Pages
October 01, 2018
-
Date:16TuesdayOctober 2018Lecture
Expeditious Synthesis of Bacterial Glycoconjugates
More information Time 11:00 - 12:00Location Helen and Milton A. Kimmelman BuildingLecturer Prof. Suvarn S. Kulkarni
Indian Institute of Technology BombayOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Expeditious Synthesis of Bacterial Glycoconjugates Suvarn ...» Expeditious Synthesis of Bacterial Glycoconjugates
Suvarn S. Kulkarni
Department of Chemistry, IIT Bombay, Powai, Mumbai-400076
Bacterial glycoconjugates are comprised of rare D and L deoxy amino sugars, which are not present on the human cell surface. This peculiar structural difference allows discrimination between the pathogen and the host cell and offers avenues for target-specific drug discovery and carbohydrate-based vaccine development. However, they cannot be isolated with sufficient purity in acceptable amounts, and therefore chemical synthesis is a crucial step toward the development of these products.1 We recently established short and convenient methodologies for the synthesis of orthogonally protected bacterial D and L-deoxy amino hexopyranoside and glycosamine building blocks starting from cheaply available D-mannose and L-rhamnose.2-4 The one-pot protocols rely on highly regioselective nucleophilic displacements of triflates. These procedures have been applied to the synthesis of various bacterial glycoconjugates2-8 (Figure 1) as well as metabolic oligosaccharide engineering.7
1) Emmadi, M.; Kulkarni, S. S. Nat. Prod. Rep. 2014, 31, 870-879. 2) Emmadi, M.; Kulkarni, S. S. Nature Protocols 2013, 8, 1870-1889. 3) Sanapala, S. R.; Kulkarni S. S. J. Am. Chem. Soc. 2016, 138, 4938−4947. 4) Sanapala, S. R.; Kulkarni S. S. Org. Lett. 2016, 18, 3790–3793. 5) Podilapu, A. R.; Kulkarni, S. S. Org. Lett. 2014, 16, 4336-4339. 6) Sanapala, S. R.; Kulkarni, S. S., Chem. Eur. J. 2014, 20, 3578-3583. 7) Clark, E.; I.; Emmadi, M.; Krupp, K. L.; Podilapu, A. R.; Helble, J. D.; Kulkarni, S. S.; Dube, D. H. ACS Chem Biol 2016, 11, 3365-3373. 8) Podilapu, A. R.; Kulkarni, S. S. Org. Lett. 2017, 19, 5466-5469.
-
Date:16TuesdayOctober 2018Lecture
“Beauty and Benefits of cryo-EM; Resolving the 3D structure of the Type VII secretion system in Mycobacterium tuberculosis”
More information Time 14:00 - 15:00Location Helen and Milton A. Kimmelman BuildingLecturer Prof. Peter Peters
Maastricht Multimodal Molecular Imaging institute (M4I).Organizer Department of Chemical and Structural BiologyContact -
Date:17WednesdayOctober 2018Conference
Promoting longevity: targeting aging and age-related diseases
More information Time 08:00 - 18:00Location The David Lopatie Conference CentreChairperson Valery Krizhanovsky -
Date:17WednesdayOctober 2018Lecture
G-INCPM-Special Seminar - Prof. Rony Seger, Department of Biological Regulation, Weizmann Institute - "Targeting the nuclear translocation of MAPKs as a novel anti-inflammatory and anti cancer therapy"
More information Time 11:00 - 12:15Location Nancy and Stephen Grand Israel National Center for Personalized MedicineOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about A hallmark of MAPK signaling is their nuclear translocation ...» A hallmark of MAPK signaling is their nuclear translocation upon stimulation, which is necessary for their physiological/pathological functions. We have identified two novel, distinct, regulated nuclear translocation mechanisms for ERK1/2 and JNK/p38, of which we made use of as a promising therapeutic approach. We developed a myristoylated, NTS-derived phosphomimetic peptide (EPE peptide), which blocked ERK1/2 nuclear translocation. In culture, the EPE peptide induced apoptosis of melanoma cells, inhibited the proliferation of other cancer cells but had no effect on immortalized cells. Combination of the EPE peptide and the MEK inhibitor had synergistic antitumor activity in mutated NRAS, BRAF and NF1 melanoma and Kras pancreatic cells. In xenograft models, the peptide was significantly more effective than BRAF inhibitors in preventing tumor recurrence of treatment-eradicated melanoma xenografts. We also developed p38-derived myristoylated peptide, termed PERY peptide, which inhibited the importin interaction with JNK1/2 and p38α/β and prevented their nuclear translocation. This peptide affected viability of several breast cancer-derived cell lines, and significantly reduced inflammation and intestinal damage in a mouse model of colitis. Moreover, the peptide inhibited inflammation-induced colorectal cancer in a AOM/DSS mouse model. Taken together, both the cancer and inflammatory models support the use of nuclear translocation of MAPKs as a novel drug target for signaling-related diseases. -
Date:17WednesdayOctober 2018Lecture
Algebraic Geometry and Representation Theory Seminar
More information Time 11:15 - 12:30Title Cyclic Elements in Semisimple Lie AlgebrasLocation Jacob Ziskind BuildingLecturer Professor Elashvili
Razmadze Mathematical InstituteOrganizer Faculty of Mathematics and Computer Science , Department of Computer Science and Applied Mathematics , Department of MathematicsContact -
Date:17WednesdayOctober 2018Lecture
Algebraic Geometry and Representation Theory Seminar
More information Time 11:15 - 12:30Title Cyclic elements in semisimple Lie algebrasLocation Jacob Ziskind BuildingLecturer Alexander Elashvili
Razmadze Mathematical InstituteOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:17WednesdayOctober 2018Lecture
Algebraic Geometry and Representation Theory Seminar
More information Time 11:15 - 12:30Title Cyclic elements in semisimple Lie algebrasLocation Jacob Ziskind BuildingLecturer Alexander Elashvili
Razmadze Mathematical InstituteOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:17WednesdayOctober 2018Lecture
Machine Learning and Statistics Seminar
More information Time 11:15 - 12:30Title Harmonizing Fully Optimal Designs with Classic Randomization in Fixed Trial ExperimentsOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:17WednesdayOctober 2018Lecture
Machine Learning and Statistics Seminar
More information Time 11:15 - 12:30Title Harmonizing Fully Optimal Designs with Classic Randomization in Fixed Trial ExperimentsLecturer Adam Kapelner
Queen's College, NYCOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:17WednesdayOctober 2018Lecture
Algebraic Geometry and Representation Theory Seminar
More information Time 11:15 - 12:30Title Cyclic elements in semisimple Lie algebrasLocation Jacob Ziskind BuildingLecturer Alexander Elashvili
Razmadze Mathematical InstituteOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:18ThursdayOctober 2018Lecture
Information processing at hippocampal synapses
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. J. Simon Wiegert,
Center for Molecular Neurobiology Hamburg (ZMNH) University Medical Center Hamburg-EppendorfOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Synapses change their strength in response to specific activ...» Synapses change their strength in response to specific activity patterns. This functional plasticity is assumed to be the brain’s primary mechanism for information storage. We combine optogenetic and chemogenetic control of synapses in rat hippocampal slice cultures with calcium and glutamate imaging of their spines and boutons. This approach enables us to perform all-optical quantal analysis of synaptic transmission, to induce long-term potentiation (LTP), long-term depression (LTD), or both forms of plasticity in sequence, to chronically manipulate activity and to follow the fate of individual synapses for 7 days. We ask how plasticity and activity are integrated at Schaffer collateral synapses over time. Our findings suggest that activity-dependent changes in the transmission strength of individual synapses are transient, but have long-lasting consequences for synaptic lifetime. -
Date:21SundayOctober 2018Lecture
Memorial Day for Yitzhak Rabin
More information Time 11:00 - 12:30Contact -
Date:21SundayOctober 2018Lecture
Major elements in seawater – a tool for quantifying large-scale processes in the ocean
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Zvika Steiner
University of CambridgeOrganizer Department of Earth and Planetary SciencesContact -
Date:22MondayOctober 2018Colloquia
"Composition-Dependent Functions of Biomolecular Condensates"
More information Time 11:00 - 12:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Michael Rosen
UT Southwestern Medical CenterOrganizer Faculty of ChemistryContact -
Date:22MondayOctober 2018Lecture
G-INCPM - Special Seminar - Dr. Wolfgang Mann, CEO, BlueCatBio GmbH, Germany - "Blue Washer: the most cost-effective tool to improve data quality (z') for adherent cellular assays"
More information Time 11:00 - 12:15Location Nancy and Stephen Grand Israel National Center for Personalized MedicineContact Abstract Show full text abstract about Since its introduction in 2015 the BlueWasher has rapidly be...» Since its introduction in 2015 the BlueWasher has rapidly become the de-facto standard for media change & cell wash in adherent cellular assays.
The BlueWasher uses centrifugation instead of aspiration to remove liquids from all plate formats, including 1536w, eliminating background and variability at their (assay) sources. Highly reproducible residual volumes 10x lower than conventional plate washers enable imagers to produce cleaner images, raising z' 0.1-0.3 for typical adherent cellular assays. Higher z' means to miss fewer active compounds and reduce false positives to re-screen. BlueWasher immediately improves screening economics without complex assay or automation changes, delivering unparalleled ROI and direct boost to overall drug discovery productivity.
A technical introduction into centrifugation based cell wash / media changed will be followed by a number of examples discussing improvement of data quality in HTS / HCS. Other bead based applications like nucleic acids extraction or protein binding assays will be presented as well.
-
Date:22MondayOctober 2018Lecture
Genomic and Epigenomics club
More information Time 11:00 - 12:00Location Camelia Botnar BuildingLecturer Prof. Eske Willerslev Contact -
Date:22MondayOctober 2018Lecture
Targeting DNA and RNA repeats responsible for neurological disorders by small organic molecules
More information Time 14:00 - 15:00Title Special Guest SeminarLocation Max and Lillian Candiotty BuildingLecturer Prof. Kazuhiko Nakatani
Institute of Scientific and Industrial Research, Osaka University, JapanOrganizer Department of Immunology and Regenerative BiologyContact -
Date:22MondayOctober 2018Lecture
Collective formation of territories in scent-marking animal population
More information Time 14:15 - 14:15Location Edna and K.B. Weissman Building of Physical SciencesLecturer Luca Giuggioli
Luca Giuggioli Bristol University, UKOrganizer Department of Physics of Complex SystemsContact Abstract Show full text abstract about While a great deal of studies have been devoted to explain t...» While a great deal of studies have been devoted to explain the emerging patterns observed in schools of fish and flocks of birds, there exist many other animal collective movement phenomena where alignment does not play a role. One important example is the formation of animal territories, a form a spatial segregation relatively common in mammals. When the mechanism of territorial exclusion occurs via marks deposited on the terrain, one talks about stigmergy, a form of environment-mediated interaction often encountered in social insect societies. To study these stigmergic systems in mammals I have introduced the so-called territorial random walk model consisting of a collection of discrete random walkers that (scent) mark any lattice site they visit. As deposited marks remain active for a finite amount of time, each walker retreats upon encountering an active foreign scent. The emerging spatio-temporal dynamics of the system is analysed both at the meso and micro-scale.
At the meso-scale the scented territories can be quite rich. Short-lived marks produce rapidly morphing and highly mobile territories, while long-lived marks yield slow territories with a narrowly defined shape distribution. More importantly the full dependence in territory mobility as a function of the time for which individual marks remain active is accompanied by a liquid-hexatic-solid transition akin to the Kosterlitz-Thouless melting scenario, the first ecological model to predict such a transition.
At the micro-scale, and when population density is sufficiently large, I introduce localized walls to mimic the sharp (retreat) interaction when an animal encounters a foreign scent. A mean-field approximation then allows to represent via a Fokker-Planck formalism an animal roaming within neighbouring territorial boundaries whose movement statistics is subdiffusive and constrained by a spring whose equilibrium length makes the territory size equal to the inverse of the population density. Application of this approximate analytic model to movement data from a red fox population in Bristol, UK, is also shown.
If time allows, I will mention about an algorithmic implementation in the context of territorial searching robots.
References
[1] A. Heiblum-Robles and L. Giuggioli, Phase transitions in stigmergic territorial systems, accepted.
[2] L. Giuggioli, I. Ayre, A. Heiblum Robles and G.A. Kaminka, From ants to birds: a novel bio-inspired approach to on-line area coverage, in Groß R et al. (eds) Distributed Autonomous Robotic Systems, Springer Proceedings in Advanced Robotics, vol 6, pp. 31-43 (2018).
[3] L. Giuggioli and V.M. Kenkre, Consequences of animal interactions on their dynamics: emergence of home ranges and territoriality, Move. Ecol. 2(1), 20 (2014).
[4] L. Giuggioli, J.R. Potts, D.I. Rubenstein and S.A. Levin, Stigmergy, collective actions and animal social spacing, Proc. Natl. Acad. Sci. USA 110(42):16904-9 (2013).
[5] J.R. Potts, S. Harris and L. Giuggioli, Quantifying behavioral changes in territorial animals caused by sudden population declines, Am. Nat. 182:e73-e82 (2013).
[6] L. Giuggioli, J.R. Potts and S. Harris, Predicting oscillatory dynamics in the movement of territorial animals, J. Roy. Soc. Interface 9(72):1529-43 (2012).
[7] J.R. Potts, S. Harris and L. Giuggioli, Territorial dynamics and stable home range formation for central place foragers, PLoS ONE 7(3):e34033 (2012).
[8] L. Giuggioli, J.R. Potts and S. Harris, Brownian walkers within subdiffusing territorial boundaries, Phys. Rev. E 83:061138/1-11 (2011).
[9] L. Giuggioli, J.R. Potts and S. Harris, Animal interactions and the emergence of territoriality, PLoS Comp. Biol. 7(3):e10020
-
Date:23TuesdayOctober 201825ThursdayOctober 2018Conference
Modern teaching methods and soft skills development in science
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Ron Blonder -
Date:23TuesdayOctober 2018Lecture
The seeds of ice in clouds
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Prof. Ben Murray
University of LeedsOrganizer Department of Earth and Planetary SciencesContact
