific markers. Sensitization of MRS to diffusion results in a set of diffusion properties for a variety of intracellular metabolites, from which microstructural information specific to the intracellular space can be obtained. A proper choice of experimental settings can be used to investigate properties that range from cytoplasmic viscosity and tortuosity of the intracellular space, to overall cell morphological features. The specificity of some metabolites to different cell types such as neurons and astrocytes opens the way to studying morphological properties of different cell populations and monitoring their modulation by physiological changes in health and disease.
    The presentation will introduce methodological concepts of diffusion-weighted MRS, followed by simple examples that demonstrate the unique ability of diffusion-weighted MRS to characterize cell-type specific structural features. Special emphasis will be bestowed on experimental and modelling frameworks that merge the specificity of diffusion-weighted MRS with the sensitivity of DWI to gain insights on tissue microstructure beyond what each method can separately provide.

    Zoom link to join:https://weizmann.zoom.us/j/96608033618?pwd=SEdJUkR2ZzRBZ3laUUdGbWR1VFJTdz09
    Meeting ID: 966 0803 3618
    Password: 564068

    Host: Dr. Rita Schmidt rita.schmidt@weizmann.ac.il tel: 9070




    Lecture
  • Date:06WednesdayJanuary 202107ThursdayJanuary 2021

    MicroEco 2020

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    Time
    08:00 - 08:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Noa Barak and Keren Yanuka-Golub
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    Conference
  • Date:06WednesdayJanuary 2021

    Heterologous Protein Expression and Production Platforms

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    Time
    09:00 - 10:00
    Location
    ZOOM
    LecturerDr. Tamar Unger
    Structural Proteomics Unit
    Organizer
    Department of Life Sciences Core Facilities
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    Lecture
  • Date:06WednesdayJanuary 2021

    M.Sc thesis defense: Band gaps of crystalline solids from a Wannier-localized, optimally tuned screened range-separated hybrid functional

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    Time
    14:30 - 15:30
    LecturerGuy Ohad, Ana Naamat
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about https://weizmann.zoom.us/j/93597285944?pwd=S0FJdHJ6eVpFTGJ3d...»
    https://weizmann.zoom.us/j/93597285944?pwd=S0FJdHJ6eVpFTGJ3dHJHa3c1amJyUT09

    Abstract:
    A long-standing challenge within density functional theory (DFT) is the development of functionals that accurately predict the band gap and electronic structure of crystalline solids. A promising candidate for this task is the screened range-separated hybrid (SRSH) functional, which has been shown to yield accurate results for finite systems when one of the parameters in the functional, the range-separation parameter, is selected a priori. In the bulk limit, however, this parameter cannot be selected non-empirically based on the ionization potential theorem, owing to the delocalized electronic orbitals. Recently, we have developed a new method for the non-empirical tuning of the range-separation parameter, that is based on the removal of an electron in a state that corresponds to a Wannier function. We have applied the method to a set of systems ranging from narrow band gap semiconductors to large band gap insulators, obtaining fundamental band gaps in excellent agreement with experiment.
    Lecture
  • Date:07ThursdayJanuary 2021

    Special zoom joint guest seminar

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    Time
    11:00 - 12:00
    Title
    “The mystery of the malaria plastid: Molecular Genetics to the Rescue”
    Location
    https://weizmann.zoom.us/j/99687213443?pwd=bUZoV2R3UmorNmxUREdYTnNTd3BUQT09
    LecturerDr. Anat Florentin
    Organizer
    Department of Molecular Genetics
    Contact
    Lecture
  • Date:10SundayJanuary 202115FridayJanuary 2021

    The VI-th International Conference on the Initial Stages of High-Energy Nuclear Collisions

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    Time
    08:00 - 08:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Alexander Milov
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    Conference
  • Date:10SundayJanuary 2021

    Departmental seminar with Nelly Frenkel

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    Time
    13:00 - 13:30
    Title
    “Chromatin modifications and the s-phase replication checkpoint as determinants of DNA replication dynamics”
    LecturerDr. Nelly Frenkel
    Organizer
    Department of Molecular Genetics
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    Lecture
  • Date:11MondayJanuary 2021

    Special Guest Seminar

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    Time
    16:00 - 17:30
    Title
    "Dietary sulfur amino acids modulate kidney function and anti-tumor immunity via the gut microbiota"
    LecturerDr. Lior Lobel
    Contact
    Lecture
  • Date:13WednesdayJanuary 2021

    Primordial black holes as dark matter: The good, the bad and the ugly

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    Time
    11:00 - 11:00
    LecturerProf.Alfredo Urbano
    Sapienza University of Rome
    Organizer
    Department of Particle Physics and Astrophysics
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    Contact
    AbstractShow full text abstract about In this seminar, I will consider the possibility that the to...»
    In this seminar, I will consider the possibility that the totality of dark matter consists of atomic-size black holes of primordial origin. I will review the basics of this proposal, and I will discuss some key questions yet unsolved.
    Lecture
  • Date:14ThursdayJanuary 2021

    ‘Identification of Dynamic Components in the Liquid-Liquid Phase Separation of CPEB4 by EPR Spectroscopy’

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    Time
    09:30 - 10:30
    LecturerDr. Manas Seal
    Dept Chemical and Biological Physics, WIS
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Link: https://weizmann.zoom.us/j/96046369379?pwd=emp0U0wwcm...»
    Link: https://weizmann.zoom.us/j/96046369379?pwd=emp0U0wwcmpNQlhsMisrNmp0bjRDdz09
    Passcode: 693143


    The molecular mechanisms and associated structures and dynamics of liquid-liquid phase separation (LLPS) proteins that form membrane-less organelles in cells have attracted considerable interest in recent years. EPR spectroscopy along with site directed spin labelling (SDSL) using nitroxide spin labels is a well-established technique to study dynamics of proteins. In this seminar I will discuss the dynamic properties of the spin labelled low complexity N-terminal domain of cytoplasmic polyadenylation element binding-4 protein (CPEB4NTD) in its LLPS and non-LLPS states. We found the coexistence of three CPEB4NTD populations with distinct spin label rotational correlation times before and after LLPS. We identified population I as the predominant protein species in the dilute phase, with fast motions that agree with expected dynamic properties of monomeric CPEB4NTD. We assigned population III to a compact ensemble that undergo slow motions, and population II to a looser ensemble experiencing intermediate motions. LLPS, which took place with increasing temperature is associated with increased population of II at the expense of III, while population I remains constant. At the end based on these findings, I will present a three-component equilibrium model that postulates the existence of LLPS-competent CPEB4NTD species (II and III) prior to macroscopic phase separation.
    Lecture
  • Date:14ThursdayJanuary 2021

    Molecular mechanisms of senescence on the crossroads of cancer and aging

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    Time
    14:00 - 15:00
    LecturerProf. Valery Krizhanovsky
    Department of Molecular Cell Biology Weizmann Institute of Science
    Organizer
    Dwek Institute for Cancer Therapy Research
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    Lecture
  • Date:17SundayJanuary 2021

    Quantitative Prediction of Nanoparticle Assembly for Personalized Nanomedicine

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    Time
    11:00 - 12:00
    LecturerProf. Yosi Shamay
    Dept Biomedical Engineering, Technion
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Zoom Link: https://weizmann.zoom.us/j/92447973616?pwd=UWJkR...»
    Zoom Link: https://weizmann.zoom.us/j/92447973616?pwd=UWJkRWdraGFVQjdPb3ByWis1bDk2Zz09

    Development of targeted nanoparticle for personalized cancer therapeutics often requires complex synthetic schemes involving both supramolecular self-assembly and multiple chemical modifications. These processes are generally difficult to predict, execute, and control. I will describe a new method to accurately and quantitatively predict self-assembly of kinase inhibitors drug molecules into nanoparticles based on their molecular structures. The drugs assemble with the aid of new kind of excipient comprised of highly conjugated sulfated molecule into particles with ultra-high drug loadings of up to 90%. Using quantitative structure-nanoparticle assembly prediction (QSNAP) calculations and machine learning, a new algorithm was developed as highly predictive indicators of both nano-self assembly and nanoparticle size with unprecedented accuracy.
    Lecture
  • Date:17SundayJanuary 2021

    Departmental seminar with Anna Uzonyi

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    Time
    13:00 - 13:30
    Organizer
    Department of Molecular Genetics
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    Lecture
  • Date:19TuesdayJanuary 2021

    "Harnessing the CRISPR toolbox to engineer biology"

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    Time
    10:00 - 11:00
    Location
    Via Zoom: https://weizmann.zoom.us/j/93358772888?pwd=Z1ZIeWs3NWdkMXYyK1RVbjQvNUxVUT09
    LecturerProf. Randall Jeffrey Platt
    Dept. of Biosystems Science and Engineering (D-BSSE)at ETH Zurich
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about Summary: Molecular technologies enabling the high throughpu...»
    Summary:
    Molecular technologies enabling the high throughput interrogation of genetic elements fuels our capacity to understand and control complex biological systems. With current methodologies used in the field of biomedicine the rate at which genes are being associated with biological and disease processes has drastically outstripped the pace at which their causality can be tested and understood. In this lecture you will hear about how we are harnessing the CRISPR toolbox to engineer biology and bridge this gap.

    Bio:
    Randy Platt studied biomedical engineering and chemistry at the University of Utah in Salt Lake City, Utah. In 2011 he obtained an MPhil from Imperial College London in material science and in 2015 a PhD from MIT in biological engineering. After a postdoctoral fellowship joint between MIT, Harvard University, and the Broad Institute he was appointed as a tenure-track assistant professor in the Department of Biosystems Science and Engineering (D-BSSE) at ETH Zurich and the Department of Chemistry at the University of Basel in October 2016.
    Lecture
  • Date:19TuesdayJanuary 2021

    The Cortical-Hippocampal Interplay during Episodic Memory Retrieval in Humans

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    Time
    10:00 - 11:00
    LecturerYitzhak Norman (PhD Thesis Defense)
    Prof. Rafi Malach Lab, Department of Neurobiology
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about One of the most remarkable functions of the human brain is t...»
    One of the most remarkable functions of the human brain is the ability to recall a personal experience from the past and reenact it vividly in our mind, in a way that allows us to reflect upon the memory and derive from it relevant information that can guide our future behavior. My doctoral research explored the neuronal mechanisms that enable this core cognitive function in the human brain. Using rare electrophysiological recordings obtained from neurosurgical patients for clinical purposes I investigated and characterized the complex bidirectional interactions that occur between the hippocampus and the cerebral cortex during retrieval of conscious, reportable memories.
    My results are twofold. I first show that 1-2 seconds before the onset of individual recollections the hippocampus elicits transient electrical oscillations known as Sharp Wave Ripples (SWRs). Such oscillatory events have been extensively studied in animal models in recent years and were shown to reflect massive synchronization events during which millions of pyramidal neurons on the hippocampus output pathway fire simultaneously. My results demonstrate that the SWR events are selective to memory contents and play a major role in coordinating the re-activation of hippocampal-neocortical memory representations during retrieval. I show a tight coupling between SWR events and visual cortex activation, and reveal a massive peri-ripple activation of the default mode network. Second, I show that the cortex uses a flexible, goal-directed, "baseline shift" mechanism that allows the imposition of predefined boundaries on spontaneous recollections. Specifically, the results demonstrate that when free recall is limited to a particular category, the average neuronal activity level in cortical sites that represent the targeted category is steadily and significantly enhanced throughout the free recall period. Such steady-state excitatory enhancement is likely to introduce a category-specific bias in the cortical input arriving at the hippocampus, which may facilitate the reactivation of memory traces belonging to the targeted category and not others.
    Altogether, the results place hippocampal SWRs firmly as a central mechanism in the retrieval of human declarative memory. They demonstrate a central role for SWRs in coordinating the hippocampus-cortical dialogue during recollection and point to a flexible "baseline shift" mechanism that can account for the remarkable ease and precision by which we can constrain this dialogue to support retrieval goals.

    Zoom link to join: https://weizmann.zoom.us/j/92146113977?pwd=VmhuMEhBcTRYZDNWMVJ4bGJrR0lIdz09


    Meeting ID: 92146113977
    Password: 803220

    Lecture
  • Date:19TuesdayJanuary 2021

    In situ identification of 48-56.0 million old proteins in chert with unusually high stiffness

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    Time
    11:00 - 11:00
    LecturerFilipe Natalio
    Scientific Archaeology Unit Weizmann Institute of Science
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    Lecture
  • Date:19TuesdayJanuary 2021

    Getting to the root of plant drought response: the role of lipoxygenases and singlet oxygen

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    Time
    11:30 - 12:30
    Title
    Dept. Seminar via Zoom
    Location
    https://weizmann.zoom.us/j/99241697059?pwd=L3UxVnNIUk14TWRQNThxVDBVYlZNdz09 Password: 352487
    LecturerDr. Tomer Chen
    Prof. Robert Fluhr's lab. Dept. of Plant and Environmental Sciences
    Organizer
    Department of Plant and Environmental Sciences
    Contact
    Lecture

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