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October 01, 2018

  • Date:16TuesdayOctober 2018

    Expeditious Synthesis of Bacterial Glycoconjugates

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    Time
    11:00 - 12:00
    Location
    Helen and Milton A. Kimmelman Building
    LecturerProf. Suvarn S. Kulkarni
    Indian Institute of Technology Bombay
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Expeditious Synthesis of Bacterial Glycoconjugates Suvarn ...»
    Expeditious Synthesis of Bacterial Glycoconjugates
    Suvarn S. Kulkarni
    Department of Chemistry, IIT Bombay, Powai, Mumbai-400076
    Bacterial glycoconjugates are comprised of rare D and L deoxy amino sugars, which are not present on the human cell surface. This peculiar structural difference allows discrimination between the pathogen and the host cell and offers avenues for target-specific drug discovery and carbohydrate-based vaccine development. However, they cannot be isolated with sufficient purity in acceptable amounts, and therefore chemical synthesis is a crucial step toward the development of these products.1 We recently established short and convenient methodologies for the synthesis of orthogonally protected bacterial D and L-deoxy amino hexopyranoside and glycosamine building blocks starting from cheaply available D-mannose and L-rhamnose.2-4 The one-pot protocols rely on highly regioselective nucleophilic displacements of triflates. These procedures have been applied to the synthesis of various bacterial glycoconjugates2-8 (Figure 1) as well as metabolic oligosaccharide engineering.7


    1) Emmadi, M.; Kulkarni, S. S. Nat. Prod. Rep. 2014, 31, 870-879. 2) Emmadi, M.; Kulkarni, S. S. Nature Protocols 2013, 8, 1870-1889. 3) Sanapala, S. R.; Kulkarni S. S. J. Am. Chem. Soc. 2016, 138, 4938−4947. 4) Sanapala, S. R.; Kulkarni S. S. Org. Lett. 2016, 18, 3790–3793. 5) Podilapu, A. R.; Kulkarni, S. S. Org. Lett. 2014, 16, 4336-4339. 6) Sanapala, S. R.; Kulkarni, S. S., Chem. Eur. J. 2014, 20, 3578-3583. 7) Clark, E.; I.; Emmadi, M.; Krupp, K. L.; Podilapu, A. R.; Helble, J. D.; Kulkarni, S. S.; Dube, D. H. ACS Chem Biol 2016, 11, 3365-3373. 8) Podilapu, A. R.; Kulkarni, S. S. Org. Lett. 2017, 19, 5466-5469.
    Lecture
  • Date:16TuesdayOctober 2018

    “Beauty and Benefits of cryo-EM; Resolving the 3D structure of the Type VII secretion system in Mycobacterium tuberculosis”

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    Time
    14:00 - 15:00
    Location
    Helen and Milton A. Kimmelman Building
    LecturerProf. Peter Peters
    Maastricht Multimodal Molecular Imaging institute (M4I).
    Organizer
    Department of Chemical and Structural Biology
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    Lecture
  • Date:17WednesdayOctober 2018

    Promoting longevity: targeting aging and age-related diseases

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    Time
    08:00 - 18:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Valery Krizhanovsky
    Conference
  • Date:17WednesdayOctober 2018

    G-INCPM-Special Seminar - Prof. Rony Seger, Department of Biological Regulation, Weizmann Institute - "Targeting the nuclear translocation of MAPKs as a novel anti-inflammatory and anti cancer therapy"

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    Time
    11:00 - 12:15
    Location
    Nancy and Stephen Grand Israel National Center for Personalized Medicine
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about A hallmark of MAPK signaling is their nuclear translocation ...»
    A hallmark of MAPK signaling is their nuclear translocation upon stimulation, which is necessary for their physiological/pathological functions. We have identified two novel, distinct, regulated nuclear translocation mechanisms for ERK1/2 and JNK/p38, of which we made use of as a promising therapeutic approach. We developed a myristoylated, NTS-derived phosphomimetic peptide (EPE peptide), which blocked ERK1/2 nuclear translocation. In culture, the EPE peptide induced apoptosis of melanoma cells, inhibited the proliferation of other cancer cells but had no effect on immortalized cells. Combination of the EPE peptide and the MEK inhibitor had synergistic antitumor activity in mutated NRAS, BRAF and NF1 melanoma and Kras pancreatic cells. In xenograft models, the peptide was significantly more effective than BRAF inhibitors in preventing tumor recurrence of treatment-eradicated melanoma xenografts. We also developed p38-derived myristoylated peptide, termed PERY peptide, which inhibited the importin interaction with JNK1/2 and p38α/β and prevented their nuclear translocation. This peptide affected viability of several breast cancer-derived cell lines, and significantly reduced inflammation and intestinal damage in a mouse model of colitis. Moreover, the peptide inhibited inflammation-induced colorectal cancer in a AOM/DSS mouse model. Taken together, both the cancer and inflammatory models support the use of nuclear translocation of MAPKs as a novel drug target for signaling-related diseases.
    Lecture
  • Date:17WednesdayOctober 2018

    Algebraic Geometry and Representation Theory Seminar

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    Time
    11:15 - 12:30
    Title
    Cyclic Elements in Semisimple Lie Algebras
    Location
    Jacob Ziskind Building
    LecturerProfessor Elashvili
    Razmadze Mathematical Institute
    Organizer
    Faculty of Mathematics and Computer Science , Department of Computer Science and Applied Mathematics , Department of Mathematics
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    Lecture
  • Date:17WednesdayOctober 2018

    Algebraic Geometry and Representation Theory Seminar

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    Time
    11:15 - 12:30
    Title
    Cyclic elements in semisimple Lie algebras
    Location
    Jacob Ziskind Building
    LecturerAlexander Elashvili
    Razmadze Mathematical Institute
    Organizer
    Faculty of Mathematics and Computer Science
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    Lecture
  • Date:17WednesdayOctober 2018

    Algebraic Geometry and Representation Theory Seminar

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    Time
    11:15 - 12:30
    Title
    Cyclic elements in semisimple Lie algebras
    Location
    Jacob Ziskind Building
    LecturerAlexander Elashvili
    Razmadze Mathematical Institute
    Organizer
    Faculty of Mathematics and Computer Science
    Contact
    Lecture
  • Date:17WednesdayOctober 2018

    Machine Learning and Statistics Seminar

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    Time
    11:15 - 12:30
    Title
    Harmonizing Fully Optimal Designs with Classic Randomization in Fixed Trial Experiments
    Organizer
    Faculty of Mathematics and Computer Science
    Contact
    Lecture
  • Date:17WednesdayOctober 2018

    Machine Learning and Statistics Seminar

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    Time
    11:15 - 12:30
    Title
    Harmonizing Fully Optimal Designs with Classic Randomization in Fixed Trial Experiments
    LecturerAdam Kapelner
    Queen's College, NYC
    Organizer
    Faculty of Mathematics and Computer Science
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    Lecture
  • Date:17WednesdayOctober 2018

    Algebraic Geometry and Representation Theory Seminar

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    Time
    11:15 - 12:30
    Title
    Cyclic elements in semisimple Lie algebras
    Location
    Jacob Ziskind Building
    LecturerAlexander Elashvili
    Razmadze Mathematical Institute
    Organizer
    Faculty of Mathematics and Computer Science
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    Lecture
  • Date:18ThursdayOctober 2018

    Information processing at hippocampal synapses

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    Time
    12:30 - 12:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. J. Simon Wiegert,
    Center for Molecular Neurobiology Hamburg (ZMNH) University Medical Center Hamburg-Eppendorf
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Synapses change their strength in response to specific activ...»
    Synapses change their strength in response to specific activity patterns. This functional plasticity is assumed to be the brain’s primary mechanism for information storage. We combine optogenetic and chemogenetic control of synapses in rat hippocampal slice cultures with calcium and glutamate imaging of their spines and boutons. This approach enables us to perform all-optical quantal analysis of synaptic transmission, to induce long-term potentiation (LTP), long-term depression (LTD), or both forms of plasticity in sequence, to chronically manipulate activity and to follow the fate of individual synapses for 7 days. We ask how plasticity and activity are integrated at Schaffer collateral synapses over time. Our findings suggest that activity-dependent changes in the transmission strength of individual synapses are transient, but have long-lasting consequences for synaptic lifetime.
    Lecture
  • Date:21SundayOctober 2018

    Memorial Day for Yitzhak Rabin

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    Time
    11:00 - 12:30
    Contact
    Lecture
  • Date:21SundayOctober 2018

    Major elements in seawater – a tool for quantifying large-scale processes in the ocean

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    Time
    11:00 - 11:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerZvika Steiner
    University of Cambridge
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    Lecture
  • Date:22MondayOctober 2018

    "Composition-Dependent Functions of Biomolecular Condensates"

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    Time
    11:00 - 12:15
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Michael Rosen
    UT Southwestern Medical Center
    Organizer
    Faculty of Chemistry
    Contact
    Colloquia
  • Date:22MondayOctober 2018

    G-INCPM - Special Seminar - Dr. Wolfgang Mann, CEO, BlueCatBio GmbH, Germany - "Blue Washer: the most cost-effective tool to improve data quality (z') for adherent cellular assays"

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    Time
    11:00 - 12:15
    Location
    Nancy and Stephen Grand Israel National Center for Personalized Medicine
    Contact
    AbstractShow full text abstract about Since its introduction in 2015 the BlueWasher has rapidly be...»
    Since its introduction in 2015 the BlueWasher has rapidly become the de-facto standard for media change & cell wash in adherent cellular assays.
    The BlueWasher uses centrifugation instead of aspiration to remove liquids from all plate formats, including 1536w, eliminating background and variability at their (assay) sources. Highly reproducible residual volumes 10x lower than conventional plate washers enable imagers to produce cleaner images, raising z' 0.1-0.3 for typical adherent cellular assays. Higher z' means to miss fewer active compounds and reduce false positives to re-screen. BlueWasher immediately improves screening economics without complex assay or automation changes, delivering unparalleled ROI and direct boost to overall drug discovery productivity.
    A technical introduction into centrifugation based cell wash / media changed will be followed by a number of examples discussing improvement of data quality in HTS / HCS. Other bead based applications like nucleic acids extraction or protein binding assays will be presented as well.

    Lecture
  • Date:22MondayOctober 2018

    Genomic and Epigenomics club

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    Time
    11:00 - 12:00
    Location
    Camelia Botnar Building
    LecturerProf. Eske Willerslev
    Contact
    Lecture
  • Date:22MondayOctober 2018

    Targeting DNA and RNA repeats responsible for neurological disorders by small organic molecules

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    Time
    14:00 - 15:00
    Title
    Special Guest Seminar
    Location
    Max and Lillian Candiotty Building
    LecturerProf. Kazuhiko Nakatani
    Institute of Scientific and Industrial Research, Osaka University, Japan
    Organizer
    Department of Immunology and Regenerative Biology
    Contact
    Lecture
  • Date:22MondayOctober 2018

    Collective formation of territories in scent-marking animal population

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    Time
    14:15 - 14:15
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerLuca Giuggioli
    Luca Giuggioli Bristol University, UK
    Organizer
    Department of Physics of Complex Systems
    Contact
    AbstractShow full text abstract about While a great deal of studies have been devoted to explain t...»
    While a great deal of studies have been devoted to explain the emerging patterns observed in schools of fish and flocks of birds, there exist many other animal collective movement phenomena where alignment does not play a role. One important example is the formation of animal territories, a form a spatial segregation relatively common in mammals. When the mechanism of territorial exclusion occurs via marks deposited on the terrain, one talks about stigmergy, a form of environment-mediated interaction often encountered in social insect societies. To study these stigmergic systems in mammals I have introduced the so-called territorial random walk model consisting of a collection of discrete random walkers that (scent) mark any lattice site they visit. As deposited marks remain active for a finite amount of time, each walker retreats upon encountering an active foreign scent. The emerging spatio-temporal dynamics of the system is analysed both at the meso and micro-scale.
    At the meso-scale the scented territories can be quite rich. Short-lived marks produce rapidly morphing and highly mobile territories, while long-lived marks yield slow territories with a narrowly defined shape distribution. More importantly the full dependence in territory mobility as a function of the time for which individual marks remain active is accompanied by a liquid-hexatic-solid transition akin to the Kosterlitz-Thouless melting scenario, the first ecological model to predict such a transition.
    At the micro-scale, and when population density is sufficiently large, I introduce localized walls to mimic the sharp (retreat) interaction when an animal encounters a foreign scent. A mean-field approximation then allows to represent via a Fokker-Planck formalism an animal roaming within neighbouring territorial boundaries whose movement statistics is subdiffusive and constrained by a spring whose equilibrium length makes the territory size equal to the inverse of the population density. Application of this approximate analytic model to movement data from a red fox population in Bristol, UK, is also shown.
    If time allows, I will mention about an algorithmic implementation in the context of territorial searching robots.
    References
    [1] A. Heiblum-Robles and L. Giuggioli, Phase transitions in stigmergic territorial systems, accepted.
    [2] L. Giuggioli, I. Ayre, A. Heiblum Robles and G.A. Kaminka, From ants to birds: a novel bio-inspired approach to on-line area coverage, in Groß R et al. (eds) Distributed Autonomous Robotic Systems, Springer Proceedings in Advanced Robotics, vol 6, pp. 31-43 (2018).
    [3] L. Giuggioli and V.M. Kenkre, Consequences of animal interactions on their dynamics: emergence of home ranges and territoriality, Move. Ecol. 2(1), 20 (2014).
    [4] L. Giuggioli, J.R. Potts, D.I. Rubenstein and S.A. Levin, Stigmergy, collective actions and animal social spacing, Proc. Natl. Acad. Sci. USA 110(42):16904-9 (2013).
    [5] J.R. Potts, S. Harris and L. Giuggioli, Quantifying behavioral changes in territorial animals caused by sudden population declines, Am. Nat. 182:e73-e82 (2013).
    [6] L. Giuggioli, J.R. Potts and S. Harris, Predicting oscillatory dynamics in the movement of territorial animals, J. Roy. Soc. Interface 9(72):1529-43 (2012).
    [7] J.R. Potts, S. Harris and L. Giuggioli, Territorial dynamics and stable home range formation for central place foragers, PLoS ONE 7(3):e34033 (2012).
    [8] L. Giuggioli, J.R. Potts and S. Harris, Brownian walkers within subdiffusing territorial boundaries, Phys. Rev. E 83:061138/1-11 (2011).
    [9] L. Giuggioli, J.R. Potts and S. Harris, Animal interactions and the emergence of territoriality, PLoS Comp. Biol. 7(3):e10020
    Lecture
  • Date:23TuesdayOctober 201825ThursdayOctober 2018

    Modern teaching methods and soft skills development in science

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    Time
    08:00 - 08:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Ron Blonder
    Conference
  • Date:23TuesdayOctober 2018

    The seeds of ice in clouds

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    Time
    11:00 - 11:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerProf. Ben Murray
    University of Leeds
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    Lecture

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