Bioinformatics: LSCF Publications

  1. Malitsky S., Ziv C., Rosenwasser S., Zheng S., Schatz D., Porat Z., Ben-Dor S., Aharoni A. & Vardi A. (2016). Viral infection of the marine alga Emiliania huxleyi triggers lipidome remodeling and induces the production of highly saturated triacylglycerol.  New Phytologist. 2016 Apr , 210 (1):88-96.
  2. Itkin M., Davidovich-Rikanati R., Cohen S., Portnoy V., Doron-Faigenboim A., Oren E., Freilich S., Tzuri G., Baranes N., Shen S., Petreikov M., Sertchook R., Ben-Dor S., Gottlieb H., Hernandez A., Nelson D., Paris H., Tadmor Y., Burger Y., Lewinsohn E., Katzir N. & Schaffer A. (2016). The biosynthetic pathway of the nonsugar, high-intensity sweetener mogroside V from Siraitia grosvenorii.  Proceedings of the National Academy of Sciences of the United States of America. 2016 Nov 22 , 113 (47):E7619-E7628.
  3. Ziv C., Malitsky S., Othman A., Ben-Dor S., Wei Y., Zheng S., Aharoni A., Hornemann T. & Vardi A. (2016). Viral serine palmitoyltransferase induces metabolic switch in sphingolipid biosynthesis and is required for infection of a marine alga.  Proceedings of the National Academy of Sciences of the United States of America. 2016 Mar 29 , 113 (13):E1907-E1916.
  4. Sagiv A., Burton D., Moshayev Z., Vadai E., Wensveen F., Ben-Dor S., Golani O., Polic B. & Krizhanovsky V. (2016). NKG2D ligands mediate immunosurveillance of senescent cells.  AGING-US. 2016, 8 (2):328-344.
  5. Stelzer G., Rosen N., Plaschkes I., Zimmerman S., Twik M., Fishilevich S., Stein T. I., Nudel R., Lieder I., Mazor Y., Kaplan S., Dahary D., Warshawsky D., Guan-Golan Y., Kohn A., Rappaport N., Safran M. & Lancet D. (2016). The GeneCards suite: From gene data mining to disease genome sequence analyses.  Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]. 2016, 2016 :1.30.1-1.30.33.
  6. Cohen Y., Dafni H., Avni R., Fellus L., Bochner F., Rotkopf R., Raz T., Benjamin L. E., Walsh K. & Neeman M. (2016). Genetic and pharmacological modulation of Akt1 for improving ovarian graft revascularization in a mouse model.  Biology of Reproduction. 2016 Jan 1 , 94 (1).
  7. Stelzer G., Plaschkes I., Oz Levi L. D., Alkelai A., Olender T., Zimmerman S., Twik M., Belinky F., Fishilevich S., Nudel R., Guan-Golan Y., Warshawsky D., Dahary D., Kohn A., Mazor Y., Kaplan S., Stein T. I., Baris H. N., Rappaport N., Safran M. & Lancet D. (2016). VarElect: The phenotype-based variation prioritizer of the GeneCards Suite.  BMC Genomics. 2016 Jun 23 , 17 .
  8. Aylon Y., Gershoni A., Rotkopf R., Biton I. E., Porat Z., Koh A. P., Sun X., Lee Y., Fiel M., Hoshida Y., Friedman S. L., Johnson R. L. & Oren M. (2016). The LATS2 tumor suppressor inhibits SREBP and suppresses hepatic cholesterol accumulation.  GENES & DEVELOPMENT. 2016 Apr 1 , 30 (7):786-797.
  9. Ben-Ari Fuchs S., Lieder I., Stelzer G., Mazor Y., Buzhor E., Kaplan S., Bogoch Y., Plaschkes I., Shitrit A., Rappaport N., Kohn A., Edgar R., Shenhav L., Safran M., Lancet D., Guan-Golan Y., Warshawsky D. & Shtrichman R. (2016). GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing, RNAseq and Microarray Data.  OMICS A Journal of Integrative Biology. 2016 Mar , 20 (3):139-151.
  10. Assaf E., Weinstein J. J., Prilusky J. & Fleishman S. (2016). Interplay between hydrophobicity and the positiveinside rule in determining membrane-protein topology.  Proceedings of the National Academy of Sciences of the United States of America. 2016 Sept 13 , 113 (37):10340-10345.
  11. Sheyn U., Rosenwasser S., Ben-Dor S., Porat Z. & Vardi A. (2016). Modulation of host ROS metabolism is essential for viral infection of a bloom-forming coccolithophore in the ocean.  ISME Journal. 2016 Jul 1 , 10 (7):1742-1754.
  12. Elharar Y., Roth Z., Hecht N., Rotkopf R., Khalaila I. & Gur E. (2016). Posttranslational regulation of coordinated enzyme activities in the Pup-proteasome system.  Proceedings of the National Academy of Sciences of the United States of America. 2016 Mar 22 , 113 (12):E1605-E1614.
  13. Ohad S., Ben-Dor S., Prilusky J., Kravitz V., Dassa B., Chalifa-Caspi T., Kashi Y. & Rorman E. (2016). The development of a novel qPCR assay-set for identifying fecal contamination originating from domestic fowls and waterfowl in Israel.  Frontiers in Microbiology. 2016 Feb 17 , 7 (FEB).
  14. Ohad S., Ben-Dor S., Prilusky J., Kravitz V., Dassa B., Chalifa-Caspi T., Kashi Y. & Rorman E. (2016). The development of a novel qPCR assay-set for identifying fecal contamination originating from domestic fowls and waterfowl in Israel.  Frontiers in Microbiology. 2016 Feb 17 , 7 (FEB).
  15. Ohad S., Ben-Dor S., Prilusky J., Kravitz V., Dassa B., Chalifa-Caspi T., Kashi Y. & Rorman E. (2016). The development of a novel qPCR assay-set for identifying fecal contamination originating from domestic fowls and waterfowl in Israel.  Frontiers in Microbiology. 2016 Feb 17 , 7 (FEB).
  16. Yofe I., Weill U., Meurer M., Chuartzman S., Zalckvar E., Goldman O., Ben-Dor S., Schutze C., Wiedemann N., Knop M., Khmelinskii A. & Schuldiner M. (2016). One library to make them all: Streamlining the creation of yeast libraries via a SWAp-Tag strategy.  Nature Methods. 2016 Mar 30 , 13 (4):371-378.
  17. Davidi L., Levin Y., Ben-Dor S. & Pick U. (2015). Proteome analysis of cytoplasmatic and plastidic β-carotene lipid droplets in Dunaliella bardawil1[OPEN].  Plant Physiology. 2015 Jan 1 , 167 (1):60-79.
  18. Zahavi T., Stelzer G., Strauss L., Salmon A. Y. & Salmon-Divon M. (2015). VennBLAST-Whole transcriptome comparison and visualization tool.  Genomics. 2015 Mar 1 , 105 (3):131-136.
  19. Sharoni S., Trainic M., Schatz D., Lehahn Y., Flores M. J., Bidle K. D., Ben-Dor S., Rudich Y., Koren I. & Vardi A. (2015). Infection of phytoplankton by aerosolized marine viruses.  Proceedings of the National Academy of Sciences of the United States of America. 2015 May 26 , 112 (21):6643-6647.
  20. Shemi A., Ben-Dor S. & Vardi A. (2015). Elucidating the composition and conservation of the autophagy pathway in photosynthetic eukaryotes.  Autophagy. 2015, 11 (4):701-715.