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אוקטובר 01, 2018

  • Date:16שלישיאוקטובר 2018

    Expeditious Synthesis of Bacterial Glycoconjugates

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    שעה
    11:00 - 12:00
    מיקום
    בניין הלן ומילטון קימלמן
    מרצהProf. Suvarn S. Kulkarni
    Indian Institute of Technology Bombay
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about Expeditious Synthesis of Bacterial Glycoconjugates Suvarn ...»
    Expeditious Synthesis of Bacterial Glycoconjugates
    Suvarn S. Kulkarni
    Department of Chemistry, IIT Bombay, Powai, Mumbai-400076
    Bacterial glycoconjugates are comprised of rare D and L deoxy amino sugars, which are not present on the human cell surface. This peculiar structural difference allows discrimination between the pathogen and the host cell and offers avenues for target-specific drug discovery and carbohydrate-based vaccine development. However, they cannot be isolated with sufficient purity in acceptable amounts, and therefore chemical synthesis is a crucial step toward the development of these products.1 We recently established short and convenient methodologies for the synthesis of orthogonally protected bacterial D and L-deoxy amino hexopyranoside and glycosamine building blocks starting from cheaply available D-mannose and L-rhamnose.2-4 The one-pot protocols rely on highly regioselective nucleophilic displacements of triflates. These procedures have been applied to the synthesis of various bacterial glycoconjugates2-8 (Figure 1) as well as metabolic oligosaccharide engineering.7


    1) Emmadi, M.; Kulkarni, S. S. Nat. Prod. Rep. 2014, 31, 870-879. 2) Emmadi, M.; Kulkarni, S. S. Nature Protocols 2013, 8, 1870-1889. 3) Sanapala, S. R.; Kulkarni S. S. J. Am. Chem. Soc. 2016, 138, 4938−4947. 4) Sanapala, S. R.; Kulkarni S. S. Org. Lett. 2016, 18, 3790–3793. 5) Podilapu, A. R.; Kulkarni, S. S. Org. Lett. 2014, 16, 4336-4339. 6) Sanapala, S. R.; Kulkarni, S. S., Chem. Eur. J. 2014, 20, 3578-3583. 7) Clark, E.; I.; Emmadi, M.; Krupp, K. L.; Podilapu, A. R.; Helble, J. D.; Kulkarni, S. S.; Dube, D. H. ACS Chem Biol 2016, 11, 3365-3373. 8) Podilapu, A. R.; Kulkarni, S. S. Org. Lett. 2017, 19, 5466-5469.
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  • Date:16שלישיאוקטובר 2018

    “Beauty and Benefits of cryo-EM; Resolving the 3D structure of the Type VII secretion system in Mycobacterium tuberculosis”

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    שעה
    14:00 - 15:00
    מיקום
    בניין הלן ומילטון קימלמן
    מרצהProf. Peter Peters
    Maastricht Multimodal Molecular Imaging institute (M4I).
    מארגן
    המחלקה לביולוגיה מבנית וכימית
    צרו קשר
    הרצאה
  • Date:17רביעיאוקטובר 2018

    Promoting longevity: targeting aging and age-related diseases

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    שעה
    08:00 - 18:00
    מיקום
    מרכז כנסים על-שם דויד לופאטי
    יושב ראש
    Valery Krizhanovsky
    כנסים
  • Date:17רביעיאוקטובר 2018

    G-INCPM-Special Seminar - Prof. Rony Seger, Department of Biological Regulation, Weizmann Institute - "Targeting the nuclear translocation of MAPKs as a novel anti-inflammatory and anti cancer therapy"

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    שעה
    11:00 - 12:15
    מיקום
    המרכז הישראלי הלאומי לרפואה מותאמת אישית על-שם ננסי וסטיבן גרנד
    מארגן
    המחלקה למדעים ביומולקולריים
    צרו קשר
    תקצירShow full text abstract about A hallmark of MAPK signaling is their nuclear translocation ...»
    A hallmark of MAPK signaling is their nuclear translocation upon stimulation, which is necessary for their physiological/pathological functions. We have identified two novel, distinct, regulated nuclear translocation mechanisms for ERK1/2 and JNK/p38, of which we made use of as a promising therapeutic approach. We developed a myristoylated, NTS-derived phosphomimetic peptide (EPE peptide), which blocked ERK1/2 nuclear translocation. In culture, the EPE peptide induced apoptosis of melanoma cells, inhibited the proliferation of other cancer cells but had no effect on immortalized cells. Combination of the EPE peptide and the MEK inhibitor had synergistic antitumor activity in mutated NRAS, BRAF and NF1 melanoma and Kras pancreatic cells. In xenograft models, the peptide was significantly more effective than BRAF inhibitors in preventing tumor recurrence of treatment-eradicated melanoma xenografts. We also developed p38-derived myristoylated peptide, termed PERY peptide, which inhibited the importin interaction with JNK1/2 and p38α/β and prevented their nuclear translocation. This peptide affected viability of several breast cancer-derived cell lines, and significantly reduced inflammation and intestinal damage in a mouse model of colitis. Moreover, the peptide inhibited inflammation-induced colorectal cancer in a AOM/DSS mouse model. Taken together, both the cancer and inflammatory models support the use of nuclear translocation of MAPKs as a novel drug target for signaling-related diseases.
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  • Date:17רביעיאוקטובר 2018

    Algebraic Geometry and Representation Theory Seminar

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    שעה
    11:15 - 12:30
    כותרת
    Cyclic Elements in Semisimple Lie Algebras
    מיקום
    בניין יעקב זיסקינד
    מרצהProfessor Elashvili
    Razmadze Mathematical Institute
    מארגן
    הפקולטה למתמטיקה ומדעי המחשב , המחלקה למדעי המחשב ומתמטיקה שימושית , המחלקה למתמטיקה
    צרו קשר
    הרצאה
  • Date:17רביעיאוקטובר 2018

    Algebraic Geometry and Representation Theory Seminar

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    שעה
    11:15 - 12:30
    כותרת
    Cyclic elements in semisimple Lie algebras
    מיקום
    בניין יעקב זיסקינד
    מרצהAlexander Elashvili
    Razmadze Mathematical Institute
    מארגן
    הפקולטה למתמטיקה ומדעי המחשב
    צרו קשר
    הרצאה
  • Date:17רביעיאוקטובר 2018

    Algebraic Geometry and Representation Theory Seminar

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    שעה
    11:15 - 12:30
    כותרת
    Cyclic elements in semisimple Lie algebras
    מיקום
    בניין יעקב זיסקינד
    מרצהAlexander Elashvili
    Razmadze Mathematical Institute
    מארגן
    הפקולטה למתמטיקה ומדעי המחשב
    צרו קשר
    הרצאה
  • Date:17רביעיאוקטובר 2018

    Machine Learning and Statistics Seminar

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    שעה
    11:15 - 12:30
    כותרת
    Harmonizing Fully Optimal Designs with Classic Randomization in Fixed Trial Experiments
    מארגן
    הפקולטה למתמטיקה ומדעי המחשב
    צרו קשר
    הרצאה
  • Date:17רביעיאוקטובר 2018

    Machine Learning and Statistics Seminar

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    שעה
    11:15 - 12:30
    כותרת
    Harmonizing Fully Optimal Designs with Classic Randomization in Fixed Trial Experiments
    מרצהAdam Kapelner
    Queen's College, NYC
    מארגן
    הפקולטה למתמטיקה ומדעי המחשב
    צרו קשר
    הרצאה
  • Date:17רביעיאוקטובר 2018

    Algebraic Geometry and Representation Theory Seminar

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    שעה
    11:15 - 12:30
    כותרת
    Cyclic elements in semisimple Lie algebras
    מיקום
    בניין יעקב זיסקינד
    מרצהAlexander Elashvili
    Razmadze Mathematical Institute
    מארגן
    הפקולטה למתמטיקה ומדעי המחשב
    צרו קשר
    הרצאה
  • Date:18חמישיאוקטובר 2018

    Information processing at hippocampal synapses

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    שעה
    12:30 - 12:30
    מיקום
    אולם הרצאות ע"ש גרהרד שמידט
    מרצהProf. J. Simon Wiegert,
    Center for Molecular Neurobiology Hamburg (ZMNH) University Medical Center Hamburg-Eppendorf
    מארגן
    המחלקה למדעי המוח
    צרו קשר
    תקצירShow full text abstract about Synapses change their strength in response to specific activ...»
    Synapses change their strength in response to specific activity patterns. This functional plasticity is assumed to be the brain’s primary mechanism for information storage. We combine optogenetic and chemogenetic control of synapses in rat hippocampal slice cultures with calcium and glutamate imaging of their spines and boutons. This approach enables us to perform all-optical quantal analysis of synaptic transmission, to induce long-term potentiation (LTP), long-term depression (LTD), or both forms of plasticity in sequence, to chronically manipulate activity and to follow the fate of individual synapses for 7 days. We ask how plasticity and activity are integrated at Schaffer collateral synapses over time. Our findings suggest that activity-dependent changes in the transmission strength of individual synapses are transient, but have long-lasting consequences for synaptic lifetime.
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  • Date:21ראשוןאוקטובר 2018

    Memorial Day for Yitzhak Rabin

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    שעה
    11:00 - 12:30
    צרו קשר
    הרצאה
  • Date:21ראשוןאוקטובר 2018

    Major elements in seawater – a tool for quantifying large-scale processes in the ocean

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    שעה
    11:00 - 11:00
    מיקום
    בניין משפחת זוסמן
    מרצהZvika Steiner
    University of Cambridge
    מארגן
    המחלקה למדעי כדור הארץ וכוכבי הלכת
    צרו קשר
    הרצאה
  • Date:22שניאוקטובר 2018

    "Composition-Dependent Functions of Biomolecular Condensates"

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    שעה
    11:00 - 12:15
    מיקום
    אולם הרצאות ע"ש גרהרד שמידט
    מרצהProf. Michael Rosen
    UT Southwestern Medical Center
    מארגן
    הפקולטה לכימיה
    צרו קשר
    סימפוזיונים
  • Date:22שניאוקטובר 2018

    G-INCPM - Special Seminar - Dr. Wolfgang Mann, CEO, BlueCatBio GmbH, Germany - "Blue Washer: the most cost-effective tool to improve data quality (z') for adherent cellular assays"

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    שעה
    11:00 - 12:15
    מיקום
    המרכז הישראלי הלאומי לרפואה מותאמת אישית על-שם ננסי וסטיבן גרנד
    צרו קשר
    תקצירShow full text abstract about Since its introduction in 2015 the BlueWasher has rapidly be...»
    Since its introduction in 2015 the BlueWasher has rapidly become the de-facto standard for media change & cell wash in adherent cellular assays.
    The BlueWasher uses centrifugation instead of aspiration to remove liquids from all plate formats, including 1536w, eliminating background and variability at their (assay) sources. Highly reproducible residual volumes 10x lower than conventional plate washers enable imagers to produce cleaner images, raising z' 0.1-0.3 for typical adherent cellular assays. Higher z' means to miss fewer active compounds and reduce false positives to re-screen. BlueWasher immediately improves screening economics without complex assay or automation changes, delivering unparalleled ROI and direct boost to overall drug discovery productivity.
    A technical introduction into centrifugation based cell wash / media changed will be followed by a number of examples discussing improvement of data quality in HTS / HCS. Other bead based applications like nucleic acids extraction or protein binding assays will be presented as well.

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  • Date:22שניאוקטובר 2018

    Genomic and Epigenomics club

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    שעה
    11:00 - 12:00
    מיקום
    בניין קמיליה בוטנאר
    מרצהProf. Eske Willerslev
    צרו קשר
    הרצאה
  • Date:22שניאוקטובר 2018

    Targeting DNA and RNA repeats responsible for neurological disorders by small organic molecules

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    שעה
    14:00 - 15:00
    כותרת
    Special Guest Seminar
    מיקום
    בניין ע"ש מקס ולילאן קנדיוטי
    מרצהProf. Kazuhiko Nakatani
    Institute of Scientific and Industrial Research, Osaka University, Japan
    מארגן
    המחלקה לאימונולוגיה ורגנרציה ביולוגית
    צרו קשר
    הרצאה
  • Date:22שניאוקטובר 2018

    Collective formation of territories in scent-marking animal population

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    שעה
    14:15 - 14:15
    מיקום
    בניין הפיזיקה ע"ש עדנה וק.ב. וייסמן
    מרצהLuca Giuggioli
    Luca Giuggioli Bristol University, UK
    מארגן
    המחלקה לפיזיקה של מערכות מורכבות
    צרו קשר
    תקצירShow full text abstract about While a great deal of studies have been devoted to explain t...»
    While a great deal of studies have been devoted to explain the emerging patterns observed in schools of fish and flocks of birds, there exist many other animal collective movement phenomena where alignment does not play a role. One important example is the formation of animal territories, a form a spatial segregation relatively common in mammals. When the mechanism of territorial exclusion occurs via marks deposited on the terrain, one talks about stigmergy, a form of environment-mediated interaction often encountered in social insect societies. To study these stigmergic systems in mammals I have introduced the so-called territorial random walk model consisting of a collection of discrete random walkers that (scent) mark any lattice site they visit. As deposited marks remain active for a finite amount of time, each walker retreats upon encountering an active foreign scent. The emerging spatio-temporal dynamics of the system is analysed both at the meso and micro-scale.
    At the meso-scale the scented territories can be quite rich. Short-lived marks produce rapidly morphing and highly mobile territories, while long-lived marks yield slow territories with a narrowly defined shape distribution. More importantly the full dependence in territory mobility as a function of the time for which individual marks remain active is accompanied by a liquid-hexatic-solid transition akin to the Kosterlitz-Thouless melting scenario, the first ecological model to predict such a transition.
    At the micro-scale, and when population density is sufficiently large, I introduce localized walls to mimic the sharp (retreat) interaction when an animal encounters a foreign scent. A mean-field approximation then allows to represent via a Fokker-Planck formalism an animal roaming within neighbouring territorial boundaries whose movement statistics is subdiffusive and constrained by a spring whose equilibrium length makes the territory size equal to the inverse of the population density. Application of this approximate analytic model to movement data from a red fox population in Bristol, UK, is also shown.
    If time allows, I will mention about an algorithmic implementation in the context of territorial searching robots.
    References
    [1] A. Heiblum-Robles and L. Giuggioli, Phase transitions in stigmergic territorial systems, accepted.
    [2] L. Giuggioli, I. Ayre, A. Heiblum Robles and G.A. Kaminka, From ants to birds: a novel bio-inspired approach to on-line area coverage, in Groß R et al. (eds) Distributed Autonomous Robotic Systems, Springer Proceedings in Advanced Robotics, vol 6, pp. 31-43 (2018).
    [3] L. Giuggioli and V.M. Kenkre, Consequences of animal interactions on their dynamics: emergence of home ranges and territoriality, Move. Ecol. 2(1), 20 (2014).
    [4] L. Giuggioli, J.R. Potts, D.I. Rubenstein and S.A. Levin, Stigmergy, collective actions and animal social spacing, Proc. Natl. Acad. Sci. USA 110(42):16904-9 (2013).
    [5] J.R. Potts, S. Harris and L. Giuggioli, Quantifying behavioral changes in territorial animals caused by sudden population declines, Am. Nat. 182:e73-e82 (2013).
    [6] L. Giuggioli, J.R. Potts and S. Harris, Predicting oscillatory dynamics in the movement of territorial animals, J. Roy. Soc. Interface 9(72):1529-43 (2012).
    [7] J.R. Potts, S. Harris and L. Giuggioli, Territorial dynamics and stable home range formation for central place foragers, PLoS ONE 7(3):e34033 (2012).
    [8] L. Giuggioli, J.R. Potts and S. Harris, Brownian walkers within subdiffusing territorial boundaries, Phys. Rev. E 83:061138/1-11 (2011).
    [9] L. Giuggioli, J.R. Potts and S. Harris, Animal interactions and the emergence of territoriality, PLoS Comp. Biol. 7(3):e10020
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  • Date:23שלישיאוקטובר 201825חמישיאוקטובר 2018

    Modern teaching methods and soft skills development in science

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    שעה
    08:00 - 08:00
    מיקום
    מרכז כנסים על-שם דויד לופאטי
    יושב ראש
    Ron Blonder
    כנסים
  • Date:23שלישיאוקטובר 2018

    The seeds of ice in clouds

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    שעה
    11:00 - 11:00
    מיקום
    בניין משפחת זוסמן
    מרצהProf. Ben Murray
    University of Leeds
    מארגן
    המחלקה למדעי כדור הארץ וכוכבי הלכת
    צרו קשר
    הרצאה

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