Bioinformatics: LSCF Publications

  1. Rosenwasser S., Mausz M. A., Schatz D., Sheyn U., Malitsky S., Aharoni A., Weinstock E., Tzfadia O., Ben-Dor S., Feldmesser E., Pohnert G. & Vardi A. (2014). Rewiring host lipid metabolism by large viruses determines the fate of Emiliania huxleyi, a bloom-forming alga in the ocean.  Plant Cell. 2014 Jul , 26 (6):2689-2707.
  2. Leshkowitz D., Horn-Saban S., Parmet Y. & Feldmesser E. (2013). Differences in microRNA detection levels are technology and sequence dependent.  Rna-A Publication Of The Rna Society. 2013 Apr , 19 (4):527-538.
  3. Leviatan N., Alkan N., Leshkowitz D. & Fluhr R. (2013). Genome-Wide Survey of Cold Stress Regulated Alternative Splicing in Arabidopsis thaliana with Tiling Microarray.  PLoS ONE. 2013 Jun 11 , 8 (6).
  4. Limor-Waisberg K., Ben-Dor S. & Fass D. (2013). Diversification of Quiescin sulfhydryl oxidase in a preserved framework for redox relay.  BMC Evolutionary Biology. 2013, 13 (1).
  5. Lotem J., Levanon D., Negreanu V., Leshkowitz D., Friedlander G. & Groner Y. (2013). Runx3-mediated transcriptional program in cytotoxic lymphocytes.  PLoS ONE. 2013 Nov 13 , 8 (11).
  6. Dicken J., Mildner A., Leshkowitz D., Touw I. P., Hantisteanu S., Groner Y. & Jung S. (2013). Transcriptional Reprogramming of CD11b+Esamhi Dendritic Cell Identity and Function by Loss of Runx3.  PLoS ONE. 2013 Oct 15 , 8 (10).
  7. Prilusky J. & Sussman J. L. (2013). Guest editorial: Databases and bioinformatics tools.  Israel Journal of Chemistry. 2013 Apr , 53 (3-4):143.
  8. Hanson R. M., Prilusky J., Renjian Z., Nakane T. & Sussman J. L. (2013). JSmol and the next-generation web-based representation of 3D molecular structure as applied to proteopedia.  Israel Journal of Chemistry. 2013 Apr , 53 (3-4):207-216.
  9. Tzarfati R., Ben-Dor S., Sela I. & Goldschmidt E. E. (2013). Graft-induced Changes in MicroRNA Expression Patterns in Citrus Leaf Petioles.  The Open Plant Science Journal. 2013 May 4 , 7 :17-23.
  10. Belinky F., Bahir I., Stelzer G., Zimmerman S., Rosen N., Nativ N., Dalah I., Stein T. I., Rappaport N., Mituyama T., Safran M. & Lancet D. (2013). Non-redundant compendium of human ncRNA genes in GeneCards.  Bioinformatics. 2013 Jan 15 , 29 (2):255-261.
  11. Ben Ami A. O., Friedman D., Leshkowitz D., Goldenberg D., Orlovsky K., Pencovich N., Lotem J., Tanay A. & Groner Y. (2013). Addiction of t(8;21) and inv(16) Acute Myeloid Leukemia to Native RUNX1.  Cell Reports. 2013 Sept 26 , 4 (6):1131-1143.
  12. Shi J., Adato A., Alkan N., He Y., Lashbrooke J., Matas A. J., Meir S., Malitsky S., Isaacson T., Prusky D., Leshkowitz D., Schreiber L., Granell A. R., Widemann E., Grausem B., Pinot F., Rose J. K. C., Rogachev I. & Rothan C. (2013). The tomato SlSHINE3 transcription factor regulates fruit cuticle formation and epidermal patterning.  NEW PHYTOLOGIST. 2013 Jan , 197 (2):468-480.
  13. Slutzki M., Jobby M. K., Chitayat S., Karpol A., Dassa B., Barak Y., Lamed R., Smith S. P. & Bayer E. A. (2013). Intramolecular clasp of the cellulosomal Ruminococcus flavefaciens ScaA dockerin module confers structural stability.  FEBS Open Bio. 2013, 3 :398-.
  14. Sorci M., Dassa B., Liu H., Anand G., Dutta A. K., Pietrokovski S., Belfort M. & Belfort G. (2013). Oriented covalent immobilization of antibodies for measurement of intermolecular binding forces between zipper-like contact surfaces of split inteins.  Analytical Chemistry. 2013 Jun 18 , 85 (12):6080-6088.
  15. Prilusky J., Decatur W. & Martz E. (2013). Publishing in proteopedia: The guide.  . 2013 Feb 21 , :277-295.
  16. Zepeda V., Dassa B., Borovok I., Lamed R., Bayer E. A. & Cate J. H. (2013). Draft genome sequence of the cellulolytic bacterium Clostridium papyrosolvens C7 (ATCC 700395).  Genome Announcements. 2013 Sept 12 , 1 (5).
  17. Rappaport N., Nativ N., Stelzer G., Twik M., Guan-Golan Y., Stein T. I., Bahir I., Belinky F., Morrey C. P., Safran M. & Lancet D. (2013). MalaCards: An integrated compendium for diseases and their annotation.  Database-The Journal Of Biological Databases And Curation. 2013, 2013 .
  18. Olender T., Safran M., Edgar R., Stelzer G., Nativ N., Rosen N., Shtrichman R., Mazor Y., West M. D., Keydar I., Rappaport N., Belinky F., Warshawsky D. & Lancet D. (2013). An overview of synergistic data tools for biological scrutiny.  Israel Journal of Chemistry. 2013 Apr , 53 (3-4):185-198.
  19. Tidhar R., Ben-Dor S., Wang E., Kelly S., Merrill A. H. J. & Futerman A. H. (2012). Acyl chain specificity of ceramide synthases is determined within a region of 150 residues in the tram-lag-CLN8 (TLC) domain.  Journal of Biological Chemistry. 2012 Jan 27 , 287 (5):3197-3206.
  20. Tsvetkov P., Myers N., Moscovitz O., Sharon M., Prilusky J. & Shaul Y. (2012). Thermo-resistant intrinsically disordered proteins are efficient 20S proteasome substrates.  Molecular BioSystems. 2012 Jan , 8 (1):368-373.