Bioinformatics: LSCF Publications

  1. Arbel-Goren R., Dassa B., Zhitnitsky A., Valladares A., Herrero A., Flores E. & Stavans J. (2024). Spatio-temporal coherence of circadian clocks and temporal control of differentiation in Anabaena filaments.  mSystems. 2024 Jan 23 , 9 (1).
  2. Stroganov  S.,  Harris   .,  Fellus-Alyagor   .,  Ben Moyal  L.,  Plitman Mayo   ., Golani O., Hirsch D., Ben-Dor S., Brandis  A.,  Mehlman   .,  Kovo   .,  Biron-Shental  T., Dekel N. & Neeman M. (2024). The differential regulation of placenta trophoblast bisphosphoglycerate mutase in fetal growth restriction: preclinical study in mice and observational histological study of human placenta.  eLife. 2024 Feb 5 , 13 .
  3. Boura-Halfon S., Haffner-Krausz R., Ben-Dor S., Kim J. S. & Jung S. (2024). Tackling Tissue Macrophage Heterogeneity by SplitCre Transgenesis.  . 2024, :481-503.
  4. Nevo S., Frenkel N., Kadouri N., Gome T., Rosenthal N., Givony T., Avin A., Peligero Cruz C., Kedmi M., Lindzen M., Ben Dor S., Damari G., Porat Z., Haffner-Krausz R., Keren-Shaul H., Yarden Y., Munitz A., Leshkowitz D., Goldfarb Y. & Abramson J. (2024). Tuft cells and fibroblasts promote thymus regeneration through ILC2-mediated type 2 immune response.  Science immunology. 2024 Jan 12 , 9 (91).
  5. Nevo S., Frenkel N., Kadouri N., Gome T., Rosenthal N., Givony T., Avin A., Peligero Cruz C., Kedmi M., Lindzen M., Ben Dor S., Damari G., Porat Z., Haffner-Krausz R., Keren-Shaul H., Yarden Y., Munitz A., Leshkowitz D., Goldfarb Y. & Abramson J. (2024). Tuft cells and fibroblasts promote thymus regeneration through ILC2-mediated type 2 immune response.  Science immunology. 2024 Jan 12 , 9 (91).
  6. Chen Q., Leshkowitz D., Li H., van Impel A., Schulte-Merker S., Amit I., Rizzoti K. & Levkowitz G. (2023). Neural plate progenitors give rise to both anterior and posterior pituitary cells.  Developmental Cell. 2023 Dec 4 , 58 (23):2652-2665.e6.
  7. Bornstein B., Heinemann-Yerushalmi L., Krief S., Adler R., Dassa B., Leshkowitz D., Kim M., Bewick G., Banks R. W. & Zelzer E. (2023). Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.  eLife. 2023 Feb 6 , 12 .
  8. Levi N., Papismadov N., Majewska J., Roitman L., Wigoda N., Eilam R., Tsoory M., Rotkopf R., Ovadya Y., Akiva H., Regev O. & Krizhanovsky V. (2023). p21 facilitates chronic lung inflammation via epithelial and endothelial cells.  Aging (Albany, NY.). 2023 Apr 15 , 15 (7):2395-2417.
  9. Sapoznikov A., Kozlovski S., Levi N., Feigelson S. W., Regev O., Davidzohn N., Ben-Dor S., Haffner-Krausz R., Feldmesser E., Wigoda N., Petrovich-Kopitman E., Biton M. & Alon R. (2023). Dendritic cell ICAM-1 strengthens synapses with CD8 T cells but is not required for their early differentiation.  Cell Reports. 2023 Aug 29 , 42 (8).
  10. Bigelman E., Pasmanik-Chor M., Dassa B., Itkin M., Malitsky S., Dorot O., Pichinuk E., Kleinberg Y., Keren G. & Entin-Meer M. (2023). Kynurenic acid, a key L-tryptophan-derived metabolite, protects the heart from an ischemic damage.  PLoS ONE. 2023 Aug 24 , 18 (8).
  11. Oftedal B. E., Berger A. H., Bruserud Ø., Goldfarb Y., Sulen A., Breivik L., Hellesen A., Ben-Dor S., Haffner-Krausz R., Knappskog P. M., Johansson S., Wolff A. S., Bratland E., Abramson J. & Husebye E. S. (2023). A partial form of AIRE deficiency underlies a mild form of autoimmune polyendocrine syndrome type 1.  The Journal of Clinical Investigation. 2023 Nov 1 , 133 (21).
  12. Bornstein B., Heinemann-Yerushalmi L., Krief S., Adler R., Dassa B., Leshkowitz D., Kim M., Bewick G., Banks R. W. & Zelzer E. (2023). Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.  eLife. 2023 Feb 6 , 12 .
  13. Abada Manelis A., Beiralas R., Narvaez D., Sperfeld M., Duchin Rapp Y., Lipsman V., Yuda L., Cohen B., Carmieli R., Ben-Dor S., Rocha J., Zhang I. H., Babbin A. R. & Segev E. (2023). Aerobic bacteria produce nitric oxide via denitrification and promote algal population collapse.  The ISME Journal. 2023 Aug , 17 (8):1167-1183.
  14. Swaminathan A., Gliksberg M., Anbalagan S., Wigoda N. & Levkowitz G. (2023). Stress resilience is established during development and is regulated by complement factors.  Cell Reports. 2023 Jan 31 , 42 (1).
  15. Fox H., Ben-Dor S., Doron-Faigenboim A., Goldsmith M., Klein T. & David-Schwartz R. (2023). Carbohydrate dynamics in Populus trees under drought: An expression atlas of genes related to sensing, translocation, and metabolism across organs.  Physiologia Plantarum. 2023 Sept , 175 (5).
  16. Gruper Y., Wolff A. S. B., Glanz L., Spoutil F., Marthinussen M. C., Osickova A., Herzig Y., Goldfarb Y., Aranaz-Novaliches G., Dobeš J., Kadouri N., Ben-Nun O., Binyamin A., Lavi B., Givony T., Khalaila R., Gome T., Wald T., Mrazkova B., Sochen C., Besnard M., Ben-Dor S., Feldmesser E., Orlova E. M., Hegedűs C., Lampé I., Papp T., Felszeghy S., Sedlacek R., Davidovich E., Tal N., Shouval D. S., Shamir R., Guillonneau C., Szondy Z., Lundin K. E. A., Osicka R., Prochazka J., Husebye E. S. & Abramson J. (2023). Autoimmune amelogenesis imperfecta in patients with APS-1 and coeliac disease.  Nature. 2023 Dec 21 , 624 (7992):653-662.
  17. Barak-Gavish N., Dassa B., Kuhlisch C., Nussbaum I., Brandis A., Rosenberg G., Avraham R. & Vardi A. (2023). Bacterial lifestyle switch in response to algal metabolites.  eLife. 2023 Jan 24 , 12 .
  18. Zelnik I. D., Mestre B., Weinstein J. J., Dingjan T., Izrailov S., Ben-Dor S., Fleishman S. J. & Futerman A. H. (2023). Computational design and molecular dynamics simulations suggest the mode of substrate binding in ceramide synthases.  Nature Communications. 2023 Apr 22 , 14 (1).
  19. Michael D., Feldmesser E., Gonen C., Furth N., Maman A., Heyman O., Argoetti A., Tofield A., Baichman-Kass A., Ben-Dov A., Benbenisti D., Hen N., Rotkopf R., Ganci F., Blandino G., Ulitsky I. & Oren M. (2023). miR-4734 conditionally suppresses ER stress-associated proinflammatory responses.  FEBS Letters. 2023 May , 597 (9):1233-1245.
  20. Brivio E., Kos A., Ulivi A. F., Karamihalev S., Ressle A., Stoffel R., Hirsch D., Stelzer G., Schmidt M. V., Lopez J. P. & Chen A. (2023). Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus.  Cell Reports. 2023 Aug 29 , 42 (8).