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June 06, 2016
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Date:05TuesdayFebruary 2019Lecture
δ26Mg values of low-T hydrothermal fluids exert new constraints on the oceanic Mg budget and require significant dolomite formation
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Netta Shalev
ETH ZurichOrganizer Department of Earth and Planetary SciencesContact -
Date:05TuesdayFebruary 2019Lecture
Sequencing giants - the wild emmer wheat genome assembly
More information Time 11:30 - 11:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Raz Avni
The Institute for Cereal Crops Improvement, Tel-Aviv UniversityOrganizer Department of Plant and Environmental SciencesContact -
Date:05TuesdayFebruary 2019Lecture
The molecular mechanism of Respiratory Syncytial virus assembly
More information Time 14:00 - 15:00Location Helen and Milton A. Kimmelman BuildingLecturer Dr. Monika Bajorek
from INRA, FranceOrganizer Department of Chemical and Structural BiologyContact -
Date:05TuesdayFebruary 2019Lecture
Time-resolved neural activity and plasticity in behaving rodents using high field MRI
More information Time 14:00 - 14:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dr. Noam Shemesh
Champalimaud Centre for the Unknown, Lisbon, PortugalOrganizer Department of Brain SciencesContact -
Date:06WednesdayFebruary 2019Lecture
Developmental Club Series 2018-2019
More information Time 10:00 - 10:00Title Adhesion mediated neuron-neuron communication instructs neuronal circuit remodelingLocation Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Oren Schuldiner Organizer Department of Molecular GeneticsContact -
Date:06WednesdayFebruary 2019Lecture
Field and Laboratory Studies of Ice Nucleation by Organic Aerosols: Insights on Phase Transitions and Glass Formation
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Prof. Daniel Cziczo
Earth, Atmospheric and Planetary Sciences Civil and Environmental Engineering Massachusetts Institute of TechnologyOrganizer Department of Earth and Planetary SciencesContact -
Date:06WednesdayFebruary 2019Lecture
Extension of in-situ nanoindentation results by (S)TEM graphical data processing
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Dr. Vasily A. Lebedev
Lomonosov Moscow State University, MoscowOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Nanomechanical measurements allow us to determine mechanic...»
Nanomechanical measurements allow us to determine mechanical characteristics of nano- and microobjects, which is required for further calculations of the mechanical parameters of the structures based on them. At the same time, in-situ measurements are carried out in the SEM and TEM chambers. Thus, it is possible to acquire graphic information that can supplement the indentation data.
In this work, indentation of titania microspheres with different phase composition was tested by MEMS-based Hysitron PI-95 at Zeiss Libra 200MC TEM. Evaluation of the mechanical properties of microspheres in the elastic region was made according to the Hertz model. It turned out that annealing of the amorphous titania leads to an increase in the Young modulus, whereas the hydrothermal treatment reduces it from 27 to 4 Gpa. The differences in the destruction process was demonstrated for these kinds of particles. It has been shown, that hydrothermal treatment of titania microspheres leads to the formation of a reticular internal structure, whereas annealing results in sintering of the internal structure of microspheres.
In the process of indentation, corresponding videos were also recorded, including the probe approach, indentation, and destruction of the microspheres. In order to process the videos we coded the program based on free Python packages. Using the Digital Image Correlation (DIC) algorithm, relative probe displacements were measured during indentation (Fig. 1a). The results obtained allowed us to clarify the calibration of the movement of the indenter in free sample tests, as well as to determine the drift function in real measurements. These results are important for long-term measurements, in particular creep tests.
Based on graphical data we were able to determine the evolution of the shape of indented microspheres. During the video processing, areas of individual objects were determined, sizes of contact areas were calculated, and changes in linear dimensions of the deformed objects were determined (Fig. 1b). Therefore, a large amount of quantitative data was obtained from electron microscopy images.
Fig.1 Illustration of probe displacement determination (a) and the shape evolution analysis
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Date:07ThursdayFebruary 2019Lecture
“Chemical probes for novel biology” The HTS unit and two stories of methyltransferase inhibitors
More information Time 09:00 - 10:00Location Max and Lillian Candiotty BuildingLecturer Dr. Haim Barr
High Throughput Screening Unit G-INCPMOrganizer Department of Life Sciences Core FacilitiesContact -
Date:07ThursdayFebruary 2019Lecture
Towards plug and play parallel transmission for 7T human brain MRI with universal pulses
More information Time 10:00 - 11:00Location Perlman Chemical Sciences BuildingLecturer Dr. Nicolas Boulant
NeuroSpin, CEA-Saclay, Université Paris-SaclayOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Parallel transmission has been the most promising approach t...» Parallel transmission has been the most promising approach to counteract the radiofrequency (RF) field inhomogeneity problem in MRI at ultra-high field. Despite tremendous progress made by the community for more than a decade, the technology yet has failed to be embraced in routine practice because of a more complex safety management and a cumbersome calibration procedure for each subject in the scanner. After thorough tests and validations to address the former point, universal pulses were proposed a couple of years ago to circumvent the workflow problem in head imaging at 7T. For a given RF coil, they consist of designing, offline, pulse solutions to mitigate the RF field inhomogeneity problem while being robust to intersubject variability, all within explicit hardware and safety constraints. This talk will present the latest sequence and pulse developments incorporating these solutions, now covering 3D (GRE, MPRAGE, TSE, MP-FLAIR, DIR, 3D-EPI) and 2D (GRE, MB-EPI) sequences with first routine results for fMRI (resting-state HCP-style, localizer paradigm) and ongoing clinical studies (Multiple Sclerosis), thereby making parallel transmission one step closer to clinical routine and at zero cost for the user. Perhaps interestingly, to reach the desired versatility and simplicity, some solutions were inspired from solid-state NMR methods. To date the proposed universal pulses cumulate tests on around 50 volunteers and across 4 sites. They have never failed to return brain images virtually free of B1+ artefacts at 7T. -
Date:07ThursdayFebruary 2019Lecture
Chemical and Biological Physics Guest Seminar
More information Time 11:00 - 11:00Title Interactions of hydrophobic nanoparticles with biological membraneLocation Perlman Chemical Sciences BuildingLecturer Prof. Matej Daniel
Czech Technical University, PragueOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about Small hydrophobic gold nanoparticles with a diameter lower t...» Small hydrophobic gold nanoparticles with a diameter lower than the membrane thickness can form clusters or uniformly distribute within the hydrophobic core of the bilayer. The coexistence of two stable phases (clustered and dispersed) indicates the energy barrier between nanoparticles. It could be shown, that the forces between the nanoparticles embedded in the biological membrane could be either attractive or repulsive, depending on the mutual distance between them. -
Date:07ThursdayFebruary 2019Colloquia
The Biomass Distribution on Earth
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Prof. Ron Milo
Department of Plant and Environmental Sciences Weizmann Institute of ScienceOrganizer Faculty of PhysicsContact Abstract Show full text abstract about A census of the biomass on Earth is key for understanding th...» A census of the biomass on Earth is key for understanding the structure and dynamics of the biosphere. Yet, a quantitative, global view of how the biomass of different taxa compare with each other is still lacking. In this study, we harness recent advances in global sampling techniques to assemble the overall biomass composition of the biosphere, establishing the first census of the biomass of all the kingdoms of life.
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Date:07ThursdayFebruary 2019Lecture
Vision and Robotics Seminar
More information Time 12:15 - 13:30Title Using visual and auditory cues for audio enhancementLocation Jacob Ziskind BuildingLecturer Tavi Halperin
The Hebrew University of JerusalemOrganizer Faculty of Mathematics and Computer Science , Department of Computer Science and Applied Mathematics , Department of MathematicsContact -
Date:07ThursdayFebruary 2019Lecture
Frustrations in the treatment of Ovarian Cancer
More information Time 14:00 - 15:00Title Special Guest SeminarLocation Max and Lillian Candiotty BuildingLecturer Prof. Uziel Beller
Shaare Zedek Medical Center Jerusalem & Assuata AshdodOrganizer Department of Immunology and Regenerative BiologyContact -
Date:07ThursdayFebruary 2019Lecture
Pelletron meeting - by invitation only
More information Time 16:00 - 17:45Contact -
Date:10SundayFebruary 2019Lecture
Chemical and Biological Physics Guest Seminar
More information Time 09:30 - 09:30Title Computational Modeling of Large Biomolecular Systems: Methodology and a Case Study of the Smartest Molecule (an NMDA Receptor in the Brain)Location Perlman Chemical Sciences BuildingLecturer Dr. Anton V. Sinitskiy
Stanford UniversityOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about In this talk targeted at a wide audience of chemists, I will...» In this talk targeted at a wide audience of chemists, I will start with a story about the ‘smartest’ molecule. Neuronal NMDA receptors, in my opinion, deserve this name, because they play the key role in the molecular mechanisms of learning, memory formation, and abstract reasoning. Also, malfunctioning NMDA receptors are involved in numerous neurological disorders, including schizophrenia, epilepsy, and Alzheimer’s disease. NMDA receptors are complicated and rich in behavior, and even the most
up-to-date experimental methods yield only a fragmented picture of these biomolecules. How do their known structures relate to their biologically relevant functional states? Through what mechanisms do post-translational modifications (specifically, glycosylation) affect their physiological properties? Computational modeling offers unique insights into these questions, and I will outline my work in this field. Simulating NMDA receptors is a formidable task, though. In the second half of my talk, I will discuss how advances in methodology could facilitate studies of such large molecular and biomolecular systems. Specifically, I will focus on the concepts of coarse-graining, Markov state modeling, and mixed-resolution hybrid modeling, highlighting my work in this field [including ultra-coarse-grained modeling, and quantum mechanics / coarse-grained molecular mechanics (QM/CG-MM) approach]. Finally, I will briefly touch on the possible use of machine learning and deep learning networks in molecular modeling. In general, further advances in the theory and methodology of modeling will result in new opportunities for studying complex phenomena, such as learning and memory, with unprecedented resolution.
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Date:10SundayFebruary 2019Lecture
Uncertainty in aquatic ecosystems: living with it, managing with it…
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Gideon Gal
Kinneret Limnological Laboratory, (KLL)Organizer Department of Earth and Planetary SciencesContact -
Date:10SundayFebruary 2019Lecture
Self-assemblies of designed B-sheet peptides as hydrogels, coatings and drug delivery nanoparticles
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Hanna Rapaport
Department of Biotechnology Engineering and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the NegevOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Peptides in -sheet conformations have been developed in our...» Peptides in -sheet conformations have been developed in our lab in a bottom up fashion towards various biomedical applications. Hydrogels of -sheet peptides will be briefly introduced and the talk will then focus on peptide coatings for induced osseointegration of titanium implants and peptides enhanced nanoparticles for intracellularly targeted drug delivery. -
Date:10SundayFebruary 2019Lecture
Recovering exact conditions at semi-local DFT cost to mitigate energy and density errors for transition metal chemistry
More information Time 14:00 - 15:00Location Perlman Chemical Sciences BuildingLecturer Prof. Heather Kulik
Dept. Chemical Engineering, MITOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Accurate prediction of electronic properties of open-shell t...» Accurate prediction of electronic properties of open-shell transition metal complexes is essential for materials design and catalysis. Nevertheless, the properties that make these materials and molecules so compelling also make them extremely challenging to study accurately with any computational model. Although density functional theory (DFT) remains the method of choice for its balance of speed and accuracy in computational screening, semi-local approximations in density functional theory (DFT), such as the generalized gradient approximation (GGA), suffer from many electron self-interaction errors that causes them to predict erroneous spin states and geometries, barrier heights and dissociation energies, and orbital energies, to name a few. I will outline our recent efforts to both understand and correct these errors with a focus on predictive modeling of transition metal chemistry : i) We describe how common approximations to recover the derivative discontinuity (i.e., DFT+U and global or range separated hybrids) affect the density properties of transition metal complexes and correlated solids with respect to exact references, ii) We demonstrate recovery of the flat-plane condition that is a union of the requirement of piecewise linearity with electron removal or addition as well as unchanged energy when changing the spin of an electron in isoenergetic orbitals. We accomplish this at no computational cost over semi-local DFT by building from scratch our judiciously-modified DFT (jmDFT) functionals designed to oppose errors inherent in semi-local functionals. We show the connection to but divergence of these functional forms from hybrid expressions and standard DFT+U explain why both common approximations increase static correlation errors. We also present fundamental expressions for determining these parameters, mitigating any empiricism in the method. iii) Finally, time permitting, I will describe our efforts to overcome DFT inaccuracies through the development of data-driven structure-method relationships, including in artificial neural networks that can predict sensitivity of spin-state ordering in transition metal complexes to changes in the exchange-correlation functional.
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Date:11MondayFebruary 2019Colloquia
"Bio-organic systems for Electrocatalytic CO2 recycling"
More information Time 11:00 - 12:15Location Perlman Chemical Sciences BuildingLecturer Prof. Serdar Sariciftci
Linz-Organic Photovoltaic Cells institute in thy Johannes Kepler University of LinzOrganizer Faculty of ChemistryContact -
Date:11MondayFebruary 2019Lecture
Chemical tools for manipulating the topology of polymer networks
More information Time 11:00 - 12:00Location Helen and Milton A. Kimmelman BuildingLecturer Prof. Jeremiah A. Johnson
Department of Chemistry, Massachusetts Institute of TechnologyOrganizer Department of Molecular Chemistry and Materials ScienceContact
