Bioinformatics: LSCF Publications

  1. Nicenboim J., Malkinson G., Lupo T., Asaf L., Sela Y., Mayseless O., Gibbs-Bar L., Senderovich N., Hashimshony T., Shin M. S., Jerafi-Vider A., Avraham-Davidi I., Krupalnik V., Hofi R., Almog G., Astin J. W., Golani O., Ben-Dor S., Crosier P. S., Herzog W., Lawson N. D., Hanna J. H., Yanai I. & Yaniv K. (2015). Lymphatic vessels arise from specialized angioblasts within a venous niche.  Nature. 2015 Jun 4 , 522 (7554):56-61.
  2. Fattal I., Shental N., Ben-Dor S., Molad Y., Gabrielli A., Pokroy-Shapira E., Oren S., Livneh A., Langevitz P., Zandman-Goddard G., Sarig O., Margalit R., Gafter U., Domany E. & Cohen I. R. (2015). Guanine polynucleotides are self-antigens for human natural autoantibodies and are significantly reduced in the human genome.  Immunology. 2015 Nov , 146 (3):401-410.
  3. Minis A., Dahary D., Manor O., Leshkowitz D., Pilpel Y. & Yaron A. (2014). Subcellular transcriptomics-Dissection of the mRNA composition in the axonal compartment of sensory neurons.  Developmental Neurobiology. 2014 Mar , 74 (3):365-381.
  4. Azuri I., Adler-Abramovich L., Gazit E., Hod O. & Kronik L. (2014). Why are diphenylalanine-based peptide nanostructures so rigid? Insights from first principles calculations.  Journal of the American Chemical Society. 2014 Jan 22 , 136 (3):963-969.
  5. Cohen S., Itkin M., Yeselson Y., Tzuri G., Portnoy V., Harel-Baja R., Lev S., Sa'ar U., Davidovitz-Rikanati R., Baranes N., Bar E., Wolf D., Petreikov M., Shen S., Ben-Dor S., Rogachev I., Aharoni A., Ast T., Schuldiner M., Belausov E., Eshed R., Ophir R., Sherman A., Frei B., Neuhaus H. E., Xu Y., Fei Z., Giovannoni J., Lewinsohn E., Tadmor Y., Paris H. S., Katzir N., Burger Y. & Schaffer A. A. (2014). The PH gene determines fruit acidity and contributes to the evolution of sweet melons.  Nature Communications. 2014 Jun 5 , 5 .
  6. Dassa B., Borovok I., Ruimy-Israeli V., Lamed R., Flint H. J., Duncan S. H., Henrissat B., Coutinho P., Morrison M., Mosoni P., Yeoman C. J., White B. A. & Bayer E. (2014). Rumen cellulosomics: Divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains.  PLoS ONE. 2014 Jul 3 , 9 (7).
  7. Feldmesser E., Rosenwasser S., Vardi A. & Ben-Dor S. (2014). Improving transcriptome construction in non-model organisms: Integrating manual and automated gene definition in Emiliania huxleyi.  BMC Genomics. 2014 Feb 22 , 15 (1).
  8. Levanon D., Negreanu V., Lotem J., Bone K. R., Brenner O., Leshkowitz D. & Groner Y. (2014). Transcription factor Runx3 regulates interleukin-15-dependent natural Killer cell activation.  Molecular and Cellular Biology. 2014 Mar , 34 (6):1158-1169.
  9. Leven I., Azuri I., Kronik L. & Hod O. (2014). Inter-layer potential for hexagonal boron nitride.  Journal of Chemical Physics. 2014 Mar 14 , 140 (10).
  10. Kotkamp K., Kur E., Wendik B., Polok B. K., Ben-Dor S., Onichtchouk D. & Driever W. (2014). Pou5f1/Oct4 promotes cell survival via direct activation of mych expression during zebrafish gastrulation.  PLoS ONE. 2014 Mar 18 , 9 (3).
  11. Hirsch A., Azuri I., Addadi L., Weiner S., Yang K., Curtarolo S. & Kronik L. (2014). Infrared absorption spectrum of brushite from first principles.  Chemistry of Materials. 2014 May 13 , 26 (9):2934-2942.
  12. Frada M. J., Schatz D., Farstey V., Ossolinski J. E., Sabanay H., Ben-Dor S., Koren I. & Vardi A. (2014). Zooplankton may serve as transmission vectors for viruses infecting algal blooms in the ocean.  Current Biology. 2014 Nov 3 , 24 (21):2592-2597.
  13. Ma X., Shatil-Cohen A., Ben-Dor S., Wigoda N., Perera I. Y., Im Y. J., Diminshtein S., Yu L., Boss W. F., Moshelion M. & Moran N. (2014). Do phosphoinositides regulate membrane water permeability of tobacco protoplasts by enhancing the aquaporin pathway?.  Planta. 2014 Mar , 241 (3):741-755.
  14. Ma X., Shatil-Cohen A., Ben-Dor S., Wigoda N., Perera I. Y., Im Y. J., Diminshtein S., Yu L., Boss W. F., Moshelion M. & Moran N. (2014). Do phosphoinositides regulate membrane water permeability of tobacco protoplasts by enhancing the aquaporin pathway?.  Planta. 2014 Mar , 241 (3):741-755.
  15. Hamberg Y., Ruimy-Israeli V., Dassa B., Barak Y., Lamed R., Cameron K., Fontes C., Bayer E. & Fried D. (2014). Elaborate cellulosome architecture of Acetivibrio cellulolyticus revealed by selective screening of cohesin-dockerin interactions.  PeerJ. 2014, 2014 (1).
  16. Shalev M., Aviram R., Adamovich Y., Kraut-Cohen J., Shamia T., Ben-Dor S., Golik M. & Asher G. (2014). The PXDLS linear motif regulates circadian rhythmicity through protein-protein interactions.  Nucleic Acids Research. 2014 Oct 29 , 42 (19):11879-11890.
  17. Shoshani O., Ravid O., Massalha H., Aharonov A., Ovadya Y., Pevsner-Fischer M., Leshkowitz D. & Zipori D. (2014). Cell isolation induces fate changes of bone marrow mesenchymal cells leading to loss or alternatively to acquisition of new differentiation potentials.  Stem Cells. 2014 Aug , 32 (8):2008-2020.
  18. Artzi L., Dassa B., Borovok I., Shamshoum M., Lamed R. & Bayer E. A. (2014). Cellulosomics of the cellulolytic thermophile Clostridium clariflavum.  Biotechnology for Biofuels. 2014 Jul 1 , 7 (1).
  19. Rappaport N., Twik M., Nativ N., Stelzer G., Bahir I., Stein T. I., Safran M. & Lancet D. (2014). MalaCards: A Comprehensive automatically-mined Database of human diseases.  Current Protocols in Bioinformatics. 2014 Sept 8 , 2014 :1.24.1-1.24.19.
  20. Schatz D., Shemi A., Rosenwasser S., Sabanay H., Wolf S. G., Ben-Dor S. & Vardi A. (2014). Hijacking of an autophagy-like process is critical for the life cycle of a DNA virus infecting oceanic algal blooms.  NEW PHYTOLOGIST. 2014 Dec 1 , 204 (4):854-863.