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פברואר 01, 2019
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Date:16שנידצמבר 2019סימפוזיונים
LSC Life Science Colloquim
More information שעה 11:00 - 12:00מיקום בניין לביוכימיה על שם נלה וליאון בנוזיומרצה Prof. Alexander Rudensky צרו קשר -
Date:16שנידצמבר 2019הרצאה
"A Stochastic approach to thermal density functional theory"
More information שעה 14:00 - 15:00מיקום בניין פרלמן למדעי הכימיהמרצה Dr. Yael Cytter
Faculty of Chemistry, HUJIמארגן המחלקה לכימיה מולקולרית ולמדע חומריםצרו קשר תקציר Show full text abstract about abstract Warm dense matter (WDM) is state of matter charact...» abstract
Warm dense matter (WDM) is state of matter characterized by temperatures of the order of 10,000 K and nuclear densities of magnitude significantly higher than those found in ordinary condensed matter. WDM is found in many fields of physics, chemistry, planetary sciences, and even industry: stellar and planetary science, laser-induced chemical processes in solids and on surfaces as well as plasma physics.
Nowadays, using intense lasers, WDM properties can be investigated in the laboratory, thus requiring attention to theoretical research for interpretation and understanding of the results. The theoretical description of the regime is complex, being the intermediate between condensed matter physics (i.e., quantum description) and plasma physics (classical thermodynamics). WDM is often described theoretically using finite-temperature Kohn-Sham (KS) density functional theory (DFT) calculations, with reasonably good agreement to experiments. These calculations in finite (non-zero) temperatures are costly due to the large number of fractionally occupied KS orbitals that are involved. The computational cost exhibits cubic scaling with temperature.
Stochastic density functional theory (sDFT), developed recently [1,2,3] appears to be a viable approach to WDM since it is “orbital-free” and yet fully KS. The sDFT approach uses the Fermi Dirac occupation operator to calculate the energy, and finds the electronic density and other expectation values by executing the trace in a stochastic way using random orbitals; in doing so, it skips over the step of calculating the KS orbitals. We further use the stochastic trace formula to calculate the conductivity based on Kubo-Greenwood formula. In the talk, convergence of the free energy will be discussed, as well as calculations of equations of states and statistical convergence of the conductivity when calculated based on stochastic thermal DFT. Transition to metallization in he-h systems was seen in temperature of ~60kK using the stochastic approach.
[1] R. Baer, D. Neuhauser, E. Rabani, Phys. Rev. Lett. 111, 106402 (2013)
[2] Y. Cytter, E. Rabani, D. Neuhauser, and R. Baer Phys. Rev. B 97, 115207 (2018)
[3] Yael Cytter, Eran Rabani, Daniel Neuhauser, Martin Preising, Ronald Redmer, and Roi Baer Phys. Rev. B 100, 195101 (2019)
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Date:16שנידצמבר 2019הרצאה
Learning the code of large neural populations using random nonlinear projections
More information שעה 14:15 - 14:15מרצה Department of Neurobiology, WIS, Prof. Elad Schneidman מארגן המחלקה לפיזיקה של מערכות מורכבותצרו קשר -
Date:17שלישידצמבר 2019הרצאה
“In vivo gymnastics of unassembled membrane proteins”
More information שעה 10:00 - 11:00מיקום בניין לביוכימיה על שם נלה וליאון בנוזיומרצה Dr. Nir Fluman
Dept. of Biochemistry and Biophysics, Stockholm University, Swedenמארגן המחלקה למדעים ביומולקולרייםצרו קשר תקציר Show full text abstract about A quarter of the proteome in every living cell is comprised ...» A quarter of the proteome in every living cell is comprised of helical membrane proteins. Our understanding of how they fold and assemble in vivo remains extremely poor, despite relevance to many diseases. I will describe the surprising finding that, as long a protein remains unfolded, its transmembrane helices may dynamically flip across the membrane. The sequence determinants that regulate helix flipping rates suggest that dynamic helices are a wide-spread feature of unfolded membrane proteins. The implications of this discovery to membrane protein folding and quality controls will be discussed. -
Date:17שלישידצמבר 2019הרצאה
Plant bioacoustics
More information שעה 11:30 - 12:30מיקום בניין לביוכימיה על שם נלה וליאון בנוזיומרצה Prof. Lilach Hadany
Department of Molecular Biology and Ecology of Plants, Life Sciences Faculty, Tel Aviv Universityמארגן המחלקה למדעי הצמח והסביבהצרו קשר -
Date:17שלישידצמבר 2019הרצאה
פרופ' רונן אלדן - הגיאומטריה של המידע: על ממדים גבוהים ובינה מלאכותית
More information שעה 12:00 - 12:00כותרת הגיאומטריה של המידע: על ממדים גבוהים ובינה מלאכותיתמיקום אולם ע"ש דולפי ולולה אבנרמארגן המחלקה לתקשורת ודוברותדף בית צרו קשר -
Date:17שלישידצמבר 2019הרצאה
Hidden neural states underlie canary song syntax
More information שעה 12:15 - 12:15מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Dr. Yarden Cohen
Dept of Biology, Boston Universityמארגן המחלקה למדעי המוחצרו קשר תקציר Show full text abstract about Songbirds are outstanding models of motor sequence generatio...» Songbirds are outstanding models of motor sequence generation, but commonly-studied species do not share the long-range correlations of human behavior – skills like speech where sequences of actions follow syntactic rules in which transitions between elements depend on the identity and order of past actions. To support long-range correlations, the ‘many-to-one’ hypothesis suggests that redundant premotor neural activity patterns, called ‘hidden states’, carry short-term memory of preceding actions.
To test this hypothesis, we recorded from the premotor nucleus HVC in a rarely-studied species - canaries - whose complex sequences of song syllables follow long-range syntax rules, spanning several seconds.
In song sequences spanning up to four seconds, we found neurons whose activity depends on the identity of previous, or upcoming transitions - reflecting hidden states encoding song context beyond ongoing behavior and demonstrating a deep many-to-one mapping between HVC states and song syllables. We find that context-dependent activity correlates more often with the song’s past than its future, occurs selectively in history-dependent transitions, and also encodes timing information. Together, these findings reveal a novel pattern of neural dynamics that can support structured, context-dependent song transitions and validate predictions of syntax generation by hidden neural states in a complex singer.
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Date:17שלישידצמבר 2019הרצאה
G-INCPM Special Guest Seminar: Prof. David Bennet, Director of the Rush Alzheimer's Disease Center, Rush Univ. USA - "A Roadmap to Precision Medicine for ADRD"
More information שעה 13:30 - 14:30מיקום בניין ארתור ורושל בלפר למחקר ביורפואימארגן המחלקה לתשתיות מחקר מדעי החייםצרו קשר תקציר Show full text abstract about The presentation will review two prospective analytic epidem...» The presentation will review two prospective analytic epidemiologic cohort studies of aging in which all participants are organ donors. It will summarize associations of risk factors for common chronic neurologic conditions of aging with an emphasis on Alzheimer’s dementia. It will then summarize the relation of different pathologies and resilience markers assessed at autopsy. Together this will highlight the complexity of neurodegenerative diseases. Next, it will illustrate how multi-level brain omic data can be mined to identify novel therapeutic targets. Finally, it will summarize a strategy to move these targets to a high throughput personalized medicine pipeline for compound screening.
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Date:17שלישידצמבר 2019הרצאה
Metal-binding as a new approach for peptoids folding and self assembly
More information שעה 14:00 - 15:00מיקום בניין הלן ומילטון קימלמןמרצה Dr. Galia Ma'ayan
Technion, Haifaמארגן המחלקה לביולוגיה מבנית וכימיתצרו קשר -
Date:18רביעידצמבר 2019הרצאה
Developmental Club Series 2019-20
More information שעה 10:00 - 11:00כותרת Information processing within promiscuous developmental signaling pathwaysמיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Dr. Yaron Antebi מארגן המחלקה לגנטיקה מולקולריתצרו קשר -
Date:18רביעידצמבר 2019הרצאה
At the Interface between Organic and Inorganic Matter: Interactions and Design of Simple Functional Coatings
More information שעה 11:00 - 12:00מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Prof. Meital Reches
Institute of Chemistry, HUJIמארגן המחלקה לכימיה מולקולרית ולמדע חומריםצרו קשר תקציר Show full text abstract about Several natural processes are mediated by the interactions...»
Several natural processes are mediated by the interactions between organic and inorganic materials. The immune response towards an implant inserted into the body is mediated by proteins. Composite materials are formed by the interactions of organic materials (usually proteins) and minerals. Biofouling, the process in which organisms attached to surfaces, is also mediated by organic molecules. Understanding the nature of interactions between organic and inorganic materials will bring to the development of improved implants, new composites and antifouling materials.
This lecture will present single-molecule force spectroscopy measurements of the interactions between individual biomolecules (either amino acid residues or short peptides) and inorganic surfaces in aqueous solution. Using this method, we were able to measure low adhesion forces and could clearly determine the strength of interactions between individual amino acid residues and inorganic substrates. Our results with peptides also shed light on the factors that control the interactions at the organic-inorganic interface.
Based on our knowledge from single molecule experiments, we designed a short peptide (tripeptide) that can spontaneously form a coating that resists biofilm formation. Our results clearly demonstrate the formation of a coating on various surfaces (glass, titanium, silicon oxide, metals and polymers). This coating prevents the first step of antifouling, which involves the adsorption of bioorganic molecules to the substrate. In addition, it significantly reduces the attachment of various organisms such as bacteria and fungi to surfaces. Another variation of this peptide can encourage the adhesion of mammalian cells while preventing biofilm formation.
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Date:18רביעידצמבר 2019הרצאה
Special Guest Seminar
More information שעה 12:00 - 13:00כותרת "Deconstructing the replication program of enteroviruses in human cells"מיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Dr. Orly Laufman מארגן המחלקה לגנטיקה מולקולריתצרו קשר -
Date:18רביעידצמבר 2019הרצאה
Decipher the properties of sex-shared yet dimorphic neuronal circuits
More information שעה 15:15 - 15:15מיקום המשכן ללימודי מוסמכים על-שם דוד לופאטימרצה Vladyslava Pechuk (MSc Thesis Defense/PhD Proposal)
Dr. Meital Oren Lab Dept of Neurobiologyמארגן המחלקה למדעי המוחצרו קשר תקציר Show full text abstract about The nervous system of sexually reproducing species is built ...» The nervous system of sexually reproducing species is built to accommodate their sex-specific needs and thus contains sexually dimorphic properties. Males and females respond to environmental sensory cues and transform the input into sexually dimorphic traits. New findings reveal a significant difference in the way the two sexes in the nematode C. elegans respond to aversive stimuli. Further analysis of the function of the circuit for aversive behaviors unveiled how stimuli elicit non-dimorphic sensory neuronal activity, proceeded by dimorphic postsynaptic interneuron activity, generating the sexually dimorphic behavior. Here, we propose to uncover how genetic sex defines the properties of the sex-shared circuit for aversive behaviors. We will explore the circuit at the behavioral, connectome and genetic levels. Using calcium imaging, optogenetics, synaptic trans-labeling, transcriptome profiling and a candidate gene approach we will map the functional connections and define the dimorphic responses of all the cells in the avoidance circuit in both sexes. Since in vertebrates and invertebrates, males and females share most of the nervous system, studies of the development of dimorphic aspects of the shared nervous system are crucial for understanding the effects of sex on brain and behavior and specifically, how do changes in connectivity generate dimorphic behaviors, and how both are modulated by the genetic sex. -
Date:19חמישידצמבר 2019כנסים
Sela Symposium
More information שעה 08:00 - 08:00מיקום מרכז כנסים על-שם דויד לופאטייושב ראש Steffen Jungמארגן המחלקה לאימונולוגיה מערכתית -
Date:19חמישידצמבר 2019הרצאה
Simulating the whole of magnetic resonance
More information שעה 09:30 - 10:30מיקום בניין פרלמן למדעי הכימיהמרצה Prof. Ilia Kuprov
University of Southampton, UKמארגן המחלקה לכימיה מולקולרית ולמדע חומריםצרו קשר תקציר Show full text abstract about In a couple of years from now, we will finish kernel program...» In a couple of years from now, we will finish kernel programming for Spinach – a spin dynamics simulation library that supports all types of magnetic resonance spectroscopy, from Gd3+ DEER, through DNP and NMR, and all the way to singlet state diffusion MRI, including chemical kinetics, optimal control, and advanced relaxation theories. This level of generality hinges on:
1. The ability to treat classical degrees of freedom (diffusion, hydrodynamics, radiofrequency and microwave phases, stochastic tumbling, etc.) at the same conceptual level as spin degrees of freedom – the corresponding classical equations of motion must be integrated into the density matrix formalism.
2. The ability to survive enormous Kronecker products. A well digitised medical phantom would have at least a hundred points in each of the three directions, meaning a dimension of at least 1003 = 106 for the spatial dynamics generator matrices. At the same time, a typical radical contains upwards of ten coupled spins, meaning a Liouville space dimension of at least 410. Direct products of spin and spatial dynamics generators would then have the dimension in excess of 1012 even before chemical kinetics is considered.
3. Code parallelisation over cluster architectures, including the possibility of using a GPU on each node of the cluster. The principal problem is parallelisation mode switching between powder averages, indirect dimensions of pulse sequences, frequency points of frequency domain simulations, etc. – each simulation type would in general require a different mode of parallelisation and GPU utilisation.
This report is about solving all of this, and on where the dark art of simulating a time-domain magnetic resonance experiment stands at the moment. Two recent innovations are the abandonment of Liouville equation in favour of Fokker-Planck equation as the core formalism, and the use of tensor structured objects that never open Kronecker products. A separate story is recent GPUs: NVidia Tesla V100 performs ~1013 double-precision multiplications per second – an astounding amount of computing power that is surprisingly easy to use.
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Date:19חמישידצמבר 2019סימפוזיונים
Overcoming resolution limits with quantum sensing by utilising error correction
More information שעה 11:15 - 12:30מיקום בניין הפיזיקה ע"ש עדנה וק.ב. וייסמןמרצה Alex Ratzker
HUJIמארגן הפקולטה לפיזיקהצרו קשר תקציר Show full text abstract about Quantum sensing and metrology exploit quantum aspects of ind...» Quantum sensing and metrology exploit quantum aspects of individual and complex systems to measure a physical quantity.
Quantum sensing targets a broad spectrum of physical quantities, of both static and time-dependent types.
While the most important characteristic for static quantities is sensitivity, for time-dependent signals it is the resolution, i.e. the ability to resolve two different frequencies.
The decay time of the probe imposes a fundamental limit on the quantum sensing efficiency. While error correction methods can prolong this time it was not clear if such a procedure could be used
in a quantum sensing protocol. In this talk I will present a study of spectral resolution problems with quantum sensors, and the development of a new super-resolution method that relies on quantum features for which the limitation imposed by the finite decay time can be partially overcome by error correction.
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Date:19חמישידצמבר 2019הרצאה
THE ROLE OF THE UBIQUITIN SYSTEM IN RAS DRIVEN DISEASE
More information שעה 14:00 - 15:00מיקום בניין ע"ש מקס ולילאן קנדיוטימרצה Prof. Anna Sablina מארגן המחלקה לאימונולוגיה ורגנרציה ביולוגיתצרו קשר -
Date:19חמישידצמבר 2019הרצאה
Chemical and Biological Physics Guest Seminar
More information שעה 15:00 - 15:00כותרת Quantum theory in practiceמיקום בניין פרלמן למדעי הכימיהמרצה Prof. Aharon Brodutch, Amiram Debesh
University of Torontoמארגן המחלקה לפיזיקה כימית וביולוגיתצרו קשר תקציר Show full text abstract about Quantum theory has been incredibly successful at explaining ...» Quantum theory has been incredibly successful at explaining known phenomena and making new predictions that have led to some of the most important scientific and technological breakthroughs in the past century. Quantum computers are arguably the boldest prediction of the theory, but the level of control required to build them is extremely challenging. The requirements for building universal fault tolerant quantum computers (i.e computers that can run any quantum algorithm with high accuracy) are far beyond current capabilities, but less powerful (intermediate) quantum machines are already available, with some accessible online. The minimal requirements for such intermediate machines to significantly outperform ordinary (classical) computers is currently an open area of research. One approach to study the capabilities of intermediate quantum machines, is to study how small subsystems become correlated (and entangled) during a computation. I will provide an overview of work in this direction with some surprising results on the possible role of quantum entanglement. These results provide new insights into quantum theory and quantum technology. -
Date:19חמישידצמבר 2019הרצאה
Seminar for thesis defense, Maya Voichek
More information שעה 15:00 - 16:00כותרת “Chatty microbes - Regulation of communication systems in bacteria”מיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Maya Voichek מארגן המחלקה לגנטיקה מולקולריתצרו קשר -
Date:19חמישידצמבר 2019הרצאה
Pelletron meeting - by invitation only
More information שעה 16:00 - 17:30צרו קשר
