Bioinformatics: LSCF Publications

  1. Leshkowitz D., Feldmesser E., Friedlander G., Jona G., Ainbinder E., Parmet Y. & Horn-Saban S. (2016). Using synthetic mouse spike-in transcripts to evaluate RNA-seq analysis tools.  PLoS ONE. 2016 Apr , 11 (4).
  2. Klein A. D., Ferreira N., Ben-Dor S., Duan J., Hardy J., Cox T. M., Merrill A. H. J. & Futerman A. H. (2016). Identification of Modifier Genes in a Mouse Model of Gaucher Disease.  Cell Reports. 2016 Sept 6 , 16 (10):2546-2553.
  3. Vitner E. B., Farfel-Becker T., Ferreira N. S., Leshkowitz D., Sharma P., Lang K. S. & Futerman A. H. (2016). Induction of the type I interferon response in neurological forms of Gaucher disease.  Journal of Neuroinflammation. 2016 May 12 , 13 (1).
  4. Oren R., Addadi Y., Haziza L. N., Dafni H., Rotkopf R., Meir G., Fishman A. & Neeman M. (2016). Fibroblast recruitment as a tool for ovarian cancer detection and targeted therapy.  International Journal of Cancer. 2016 Oct 15 , 139 (8):1788-1798.
  5. Redmond S. A., Mei F., Eshed Eisenbach E. Y., Osso L. A., Leshkowitz D., Shen Y. A., Kay J. N., Aurrand-Lions M., Lyons D. A., Peles E. & Chan J. R. (2016). Somatodendritic Expression of JAM2 Inhibits Oligodendrocyte Myelination.  Neuron. 2016 Aug 17 , 91 (4):824-836.
  6. Leven I., Maaravi T., Azuri I., Kronik L. & Hod O. (2016). Interlayer Potential for Graphene/h-BN Heterostructures.  Journal of Chemical Theory and Computation. 2016 Jun 14 , 12 (6):2896-2905.
  7. Goldenzweig A., Goldsmith M., Hill S. E., Gertman O., Laurino P., Ashani Y., Dym O., Unger T., Albeck S., Prilusky J., Lieberman R. L., Aharoni A., Silman I., Sussman J., Tawfik D. & Fleishman S. J. (2016). Automated Structure- and Sequence-Based Design of Proteins for High Bacterial Expression and Stability.  Molecular Cell. 2016 Jul 21 , 63 (2):337-346.
  8. Malitsky S., Ziv C., Rosenwasser S., Zheng S., Schatz D., Porat Z., Ben-Dor S., Aharoni A. & Vardi A. (2016). Viral infection of the marine alga Emiliania huxleyi triggers lipidome remodeling and induces the production of highly saturated triacylglycerol.  New Phytologist. 2016 Apr , 210 (1):88-96.
  9. Itkin M., Davidovich-Rikanati R., Cohen S., Portnoy V., Doron-Faigenboim A., Oren E., Freilich S., Tzuri G., Baranes N., Shen S., Petreikov M., Sertchook R., Ben-Dor S., Gottlieb H., Hernandez A., Nelson D., Paris H., Tadmor Y., Burger Y., Lewinsohn E., Katzir N. & Schaffer A. (2016). The biosynthetic pathway of the nonsugar, high-intensity sweetener mogroside V from Siraitia grosvenorii.  Proceedings of the National Academy of Sciences of the United States of America. 2016 Nov 22 , 113 (47):E7619-E7628.
  10. Ziv C., Malitsky S., Othman A., Ben-Dor S., Wei Y., Zheng S., Aharoni A., Hornemann T. & Vardi A. (2016). Viral serine palmitoyltransferase induces metabolic switch in sphingolipid biosynthesis and is required for infection of a marine alga.  Proceedings of the National Academy of Sciences of the United States of America. 2016 Mar 29 , 113 (13):E1907-E1916.
  11. Sagiv A., Burton D., Moshayev Z., Vadai E., Wensveen F., Ben-Dor S., Golani O., Polic B. & Krizhanovsky V. (2016). NKG2D ligands mediate immunosurveillance of senescent cells.  AGING-US. 2016, 8 (2):328-344.
  12. Stelzer G., Rosen N., Plaschkes I., Zimmerman S., Twik M., Fishilevich S., Stein T. I., Nudel R., Lieder I., Mazor Y., Kaplan S., Dahary D., Warshawsky D., Guan-Golan Y., Kohn A., Rappaport N., Safran M. & Lancet D. (2016). The GeneCards suite: From gene data mining to disease genome sequence analyses.  Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]. 2016, 2016 :1.30.1-1.30.33.
  13. Cohen Y., Dafni H., Avni R., Fellus L., Bochner F., Rotkopf R., Raz T., Benjamin L. E., Walsh K. & Neeman M. (2016). Genetic and pharmacological modulation of Akt1 for improving ovarian graft revascularization in a mouse model.  Biology of Reproduction. 2016 Jan 1 , 94 (1).
  14. Stelzer G., Plaschkes I., Oz Levi L. D., Alkelai A., Olender T., Zimmerman S., Twik M., Belinky F., Fishilevich S., Nudel R., Guan-Golan Y., Warshawsky D., Dahary D., Kohn A., Mazor Y., Kaplan S., Stein T. I., Baris H. N., Rappaport N., Safran M. & Lancet D. (2016). VarElect: The phenotype-based variation prioritizer of the GeneCards Suite.  BMC Genomics. 2016 Jun 23 , 17 .
  15. Aylon Y., Gershoni A., Rotkopf R., Biton I. E., Porat Z., Koh A. P., Sun X., Lee Y., Fiel M., Hoshida Y., Friedman S. L., Johnson R. L. & Oren M. (2016). The LATS2 tumor suppressor inhibits SREBP and suppresses hepatic cholesterol accumulation.  GENES & DEVELOPMENT. 2016 Apr 1 , 30 (7):786-797.
  16. Ben-Ari Fuchs S., Lieder I., Stelzer G., Mazor Y., Buzhor E., Kaplan S., Bogoch Y., Plaschkes I., Shitrit A., Rappaport N., Kohn A., Edgar R., Shenhav L., Safran M., Lancet D., Guan-Golan Y., Warshawsky D. & Shtrichman R. (2016). GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing, RNAseq and Microarray Data.  OMICS A Journal of Integrative Biology. 2016 Mar , 20 (3):139-151.
  17. Assaf E., Weinstein J. J., Prilusky J. & Fleishman S. (2016). Interplay between hydrophobicity and the positiveinside rule in determining membrane-protein topology.  Proceedings of the National Academy of Sciences of the United States of America. 2016 Sept 13 , 113 (37):10340-10345.
  18. Sheyn U., Rosenwasser S., Ben-Dor S., Porat Z. & Vardi A. (2016). Modulation of host ROS metabolism is essential for viral infection of a bloom-forming coccolithophore in the ocean.  ISME Journal. 2016 Jul 1 , 10 (7):1742-1754.
  19. Elharar Y., Roth Z., Hecht N., Rotkopf R., Khalaila I. & Gur E. (2016). Posttranslational regulation of coordinated enzyme activities in the Pup-proteasome system.  Proceedings of the National Academy of Sciences of the United States of America. 2016 Mar 22 , 113 (12):E1605-E1614.
  20. Ohad S., Ben-Dor S., Prilusky J., Kravitz V., Dassa B., Chalifa-Caspi T., Kashi Y. & Rorman E. (2016). The development of a novel qPCR assay-set for identifying fecal contamination originating from domestic fowls and waterfowl in Israel.  Frontiers in Microbiology. 2016 Feb 17 , 7 (FEB).