Bioinformatics: LSCF Publications

  1. Weill U., Cohen N., Fadel A., Ben-Dor S. & Schuldiner M. (2019). Protein Topology Prediction Algorithms Systematically Investigated in the Yeast Saccharomyces cerevisiae.  BioEssays. 2019 Aug , 41 (8).
  2. Lebow M. A., Schroeder M., Tsoory M., Holzman-Karniel D., Mehta D., Ben-Dor S., Gil S., Bradley B., Smith A. K., Jovanovic T., Ressler K. J., Binder E. B. & Chen A. (2019). Glucocorticoid-induced leucine zipper \u201cquantifies\u201d stressors and increases male susceptibility to PTSD.  Translational Psychiatry. 2019 Dec 1 , 9 (1).
  3. Gal H., Lysenko M., Stroganov S., Vadai E., Youssef S. A., Tzadikevitch-Geffen K., Rotkopf R., Biron-Shental T., de Bruin A., Neeman M. & Krizhanovsky V. (2019). Molecular pathways of senescence regulate placental structure and function.  EMBO Journal. 2019 Sept 16 , 38 (18).
  4. Sever L., Radomir L., Strim K., Weiner A., Shchottlender N., Lewinsky H., Barak A. F., Friedlander G., Ben-Dor S., Becker-Herman S. & Shachar I. (2019). SLAMF9 regulates pDC homeostasis and function in health and disease.  Proceedings of the National Academy of Sciences of the United States of America. 2019 Aug 13 , 116 (33):16489-16496.
  5. Phitsuwan P., Moraïs S., Dassa B., Henrissat B. & Bayer E. A. (2019). The cellulosome paradigm in an extreme alkaline environment.  Microorganisms. 2019 Sept , 7 (9).
  6. Rosenwasser S., Sheyn U., Frada M. J., Pilzer D., Rotkopf R. & Vardi A. (2019). Unmasking cellular response of a bloomforming alga to viral infection by resolving expression profiles at a single-cell level.  PLoS Pathogens. 2019, 15 (4).
  7. Paudel I., Gerbi H., Zisovich A., Sapir G., Ben-Dor S., Brumfeld V. & Klein T. (2019). Drought tolerance mechanisms and aquaporin expression of wild vs. cultivated pear tree species in the field.  Environmental and Experimental Botany. 2019 Nov , 167 .
  8. Bahat A., Lahav O., Plotnikov A., Leshkowitz D. & Dikstein R. (2019). Targeting Spt5-Pol II by Small-Molecule Inhibitors Uncouples Distinct Activities and Reveals Additional Regulatory Roles.  Molecular Cell. 2019 Nov 21 , 76 (4):617-631.
  9. Lapidoth G., Parker J., Prilusky J. & Fleishman S. J. (2019). AbPredict 2: a server for accurate and unstrained structure prediction of antibody variable domains.  Bioinformatics. 2019 May 1 , 35 (9):1591-1593.
  10. Eyal S., Kult S., Rubin S., Krief S., Felsenthal N., Pineault K. M., Leshkowitz D., Salame T., Addadi Y., Wellik D. M. & Zelzer E. (2019). Bone morphology is regulated modularly by global and regional genetic programs.  Development. 2019 Jul 26 , 146 (14).
  11. Ben-David Y., Dassa B., Bensoussan L., Bayer E. A. & Moraïs S. (2018). Methods for discovery of novel cellulosomal cellulases using genomics and biochemical tools.  . 2018 Jun , :67-84.
  12. Polturak G., Heinig U., Grossman N., Battat M., Leshkowitz D., Malitsky S., Rogachev I. & Aharoni A. (2018). Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa.  Molecular Plant. 2018 Jan 8 , 11 (1):189-204.
  13. Feigelson S. W., Solomon A., Biram A., Hatzav M., Lichtenstein M., Regev O., Kozlovski S., Varol D., Curato C., Leshkowitz D., Jung S., Shulman Z. & Alon R. (2018). ICAMs Are Not Obligatory for Functional Immune Synapses between Naive CD4 T Cells and Lymph Node DCs.  Cell Reports. 2018 Jan 23 , 22 (4):849-859.
  14. Azuri I., Hirsch A., Reilly A. M., Tkatchenko A., Kendler S., Hod O. & Kronik L. (2018). Terahertz spectroscopy of 2,4,6-trinitrotoluene molecular solids from first principles.  Beilstein Journal of Organic Chemistry. 2018 Feb 9 , 14 :381-388.
  15. Schroeder M., Jakovcevski M., Polacheck T., Drori Y., Luoni A., Röh S., Zaugg J., Ben-Dor S., Albrecht C. & Chen A. (2018). Placental miR-340 mediates vulnerability to activity based anorexia in mice.  Nature Communications. 2018 Dec 1 , 9 (1).
  16. Kabakova I. V., Azuri I., Chen Z., Nayak P. K., Snaith H. J., Kronik L., Paterson C., Bakulin A. A. & Egger D. A. (2018). The effect of ionic composition on acoustic phonon speeds in hybrid perovskites from Brillouin spectroscopy and density functional theory.  Journal of Materials Chemistry C. 2018, 6 (15):3861-3868.
  17. Kfir S., Basavaraja R., Wigoda N., Ben-Dor S., Orr I. & Meidan R. (2018). Genomic profiling of bovine corpus luteum maturation.  PLoS ONE. 2018 Mar , 13 (3).
  18. Kfir S., Basavaraja R., Wigoda N., Ben-Dor S., Orr I. & Meidan R. (2018). Genomic profiling of bovine corpus luteum maturation.  PLoS ONE. 2018 Mar , 13 (3).
  19. Tidhar R., Zelnik I. D., Volpert G., Ben-Dor S., Kelly S., Merrill A. H. & Futerman A. H. (2018). Eleven residues determine the acyl chain specificity of ceramide synthases.  Journal of Biological Chemistry. 2018 Jun 22 , 293 (25):9912-9921.
  20. Polonsky M., Rimer J., Kern-Perets A., Zaretsky I., Miller S., Bornstein C., David E., Kopelman N. M., Stelzer G., Porat Z., Chain B. & Friedman N. (2018). Induction of CD4 T cell memory by local cellular collectivity.  Science. 2018 Jun 15 , 360 (6394).