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April 27, 2017

  • Date:30WednesdayOctober 2019

    Seminar for thesis defense Naama Dekel

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    Time
    13:00 - 14:00
    Title
    System level study of the cell death functional signature in metastatic melanoma cell lines
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerNaama Dekel
    Organizer
    Department of Molecular Genetics
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    Lecture
  • Date:31ThursdayOctober 2019

    Mini-Symposium on Demystifying machine learning for microscopy

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    Time
    08:00 - 08:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Ofra Golani
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  • Date:31ThursdayOctober 2019

    Characterization of Biomolecule and Structure Changes using Polarization Transfer from Hyperpolarized Water

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    Time
    09:30 - 10:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerDr. Jihyun Kim
    Department of Chemistry ,Texas A&M University
    Organizer
    Department of Molecular Chemistry and Materials Science
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    AbstractShow full text abstract about Nuclear magnetic resonance (NMR) spectroscopy is a powerful ...»
    Nuclear magnetic resonance (NMR) spectroscopy is a powerful analytical tool for the characterization of protein structure and intermolecular interactions. However, NMR is not readily applicable to determine fast structural changes and weak interactions between molecules because of low signal sensitivity and time requirements to record multi-dimensional NMR spectra. To overcome these limits, the hyperpolarization technique of dissolution dynamic nuclear polarization (D-DNP) is combined with NMR. Not all molecules can be directly hyperpolarized. Instead, polarization transfer from hyperpolarized small molecules to a target of interest can be utilized as a means of obtaining polarization, as well as for detecting intermolecular interactions between these molecules Here, hyperpolarized water-assisted NMR spectroscopy was developed to measure intermolecular interactions with water. Firstly, the use of DNP hyperpolarization was demonstrated for the accurate determination of intermolecular cross-relaxation rates between hyperpolarized water and fluorinated target molecules.[1]
    Because hyperpolarized water acts as a source spin with a large deviation of the population from the equilibrium, the 19F signal on the target molecules is enhanced through NOE, allowing obtain an entire NOE buildup curve in a single, rapid measurement. When the hyperpolarized water-assisted NMR experiment is applied to a protein, water hyperpolarization can be transferred to amide protons on the protein through proton exchange. Further, this polarization spreads within the protein through intramolecular NOE to nearby protons including aliphatic groups.[2] By utilizing this polarization transfer, this method extends to measure enhanced 2D NMR spectra of the protein under folded and refolding conditions.[3] With the ability to rapidly measure protein signals that were enhanced through transferred polarization from hyperpolarized water, NMR spectra can be acquired within the timescale of the protein folding. Compared to the folded protein experiment, signals attributed to exchange-relayed NOEs are not observable in the refolding experiment (Figure 1b). These differences are explained by the absence of long-range contacts with nearby exchangeable protons such as OH protons
    Lecture
  • Date:31ThursdayOctober 2019

    The Barry Sherman Medicinal Chemistry and Chemical Biology Seminar Series Transnational Cancer Research

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    Time
    14:00 - 15:00
    Title
    Converging Cancer Genetics, Structural Biology and Medicinal Chemistry
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Daniel Rauh
    Faculty of Chemistry and Chemical Biology, TU Dortmund University, Germany
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    Lecture
  • Date:03SundayNovember 201907ThursdayNovember 2019

    SAAC meeting 2019

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    Time
    All day
    Location
    The David Lopatie Conference Centre
    Contact
    International Board
  • Date:03SundayNovember 2019

    Pre-SAAC symposium on Systems Biology

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    Time
    09:00 - 14:30
    Location
    The David Lopatie Conference Centre
    Chairperson
    Uri Alon
    Conference
  • Date:03SundayNovember 2019

    Pre-SAAC symposium on: New perspectives in modern mathematics

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    Time
    09:30 - 17:00
    Location
    Jacob Ziskind Building
    Organizer
    Department of Mathematics
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    Lecture
  • Date:03SundayNovember 2019

    Annual Zuckerman Symposium

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    Time
    10:00 - 14:00
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
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    Lecture
  • Date:03SundayNovember 2019

    Ocean Worlds of the Outer Solar System: Life as we know it or life as we don’t?

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    Time
    11:00 - 11:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerAlex Hayes
    Associate Professor, Director, Cornell Center for Astrophysics and Planetarty Science, Director of the Spacecraft Planetary Image Facility
    Organizer
    Department of Earth and Planetary Sciences
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    AbstractShow full text abstract about Recent discoveries have shown that habitable environments li...»
    Recent discoveries have shown that habitable environments likely exist in subsurface water oceans within the outer planet moons of Europa and Enceladus. On Titan, the largest moon of Saturn, lakes and seas of liquid hydrocarbon exist in addition to a vast subsurface water ocean. These places represent ideal locations for hydrothermal environments that could sustain life as we know it and, in Titan’s case, perhaps even life as we don’t. The next generation of uncrewed planetary spacecraft will be designed to search for the signs of life in one or more of these worlds. This lecture will begin with a brief review of the discoveries that have motivated a renewed importance for Ocean World exploration, before diving into Titan's lakes and seas to discuss recent findings related to its hydrocarbon-based hydrologic cycle and setting the stage for the newly selected Dragonfly quadcopter set to explore Titan in the mid 2030s.
    Lecture
  • Date:03SundayNovember 2019

    Transmission Electron Microscopy in Motion

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    Time
    11:00 - 12:00
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Frances M. Ross
    Department of Materials Science and Engineering, MIT
    Organizer
    Department of Molecular Chemistry and Materials Science
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    AbstractShow full text abstract about We can watch crystals grow in the electron microscope by add...»
    We can watch crystals grow in the electron microscope by adding atoms one at a time onto a clean surface. The movies tell us about kinetics and thermodynamics but can also be entertaining, frustrating, or both at the same time. I will attempt to share the joy of this type of “in situ” microscopy as we aim to understand how atoms assemble into nanowires or nanocrystals and use the information to control the formation of more complicated nanostructures with new properties
    Lecture
  • Date:05TuesdayNovember 2019

    Stress-induced psychiatric disorders: A symphony of molecular and cellular mechanisms

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    Time
    10:00 - 11:00
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerProf. Alon Chen
    Department of Neurobiology - WIS
    Organizer
    Department of Biomolecular Sciences
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    AbstractShow full text abstract about The biological response to stress is concerned with the main...»
    The biological response to stress is concerned with the maintenance of homeostasis in the presence of real or perceived challenges. This process requires numerous adaptive responses, involving changes in the central nervous and neuroendocrine systems. When a situation is perceived as stressful, the brain activates many neuronal mechanisms and circuits, linking centers involved in sensory, motor, autonomic, neuroendocrine, cognitive, and emotional functions in order to adapt to the demand. However, the details of the pathways by which the brain translates stressful stimuli into the final, integrated biological response are not completely understood. Nevertheless, it is clear that dysregulation of these physiological responses to stress can have severe psychological and physiological consequences, and there is substantial evidence to suggest that inappropriate regulation, disproportional intensity, or chronic and/or irreversible activation of the stress response is linked to the etiology and pathophysiology of anxiety, depression and metabolic-related disorders. The lecture will review our recent knowledge and findings of stress response neurobiology and stress-induced psychiatric disorders.
    Lecture
  • Date:05TuesdayNovember 2019

    Microbial community maintenance of plant growth: bridging the gap between ecology and mechanism

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    Time
    11:30 - 12:30
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerDr. Omri Finkel
    Grant-Dangl Lab, Biology Department, University of North Carolina-Chapel Hill, USA
    Organizer
    Department of Plant and Environmental Sciences
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    Lecture
  • Date:05TuesdayNovember 2019

    Collective Conflict Resolution in Groups on the Move

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    Time
    12:30 - 12:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Nir Gov
    Dept of Chemical and Biological Physics Faculty of Chemistry, WIS
    Organizer
    Department of Brain Sciences
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    AbstractShow full text abstract about Collective decision-making regarding direction of travel is ...»
    Collective decision-making regarding direction of travel is observed during natural motion of animal and cellular groups. This phenomenon is exemplified, in the simplest case, by a group that contains two informed subgroups that hold conflicting preferred directions of motion. Under such circumstances, simulations, subsequently supported by experimental data with birds and primates, have demonstrated that the resulting motion is either towards a compromise direction or towards one of the preferred targets (even when the two subgroups are equal in size). However, the nature of this transition is not well understood. We present a theoretical study that combines simulations and a spin model for mobile animal groups. This allows us to identify the nature of this transition at a critical angular difference between the two preferred directions: in both flocking and spin models the transition coincides with the change in the group dynamics from Brownian to persistent collective motion. The groups undergo this transition as the number of uninformed individuals (those in the group that do not exhibit a directional preference) increases, which acts as an inverse of the temperature (noise) of the spin model. When the two informed subgroups are not equal in size, there is a tendency for the group to reach the target preferred by the larger subgroup. We find that the spin model captures effectively the essence of the collective decision-making transition and allows us to reveal a noise-dependent trade-off between the decision-making speed and the ability to achieve majority (democratic) consensus.
    Lecture
  • Date:05TuesdayNovember 2019

    Cooperative folding of polyglutamine helices in transcriptional regulators

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    Time
    14:00 - 14:00
    Location
    Helen and Milton A. Kimmelman Building
    LecturerDr. Xavier Salvatella
    Organizer
    Department of Chemical and Structural Biology
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    Lecture
  • Date:06WednesdayNovember 2019

    Life Science Colloquium- Prof Feng Zhang

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    Time
    11:00 - 12:00
    Title
    Exploration of Microbial Diversity for Genome Editing and Beyond
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerTBD
    Contact
    Lecture
  • Date:06WednesdayNovember 2019

    Boron subphthalocyanines and subnaphthalocyanines for organic photovoltaics

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    Time
    11:00 - 12:00
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Tim Bender
    Department of Chemical Engineering and Applied Chemistry University of Toronto
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about For some time, our group has been focused on the design, syn...»
    For some time, our group has been focused on the design, synthesis and application of derivatives of boron subphthalocyanines (BsubPcs), a macrocyclic molecule with chelated central boron atom. Our focal point has been and continues to be equally balanced between the basic and applied chemistry of BsubPcs, their application as light absorbing and electronic conducting materials in organic photovoltaics (OPVs)/solar cells.
    For this presentation I will outline how we have developed BsubPcs for their application in OPVs and other organic electronic devices. For OPVs, we have developed an approach to their development whereby their basic and applied chemistry is justified by a development cycle which includes their physical chemistry and characterization, their immediate integration into OPVs and based on their indoor stability are placed in the ambient environment to truly address their ultimate application in organic solar cells. Integrated into this cycle is a computational modeling methodology that is used to screen potential BsubPcs for their application in organic electronic devices including OPVs/organic solar cells. Most recently we have identified a pathway to BsubPcs whereby all carbons are bio-sourced and I will highlight how the computational model justified the time and resource commitment to their synthesis and development.
    In addition to BsubPcs, we have taken an equal approach to extended -conjugated derivatives of BsubPcs, boron subnaphthalocyanines (BsubNcs); BsubNcs being unique and beneficial materials for OPV application. We have shown that BsubNcs actually become randomly chlorinated during their synthetic preparation and actually then form a mixed alloy composition of chlorinated materials, which we have designated as Cl-ClnBsubNcs. The mixed alloy composition is unique, and has been determined to be a mixture of 24 (more or less) chlorinated BsubNcs despite being a mixture that uniquely forms single crystals. The formation of single crystals is enabled by the chlorine atoms occupying vacancies within the solid state structure, the vacancies being the so-called “bay position” of the BsubNcs structure. During this presentation I will highlight how odd the mixed alloy composition of organic materials is and how hard it has been to separate the mixed alloyed composition. I will also highlight how we are moving forward with purposefully making mixed alloyed compositions of our macrocyclic compounds BsubPcs and BsubNcs fully justified by the potential performance increase in organic solar cells.
    Co-authors/investigators will be identified during this presentation.
    #--
    Some Relevant References.
    [1] “Outdoor Performance and Stability of Boron Subphthalocyanines Applied as Electron Acceptors in Fullerene-Free Organic Photovoltaics.” Josey, D.; et al, ACS Energy Lett., 2017, 2(3), 726–732. DOI: 10.1021/acsenergylett.6b00716.
    [2] “Boron Subphthalocyanines as Electron Donors in Outdoor Lifetime Monitored Organic Photovoltaic Cells.” Garner, R.K.; et al, Solar Energy Materials and Solar Cells, 2018 176, 331-335. DOI: 10.1016/j.solmat.2017.10.018
    [3] “8.4% efficient fullerene-free organic solar cells exploiting long-range exciton energy transfer” Cnops, K.; et al., Nature Comm., 5, Article number: 3406, DOI:10.1038/ncomms4406.
    [4] “The mixed and alloyed chemical composition of chloro-(chloro)n-boron subnaphthalocyanines dictates their physical properties and performance in organic photovoltaics.” Dang, J.D.; et al, J. Mat. Chem. A., 2016, 4, 9566-9577. DOI: 10.1039/C6TA02457B
    [5] “Phenoxy-(chloro)n-boron subnaphthalocyanines; alloyed mixture, electron-accepting functionality, enhanced solubility for bulk heterojunction organic photovoltaics” Dang, J.D.; et al, ACS Omega, 2018, 3(2), 2093–2103. DOI: 10.1021/acsomega.7b01892.
    [6] “The Mixed Alloyed Chemical Composition of Chloro-(chloro)n-Boron Subnaphthalocyanines Dictates Their Performance as Electron-Donating and Hole-Transporting Materials in Organic Photovoltaics” Garner, R.K.; et al, ACS Appl. Energy Materials, 2017, 1(3), 1029-1036. DOI: 10.1021/acsaem.7b00180.
    [7] "Outdoor Stability of Chloro-(Chloro)n-Boron Subnaphthalocyanine and Chloro-Boron Subphthalocyanine as Electron Acceptors in Bilayer and Trilayer Organic Photovoltaics" Josey, D.; et al, ACS Applied Energy Materials, 2019, 2(2), 979–986. DOI:10.1021/acsaem.8b01918

    Lecture
  • Date:07ThursdayNovember 2019

    How Metal Ions in the Brain Tip the Toxic Balance of the Killer Prion Protein: Insights from NMR and EPR”

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    Time
    09:30 - 10:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Glenn L. Millhauser
    Department of Chemistry & Biochemistry University of California, Santa Cruz
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about A prion is a misfolded form of the cellular prion protein, P...»
    A prion is a misfolded form of the cellular prion protein, PrPC. Although the role of PrP in neurodegeneration was established over 30 years ago, there is little understanding of the protein’s normal function, and how misfolding leads to profound disease. Recent work shows that PrPC coordinates the cofactors Cu2+ and Zn2+, and regulates the distribution of these essential metal ions in the brain. Moreover, these metals stabilize a previously unseen fold in PrPC, the observation of which provides new insight into the mechanism of prion disease. To date, Cu2+ coordination was thought to be limited to residues within the protein’s N-terminal domain. However, new NMR and EPR experiments suggest that histidine residues in the C-terminal domain assist in stabilizing the Cu2+-promoted PrPC fold. This talk will describe combined NMR, EPR, mutagenesis and physiological studies that provide new insight into the PrPC fold and function.
    Lecture
  • Date:07ThursdayNovember 2019

    Learning and retaining representations in redundant networks

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    Time
    11:00 - 12:00
    Location
    Nella and Leon Benoziyo Building for Brain Research
    Organizer
    Department of Brain Sciences
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    AbstractShow full text abstract about Neuronal networks have many tunable parameters such as synap...»
    Neuronal networks have many tunable parameters such as synaptic strengths that are shaped during learning of a task. The number of degrees of freedom for representing a task can vastly exceed the minimum required for good performance. I will describe recent work that explores the consequences of such additional ‘redundant’ degrees of freedom for learning and for task representation. We find that additional redundancy in network parameters can make a fixed task easier to learn and compensate for deficiencies in learning rules. However, we also find that in a biologically relevant setting where synapses are subject to unavoidable noise there is an upper limit to the level of useful redundancy in a network, suggesting an optimal network size for a given task.
    Lecture
  • Date:07ThursdayNovember 2019

    A new attempt to solve the type Ia supernova problem

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    Time
    11:15 - 12:30
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerProf. Boaz Katz
    Weizmann Institute of Science
    Organizer
    Faculty of Physics
    Contact
    AbstractShow full text abstract about Supernovae distribute most of the chemical elements that we ...»
    Supernovae distribute most of the chemical elements that we are made of and are detected daily, yet we still do not know how they explode. Type Ia supernovae consist of most recorded supernovae and are likely the result of thermonuclear explosions of white dwarfs (common compact stars with mass similar to the sun and radius similar to earth), but what mechanism causes about 1% of white dwarfs to ignite remains unknown. I will describe our ongoing recent attempt to solve this puzzle that involves a new potential answer - direct collisions of white dwarfs in multiple stellar systems, new robust tools to compare explosion models to observations - in particular the use of global conservation of energy in emitted radiation, and new key observations - in particular late-time spectra of ~100 recent supernovae.
    Colloquia
  • Date:07ThursdayNovember 2019

    Uncovering the metabolic landscape of host-virus interactions of the bloom-forming alga Emiliania huxleyi

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    Time
    14:00 - 15:00
    Title
    PHD Thesis Defense
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerGuy Schleyer
    Prof. Assaf Vardi's lab., Department of Plant and Environmental Sciences
    Organizer
    Department of Plant and Environmental Sciences
    Contact
    Lecture

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