Bioinformatics: LSCF Publications

  1. Ohad S., Ben-Dor S., Prilusky J., Kravitz V., Dassa B., Chalifa-Caspi T., Kashi Y. & Rorman E. (2016). The development of a novel qPCR assay-set for identifying fecal contamination originating from domestic fowls and waterfowl in Israel.  Frontiers in Microbiology. 2016 Feb 17 , 7 (FEB).
  2. Ohad S., Ben-Dor S., Prilusky J., Kravitz V., Dassa B., Chalifa-Caspi T., Kashi Y. & Rorman E. (2016). The development of a novel qPCR assay-set for identifying fecal contamination originating from domestic fowls and waterfowl in Israel.  Frontiers in Microbiology. 2016 Feb 17 , 7 (FEB).
  3. Yofe I., Weill U., Meurer M., Chuartzman S., Zalckvar E., Goldman O., Ben-Dor S., Schutze C., Wiedemann N., Knop M., Khmelinskii A. & Schuldiner M. (2016). One library to make them all: Streamlining the creation of yeast libraries via a SWAp-Tag strategy.  Nature Methods. 2016 Mar 30 , 13 (4):371-378.
  4. Davidi L., Levin Y., Ben-Dor S. & Pick U. (2015). Proteome analysis of cytoplasmatic and plastidic β-carotene lipid droplets in Dunaliella bardawil1[OPEN].  Plant Physiology. 2015 Jan 1 , 167 (1):60-79.
  5. Zahavi T., Stelzer G., Strauss L., Salmon A. Y. & Salmon-Divon M. (2015). VennBLAST-Whole transcriptome comparison and visualization tool.  Genomics. 2015 Mar 1 , 105 (3):131-136.
  6. Sharoni S., Trainic M., Schatz D., Lehahn Y., Flores M. J., Bidle K. D., Ben-Dor S., Rudich Y., Koren I. & Vardi A. (2015). Infection of phytoplankton by aerosolized marine viruses.  Proceedings of the National Academy of Sciences of the United States of America. 2015 May 26 , 112 (21):6643-6647.
  7. Shemi A., Ben-Dor S. & Vardi A. (2015). Elucidating the composition and conservation of the autophagy pathway in photosynthetic eukaryotes.  Autophagy. 2015, 11 (4):701-715.
  8. Grinberg I., Yin G., Borovok I., Miller M., Yeoman C., Dassa B., Yu Z., Mizrahi I., Flint H., Bayer E., White B. & Lamed R. (2015). Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome.  FEMS Microbiology Letters. 2015 Feb 9 , 362 (3):1-10.
  9. Harari D., Orr I., Rotkopf R., Baranzini S. & Schreiber G. (2015). A robust type I interferon gene signature fromblood RNA defines quantitative but not qualitative differences between three major IFNβ drugs in the treatment of multiple sclerosis.  Human Molecular Genetics. 2015 Jun 1 , 24 (11):3192-3205.
  10. Rozen S., Fuzesi-Levi M. G., Ben-Nissan G., Mizrachi L., Gabashvili A., Levin Y., Ben-Dor S., Eisenstein M. & Sharon M. (2015). CSNAP Is a Stoichiometric Subunit of the COP9 Signalosome.  Cell Reports. 2015 Oct 20 , 13 (3):585-598.
  11. Ben David D. Y., Dassa B., Borovok I., Lamed R., Koropatkin N. M., Martens E. C., White B. A., Bernalier-Donadille A., Duncan S. H., Flint H. J., Bayer E. & Morais S. (2015). Ruminococcal cellulosome systems from rumen to human.  Environmental Microbiology. 2015 Sept , 17 (9):3407-3426.
  12. Azuri I., Meirzadeh E., Ehre D., Cohen S., Rappe A. M., Lahav M., Lubomirsky I. & Kronik L. (2015). Unusually Large Young's Moduli of Amino Acid Molecular Crystals.  Angewandte Chemie (International ed. in English). 2015 Nov 9 , 54 (46):13566-13570.
  13. Ze X., Ben David D. Y., Laverde-Gomez J. A., Dassa B., Sheridan P. O., Duncan S. H., Louis P., Henrissat B., Juge N., Koropatkin N. M., Bayer E. & Flint H. J. (2015). Unique organization of extracellular amylases into amylosomes in the resistant starch-utilizing human colonic firmicutes bacterium ruminococcus bromii.  mBio. 2015 Sept 29 , 6 (5).
  14. Dassa B., Utturkar S., Hurt R. A., Klingeman D. M., Keller M., Xu J., Harish Kumar Reddy Y., Borovok I., Grinberg I. R., Lamed R., Zhivin O., Bayer E. A. & Brown S. D. (2015). Near-complete genome sequence of the cellulolytic bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603.  Genome Announcements. 2015 Sept 24 , 3 (5).
  15. Belinky F., Nativ N., Stelzer G., Zimmerman S., Stein T. I., Safran M. & Lancet D. (2015). PathCards: Multi-source consolidation of human biological pathways.  Database : the journal of biological databases and curation. 2015, 2015 .
  16. Ram D., Leshkowitz D., Gonzalez D., Forer R., Levy I., Chowers M., Lorber M., Hindiyeh M., Mendelson E. & Mor O. (2015). Evaluation of GS Junior and MiSeq next-generation sequencing technologies as an alternative to Trugene population sequencing in the clinical HIV laboratory.  Journal of Virological Methods. 2015 Feb , 212 :12-16.
  17. Dekel Y., Machluf Y., Ben-Dor S., Yifa O., Stoler A., Ben-Shlomo I. & Bercovich D. (2015). Dispersal of an ancient retroposon in the TP53 promoter of Bovidae: Phylogeny, novel mechanisms, and potential implications for cow milk persistency.  BMC Genomics. 2015 Feb 5 , 16 (1).
  18. Alcolombri U., Ben-Dor S., Feldmesser E., Levin Y., Tawfik D. & Vardi A. (2015). Identification of the algal dimethyl sulfide-releasing enzyme: A missing link in the marine sulfur cycle.  Science. 2015 Jun 26 , 348 (6242):1466-1469.
  19. Arafeh R., Qutob N., Emmanuel R., Keren-Paz A., Madore J., Elkahloun A., Wilmott J. S., Gartner J. J., Di Pizio A., Winograd-Katz S., Sindiri S., Rotkopf R., Dutton-Regester K., Johansson P., Pritchard A. L., Waddell N., Hill V. K., Lin J. C., Hevroni Y., Rosenberg S. A., Khan J., Ben-Dor S., Niv M. Y., Ulitsky I., Mann G. J., Scolyer R. A., Hayward N. K. & Samuels Y. (2015). Recurrent inactivating RASA2 mutations in melanoma.  Nature Genetics. 2015 Dec , 47 (12):1408-1410.
  20. Arafeh R., Qutob N., Emmanuel R., Keren-Paz A., Madore J., Elkahloun A., Wilmott J. S., Gartner J. J., Di Pizio A., Winograd-Katz S., Sindiri S., Rotkopf R., Dutton-Regester K., Johansson P., Pritchard A. L., Waddell N., Hill V. K., Lin J. C., Hevroni Y., Rosenberg S. A., Khan J., Ben-Dor S., Niv M. Y., Ulitsky I., Mann G. J., Scolyer R. A., Hayward N. K. & Samuels Y. (2015). Recurrent inactivating RASA2 mutations in melanoma.  Nature Genetics. 2015 Dec , 47 (12):1408-1410.