Bioinformatics: LSCF Publications

  1. Fromm A., Schatz D., Ben-Dor S., Feldmesser E. & Vardi A. (2022). Complete Genome Sequence of Emiliania huxleyi Virus Strain M1, Isolated from an Induced E. huxleyi Bloom in Bergen, Norway.  Microbiology Resource Announcements. 2022 Apr , .
  2. Alfandari D., Ben Ami Pilo H., Abou Karam P., Dagan O., Joubran C., Rotkopf R., Regev-Rudzki N. & Porat Z. (2022). Monitoring Distribution Dynamics of EV RNA Cargo Within Recipient Monocytes and Macrophages.  Frontiers in Cellular and Infection Microbiology. 2022 Jan , 11 .
  3. Fromm A., Schatz D., Ben-Dor S., Feldmesser E. & Vardi A. (2022). Complete Genome Sequence of Emiliania huxleyi Virus Strain M1, Isolated from an Induced E. huxleyi Bloom in Bergen, Norway.  Microbiology Resource Announcements. 2022 Apr , .
  4. Dey S., Prilusky J. & Levy E. D. (2022). QSalignWeb: A Server to Predict and Analyze Protein Quaternary Structure.  Frontiers in Molecular Biosciences. 2022 Jan , 8 .
  5. Tuval A., Brilon Y., Azogy H., Moskovitz Y., Leshkowitz D., Salame T. M., Minden M. D., Tal P., Rotter V., Oren M., Kaushansky N. & Shlush L. I. (2022). Pseudo-mutant P53 is a unique phenotype of DNMT3A -mutated pre-leukemia.  Haematologica (Roma). 2022 Feb , .
  6. Goldsmith M., Barad S., Knafo M., Savidor A., Ben-Dor S., Brandis A., Mehlman T., Peleg Y., Albeck S., Dym O., Ben-Zeev E., Barbole R. S., Aharoni A. & Reich Z. (2022). Identification and characterization of the key enzyme in the biosynthesis of the neurotoxin β-ODAP in grass pea.  The journal of Biological chemistry. 2022 Mar , .
  7. Ben Ami Pilo H., Khan Khilji S., Lühle J., Biskup K., Levy Gal B., Rosenhek Goldian I., Alfandari D., Revach O., Kiper E., Morandi M. I., Rotkopf R., Porat Z., Blanchard V., Seeberger P. H., Regev‐Rudzki N. & Moscovitz O. (2022). Sialylated N‐glycans mediate monocyte uptake of extracellular vesicles secreted from Plasmodium falciparum‐infected red blood cells.  Journal of Extracellular Biology. 2022 Feb , 1 (2).
  8. Dekel E., Yaffe D., Rosenhek-Goldian I., Ben-Nissan G., Ofir-Birin Y., Morandi M. I., Ziv T., Sisquella X., Pimentel M. A., Nebl T., Kapp E., Ohana Daniel Y., Karam P. A., Alfandari D., Rotkopf R., Malihi S., Temin T. B., Mullick D., Revach O. Y., Rudik A., Gov N. S., Azuri I., Porat Z., Bergamaschi G., Sorkin R., Wuite G. J., Avinoam O., Carvalho T. G., Cohen S. R., Sharon M. & Regev-Rudzki N. (2021). 20S proteasomes secreted by the malaria parasite promote its growth.  Nature Communications. 2021 Feb , 12 (1).
  9. Kult S., Olender T., Osterwalder M., Markman S., Leshkowitz D., Krief S., Blecher-Gonen R., Ben-Moshe S., Farack L., Keren-Shaul H., Salame T. M., Capellini T. D., Itzkovitz S., Amit I., Visel A. & Zelzer E. (2021). Bi-fated tendon-to-bone attachment cells are regulated by shared enhancers and KLF transcription factors.  eLife. 2021 Jan , 10 .
  10. Soll M., Goldshtein H., Rotkopf R., Russek-Blum N. & Gross Z. (2021). A Synthetic SOD/Catalase Mimic Compound for the Treatment of ALS.  Antioxidants. 2021 May , 10 (6).
  11. Shemi A., Alcolombri U., Schatz D., Farstey V., Vincent F., Rotkopf R., Ben-Dor S., Frada M. J., Tawfik D. S. & Vardi A. (2021). Dimethyl sulfide mediates microbial predator–prey interactions between zooplankton and algae in the ocean.  Nature Microbiology. 2021 Oct , 6 (11):1357-1366.
  12. Maddalena M., Mallel G., Nataraj N. B., Shreberk-Shaked M., Hassin O., Mukherjee S., Arandkar S., Rotkopf R., Kapsack A., Lambiase G., Pellegrino B., Ben-Isaac E., Golani O., Addadi Y., Hajaj E., Eilam R., Straussman R., Yarden Y., Lotem M. & Oren M. (2021). TP53 missense mutations in PDAC are associated with enhanced fibrosis and an immunosuppressive microenvironment.  Proceedings of the National Academy of Sciences - PNAS. 2021 Jun , 118 (23).
  13. Raz A., Dahan-Meir T., Melamed-Bessudo C., Leshkowitz D. & Levy A. A. (2021). Redistribution of Meiotic Crossovers Along Wheat Chromosomes by Virus-Induced Gene Silencing.  Frontiers in Plant Science. 2021 Feb , 11 .
  14. Vardi A., Pri-Or A., Wigoda N., Grishchuk Y. & Futerman A. H. (2021). Proteomics analysis of a human brain sample from a mucolipidosis type IV patient reveals pathophysiological pathways.  Orphanet Journal of Rare Diseases. 2021 Jan , 16 (1).
  15. Doron E., Koppel I., Abraham O., Rishal I., Smith T. P., Buchanan C. N., Sahoo P. K., Kadlec J., Oses-Prieto J. A., Kawaguchi R., Alber S., Zahavi E. E., Di Matteo P., Di Pizio A., Song D. A., Okladnikova N., Gordon D., Ben-Dor S., Haffner-Krausz R., Coppola G., Burlingame A. L., Jungwirth P., Twiss J. L. & Fainzilber M. (2021). The glycine arginine-rich domain of the RNA-binding protein nucleolin regulates its subcellular localization.  The EMBO Journal. 2021 Sept , .
  16. Shemi A., Alcolombri U., Schatz D., Farstey V., Vincent F., Rotkopf R., Ben-Dor S., Frada M. J., Tawfik D. S. & Vardi A. (2021). Dimethyl sulfide mediates microbial predator–prey interactions between zooplankton and algae in the ocean.  Nature Microbiology. 2021 Oct , 6 (11):1357-1366.
  17. Camargo S., Leshkowitz D., Dassa B., Mariscal V., Flores E., Stavans J. & Arbel-Goren R. (2021). Impaired cell-cell communication in the multicellular cyanobacterium Anabaena affects carbon uptake, photosynthesis, and the cell wall.  iScience. 2021 Jan , 24 (1).
  18. Kalaora S., Nagler A., Nejman D., Alon M., Barbolin C., Barnea E., Ketelaars S. L. C., Cheng K., Vervier K., Shental N., Bussi Y., Rotkopf R., Levy R., Benedek G., Trabish S., Dadosh T., Levin-Zaidman S., Geller L. T., Wang K., Greenberg P., Yagel G., Peri A., Fuks G., Bhardwaj N., Reuben A., Hermida L., Johnson S. B., Galloway-Peña J. R., Shropshire W. C., Bernatchez C., Haymaker C., Arora R., Roitman L., Eilam R., Weinberger A., Lotan-Pompan M., Lotem M., Levin Y., Lawley T. D., Adams D. J., Levesque M. P., Besser M. J., Schachter J., Golani O., Segal E., Ruppin E., Kvistborg P., Peterson S. N., Wargo J. A., Straussman R. & Samuels Y. (2021). Identification of bacteria-derived HLA-bound peptides in melanoma.  Nature (London). 2021 Mar , 592 (7852):138-143.
  19. Ulman A., Levin T., Dassa B., Javitt A., Kacen A., Shmueli M. D., Eisenberg-Lerner A., Sheban D., Fishllevich S., Levy E. D. & Merbl Y. (2021). Altered Protein Abundance and Localization Inferred from Sites of Alternative Modification by Ubiquitin and SUMO.  Journal of Molecular Biology. 2021 Oct , 433 (21).
  20. Abada Manelis A., Sperfeld M., Carmieli R., Ben-Dor S., Zhang I. H., Babbin A. R. & Segev E. (2021). Aerobic Bacteria Produce Nitric Oxide via Denitrification and Trigger Algal Population Collapse.  bioArxiv. 2021 Nov , .