Bioinformatics: LSCF Publications

  1. Furth N., Pateras I. S., Rotkopf R., Vlachou V., Rivkin I., Schmitt I., Bakaev D., Gershoni A., Ainbinder E., Leshkowitz D., Johnson R. L., Gorgoulis V. G., Oren M. & Aylon Y. (2018). LATS1 and LATS2 suppress breast cancer progression by maintaining cell identity and metabolic state.  Life science alliance. 2018 Oct , 1 (5).
  2. Adler-Abramovich L., Arnon Z. A., Sui X., Azuri I., Cohen H., Hod O., Kronik L., Shimon L. J. W., Wagner H. D. & Gazit E. (2018). Bioinspired Flexible and Tough Layered Peptide Crystals.  Advanced Materials. 2018 Feb 1 , 30 (5).
  3. Weill U., Yofe I., Sass E., Stynen B., Davidi D., Natarajan J., Ben-Menachem R., Avihou Z., Goldman O., Harpaz N., Chuartzman S., Kniazev K., Knoblach B., Laborenz J., Boos F., Kowarzyk J., Ben-Dor S., Zalckvar E., Herrmann J. M., Rachubinski R. A., Pines O., Rapaport D., Michnick S. W., Levy E. D. & Schuldiner M. (2018). Genome-wide SWAp-Tag yeast libraries for proteome exploration.  Nature Methods. 2018 Aug , 15 (8):617-622.
  4. Anbalagan S., Gordon L., Blechman J., Matsuoka R. L., Rajamannar P., Wircer E., Biran J., Reuveny A., Leshkowitz D., Stainier D. Y. R. & Levkowitz G. (2018). Pituicyte Cues Regulate the Development of Permeable Neuro-Vascular Interfaces.  Developmental Cell. 2018 Dec 17 , 47 (6):711-726.e5.
  5. Wolf-Levy H., Javitt A., Eisenberg-Lerner A., Kacenl A., Ulman A., Sheban D., Dassa B., Fishbain-Yoskovitz V., Carmona-Rivera C., Kramer M. P., Nudel N., Regev I., Zahavi L., Elinger D., Kaplan M. J., Morgenstern D., Levin Y. & Merbl Y. (2018). Revealing the cellular degradome by mass spectrometry analysis of proteasome-cleaved peptides.  Nature Biotechnology. 2018 Nov , 36 (11):1110-1116.
  6. Barak-Gavish N., Frada M. J., Ku C., Lee P. A., DiTullio G. R., Malitsky S., Aharoni A., Green S. J., Rotkopf R., Kartvelishvily E., Sheyn U., Schatz D. & Vardi A. (2018). Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP.  Science Advances. 2018 Oct 24 , 4 (10).
  7. Sheyn U., Rosenwasser S., Lehahn Y., Barak-Gavish N., Rotkopf R., Bidle K. D., Koren I., Schatz D. & Vardi A. (2018). Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export.  ISME Journal. 2018 Mar , 12 (3):704-713.
  8. Herzig Y., Nevo S., Bornstein C., Brezis M. R., Ben-Hur S., Shkedy A., Eisenberg-Bord M., Levi B., Delacher M., Goldfarb Y., David E., Weinberger L., Viukov S., Ben-Dor S., Giraud M., Hanna J. H., Breiling A., Lyko F., Amit I., Feuerer M. & Abramson J. (2017). Transcriptional programs that control expression of the autoimmune regulator gene Aire.  Nature Immunology. 2017 Feb 1 , 18 (2):161-172.
  9. Yosef R., Pilpel N., Papismadov N., Gal H., Ovadya Y., Vadai E., Miller S., Porat Z., Ben-Dor S. & Krizhanovsky V. (2017). p21 maintains senescent cell viability under persistent DNA damage response by restraining JNK and caspase signaling.  EMBO Journal. 2017 Aug 1 , 36 (15):2280-2295.
  10. Tickotsky N., Sagiv T., Prilusky J., Shifrut E. & Friedman N. (2017). McPAS-TCR: A manually curated catalogue of pathology-associated T cell receptor sequences.  Bioinformatics. 2017 Sept 15 , 33 (18):2924-2929.
  11. Zhivin O., Dassa B., Morais S., Utturkar S. M., Brown S. D., Henrissat B., Lamed R. & Bayer E. (2017). Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system.  Biotechnology for Biofuels. 2017 Sept 7 , 10 (1).
  12. Yoav S., Barak Y., Shamshoum M., Borovok I., Lamed R., Dassa B., Hadar Y., Morag E. & Bayer E. (2017). How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?.  Biotechnology for Biofuels. 2017 Sept 18 , 10 (1).
  13. Maaravi T., Leven I., Azuri I., Kronik L. & Hod O. (2017). Interlayer Potential for Homogeneous Graphene and Hexagonal Boron Nitride Systems: Reparametrization for Many-Body Dispersion Effects.  Journal of Physical Chemistry C. 2017 Oct 19 , 121 (41):22826-22835.
  14. Eliash N., Singh N. K., Thangarajan S., Sela N., Leshkowitz D., Kamer Y., Zaidman I., Rafaeli A. & Soroker V. (2017). Chemosensing of honeybee parasite, Varroa destructor: Transcriptomic analysis.  Scientific Reports. 2017 Dec 1 , 7 (1).
  15. Teper-Bamnolker P., Buskila Y., Belausov E., Wolf D., Doron-Faigenboim A., Ben-Dor S., Van der Hoorn R. A. L., Lers A. & Eshel D. (2017). Vacuolar processing enzyme activates programmed cell death in the apical meristem inducing loss of apical dominance.  Plant, Cell and Environment. 2017 Oct , 40 (10):2381-2392.
  16. Golan-Gerstl R., Elbaum Shiff Y., Moshayoff V., Schecter D., Leshkowitz D. & Reif S. (2017). Characterization and biological function of milk-derived miRNAs.  Molecular Nutrition & Food Research. 2017 Oct , 61 (10).
  17. Gurvich Y., Leshkowitz D. & Barkai N. (2017). Dual role of starvation signaling in promoting growth and recovery.  PLoS Biology. 2017 Dec , 15 (12).
  18. Gilad O., Shemer O. S., Dgany O., Krasnov T., Nevo M., Noy-Lotan S., Rabinowicz R., Amitai N., Ben-Dor S., Yaniv I., Yacobovich J. & Tamary H. (2017). Molecular diagnosis of α-thalassemia in a multiethnic population.  European Journal of Haematology. 2017 Jun 1 , 98 (6):553-562.
  19. Dassa B., Borovok I., Lombard V., Henrissat B., Lamed R., Bayer E. A. & Morais S. (2017). Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme.  Microorganisms. 2017 Nov 18 , 5 (4).
  20. Israeli-Ruimy V., Bule P., Jindou S., Dassa B., Morais S., Borovok I., Barak Y., Slutzki M., Hamberg Y., Cardoso V., Alves V. D., Najmudin S., White B. A., Flint H. J., Gilbert H. J., Lamed R., Fontes C. M. G. A. & Bayer E. (2017). Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions.  Scientific Reports. 2017 Feb 10 , 7 .