Bioinformatics: LSCF Publications

  1. Kazachkova Y., Zemach I., Panda S., Bocobza S., Vainer A., Rogachev I., Dong Y., Ben-Dor S., Veres D., Kanstrup C., Lambertz S. K., Crocoll C., Hu Y., Shani E., Michaeli S., Nour-Eldin H. H., Zamir D. & Aharoni A. (2021). The GORKY glycoalkaloid transporter is indispensable for preventing tomato bitterness.  Nature Plants. 2021 Apr , 7 :468-480.
  2. Grunwald Y., Wigoda N., Sade N., Yaaran A., Torne T., Gosa S. C., Moran N. & Moshelion M. (2021). Arabidopsis leaf hydraulic conductance is regulated by xylem sap pH, controlled, in turn, by a P-type H + -ATPase of vascular bundle sheath cells.  The Plant journal : for cell and molecular biology. 2021 Apr , 106 (2):301-313.
  3. Castro C., Johnson R. J., Kieffer B., Means J. A., Taylor A., Telford J., Thompson L. K., Sussman J. L., Prilusky J. & Theis K. (2021). A practical guide to teaching with Proteopedia.  Biochemistry and Molecular Biology Education. 2021 Jun , .
  4. Pewzner-Jung Y., Joseph T., Blumenreich S., Vardi A., Ferreira N. S., Cho S. M., Eilam R., Tsoory M., Biton I. E., Brumfeld V., Haffner-Krausz R., Brenner O., Sharabi N., Addadi Y., Salame T. M., Rotkopf R., Wigoda N., Yayon N., Merrill A. H., Schiffmann R. & Futerman A. H. (2021). Brain pathology and cerebellar purkinje cell loss in a mouse model of chronic neuronopathic Gaucher disease.  Progress in Neurobiology. 2021 Feb , 197 .
  5. Daniel E., Maksimainen M. M., Smith N., Ratas V., Biterova E., Murthy S. N., Tanvir Rahman M., Kiema T. R., Sridhar S., Cordara G., Dalwani S., Venkatesan R., Prilusky J., Dym O., Lehtio L., Kristian Koski M., Ashton A. W., Sussman J. L. & Wierenga R. K. (2021). IceBear: An intuitive and versatile web application for research-data tracking from crystallization experiment to PDB deposition.  Acta Crystallographica Section D: Structural Biology. 2021 Feb , 77 (2):151-163.
  6. Roncato F., Regev O., Feigelson S. W., Yadav S. K., Kaczmarczyk L., Levi N., Drago-Garcia D., Ovadia S., Kizner M., Addadi Y., Sabino J. C., Ovadya Y., de Almeida S. F., Feldmesser E., Gerlitz G. & Alon R. (2021). Reduced Lamin A/C Does Not Facilitate Cancer Cell Transendothelial Migration but Compromises Lung Metastasis.  Cancers. 2021 May , 13 (10).
  7. Pewzner-Jung Y., Joseph T., Blumenreich S., Vardi A., Ferreira N. S., Cho S. M., Eilam R., Tsoory M., Biton I. E., Brumfeld V., Haffner-Krausz R., Brenner O., Sharabi N., Addadi Y., Salame T. M., Rotkopf R., Wigoda N., Yayon N., Merrill A. H., Schiffmann R. & Futerman A. H. (2021). Brain pathology and cerebellar purkinje cell loss in a mouse model of chronic neuronopathic Gaucher disease.  Progress in Neurobiology. 2021 Feb , 197 .
  8. Dekel E., Yaffe D., Rosenhek-Goldian I., Ben-Nissan G., Ofir-Birin Y., Morandi M. I., Ziv T., Sisquella X., Pimentel M. A., Nebl T., Kapp E., Ohana Daniel Y., Karam P. A., Alfandari D., Rotkopf R., Malihi S., Temin T. B., Mullick D., Revach O. Y., Rudik A., Gov N. S., Azuri I., Porat Z., Bergamaschi G., Sorkin R., Wuite G. J., Avinoam O., Carvalho T. G., Cohen S. R., Sharon M. & Regev-Rudzki N. (2021). 20S proteasomes secreted by the malaria parasite promote its growth.  Nature Communications. 2021 Feb , 12 (1).
  9. Dekel E., Yaffe D., Rosenhek-Goldian I., Ben-Nissan G., Ofir-Birin Y., Morandi M. I., Ziv T., Sisquella X., Pimentel M. A., Nebl T., Kapp E., Ohana Daniel Y., Karam P. A., Alfandari D., Rotkopf R., Malihi S., Temin T. B., Mullick D., Revach O. Y., Rudik A., Gov N. S., Azuri I., Porat Z., Bergamaschi G., Sorkin R., Wuite G. J., Avinoam O., Carvalho T. G., Cohen S. R., Sharon M. & Regev-Rudzki N. (2021). 20S proteasomes secreted by the malaria parasite promote its growth.  Nature Communications. 2021 Feb , 12 (1).
  10. Kult S., Olender T., Osterwalder M., Markman S., Leshkowitz D., Krief S., Blecher-Gonen R., Ben-Moshe S., Farack L., Keren-Shaul H., Salame T. M., Capellini T. D., Itzkovitz S., Amit I., Visel A. & Zelzer E. (2021). Bi-fated tendon-to-bone attachment cells are regulated by shared enhancers and KLF transcription factors.  eLife. 2021 Jan , 10 .
  11. Camargo S., Leshkowitz D., Dassa B., Mariscal V., Flores E., Stavans J. & Arbel-Goren R. (2021). Impaired cell-cell communication in the multicellular cyanobacterium Anabaena affects carbon uptake, photosynthesis, and the cell wall.  iScience. 2021 Jan , 24 (1).
  12. Raz A., Dahan-Meir T., Melamed-Bessudo C., Leshkowitz D. & Levy A. A. (2021). Redistribution of Meiotic Crossovers Along Wheat Chromosomes by Virus-Induced Gene Silencing.  Frontiers in Plant Science. 2021 Feb , 11 .
  13. Vardi A., Pri-Or A., Wigoda N., Grishchuk Y. & Futerman A. H. (2021). Proteomics analysis of a human brain sample from a mucolipidosis type IV patient reveals pathophysiological pathways.  Orphanet Journal of Rare Diseases. 2021 Jan , 16 (1).
  14. Camargo S., Leshkowitz D., Dassa B., Mariscal V., Flores E., Stavans J. & Arbel-Goren R. (2021). Impaired cell-cell communication in the multicellular cyanobacterium Anabaena affects carbon uptake, photosynthesis, and the cell wall.  iScience. 2021 Jan , 24 (1).
  15. Kalaora S., Nagler A., Nejman D., Alon M., Barbolin C., Barnea E., Ketelaars S. L. C., Cheng K., Vervier K., Shental N., Bussi Y., Rotkopf R., Levy R., Benedek G., Trabish S., Dadosh T., Levin-Zaidman S., Geller L. T., Wang K., Greenberg P., Yagel G., Peri A., Fuks G., Bhardwaj N., Reuben A., Hermida L., Johnson S. B., Galloway-Peña J. R., Shropshire W. C., Bernatchez C., Haymaker C., Arora R., Roitman L., Eilam R., Weinberger A., Lotan-Pompan M., Lotem M., Levin Y., Lawley T. D., Adams D. J., Levesque M. P., Besser M. J., Schachter J., Golani O., Segal E., Ruppin E., Kvistborg P., Peterson S. N., Wargo J. A., Straussman R. & Samuels Y. (2021). Identification of bacteria-derived HLA-bound peptides in melanoma.  Nature (London). 2021 Mar , 592 (7852):138-143.
  16. Shemer A., Scheyltjens I., Frumer G. R., Kim J., Grozovski J., Ayanaw S., Dassa B., Van Hove H., Chappell-Maor L., Boura-Halfon S., Leshkowitz D., Mueller W., Maggio N., Movahedi K. & Jung S. (2020). Interleukin-10 Prevents Pathological Microglia Hyperactivation following Peripheral Endotoxin Challenge.  Immunity. 2020 Oct , (5):1033-+.
  17. Agam A., Azuri I., Pinkas I., Gopher A. & Natalio F. (2020). Estimating temperatures of heated Lower Palaeolithic flint artefacts.  Nature Human Behaviour. 2020 Oct , 4 (10):221-+.
  18. Gross-Vered M., Trzebanski S., Shemer A., Bernshtein B., Curato C., Stelzer G., Salame T., David E., Boura-Halfon S., Chappell-Maor L., Leshkowitz D. & Jung S. (2020). Defining murine monocyte differentiation into colonic and ileal macrophages.  eLife. 2020 Jan , 9 .
  19. Cohen B., Tempelhof H., Raz T., Oren R., Nicenboim J., Bochner F., Even R., Jelinski A., Eilam R., Ben-Dor S., Adaddi Y., Golani O., Lazar S., Yaniv K. & Neeman M. (2020). BACH family members regulate angiogenesis and lymphangiogenesis by modulating VEGFC expression.  Life Science Alliance. 2020 Apr , 3 (4).
  20. Zaidman D., Prilusky J. & London N. (2020). PRosettaC: Rosetta based modeling of PROTAC mediated ternary complexes.  Journal of Chemical Information and Modeling. 2020 Oct , 60 (10):4894-4903.