Bioinformatics: LSCF Publications

  1. Hanson R. M., Prilusky J., Renjian Z., Nakane T. & Sussman J. L. (2013). JSmol and the next-generation web-based representation of 3D molecular structure as applied to proteopedia.  Israel Journal of Chemistry. 2013 Apr , 53 (3-4):207-216.
  2. Tzarfati R., Ben-Dor S., Sela I. & Goldschmidt E. E. (2013). Graft-induced Changes in MicroRNA Expression Patterns in Citrus Leaf Petioles.  The Open Plant Science Journal. 2013 May 4 , 7 :17-23.
  3. Belinky F., Bahir I., Stelzer G., Zimmerman S., Rosen N., Nativ N., Dalah I., Stein T. I., Rappaport N., Mituyama T., Safran M. & Lancet D. (2013). Non-redundant compendium of human ncRNA genes in GeneCards.  Bioinformatics. 2013 Jan 15 , 29 (2):255-261.
  4. Ben Ami A. O., Friedman D., Leshkowitz D., Goldenberg D., Orlovsky K., Pencovich N., Lotem J., Tanay A. & Groner Y. (2013). Addiction of t(8;21) and inv(16) Acute Myeloid Leukemia to Native RUNX1.  Cell Reports. 2013 Sept 26 , 4 (6):1131-1143.
  5. Shi J., Adato A., Alkan N., He Y., Lashbrooke J., Matas A. J., Meir S., Malitsky S., Isaacson T., Prusky D., Leshkowitz D., Schreiber L., Granell A. R., Widemann E., Grausem B., Pinot F., Rose J. K. C., Rogachev I. & Rothan C. (2013). The tomato SlSHINE3 transcription factor regulates fruit cuticle formation and epidermal patterning.  NEW PHYTOLOGIST. 2013 Jan , 197 (2):468-480.
  6. Slutzki M., Jobby M. K., Chitayat S., Karpol A., Dassa B., Barak Y., Lamed R., Smith S. P. & Bayer E. A. (2013). Intramolecular clasp of the cellulosomal Ruminococcus flavefaciens ScaA dockerin module confers structural stability.  FEBS Open Bio. 2013, 3 :398-.
  7. Sorci M., Dassa B., Liu H., Anand G., Dutta A. K., Pietrokovski S., Belfort M. & Belfort G. (2013). Oriented covalent immobilization of antibodies for measurement of intermolecular binding forces between zipper-like contact surfaces of split inteins.  Analytical Chemistry. 2013 Jun 18 , 85 (12):6080-6088.
  8. Prilusky J., Decatur W. & Martz E. (2013). Publishing in proteopedia: The guide.  . 2013 Feb 21 , :277-295.
  9. Zepeda V., Dassa B., Borovok I., Lamed R., Bayer E. A. & Cate J. H. (2013). Draft genome sequence of the cellulolytic bacterium Clostridium papyrosolvens C7 (ATCC 700395).  Genome Announcements. 2013 Sept 12 , 1 (5).
  10. Rappaport N., Nativ N., Stelzer G., Twik M., Guan-Golan Y., Stein T. I., Bahir I., Belinky F., Morrey C. P., Safran M. & Lancet D. (2013). MalaCards: An integrated compendium for diseases and their annotation.  Database-The Journal Of Biological Databases And Curation. 2013, 2013 .
  11. Olender T., Safran M., Edgar R., Stelzer G., Nativ N., Rosen N., Shtrichman R., Mazor Y., West M. D., Keydar I., Rappaport N., Belinky F., Warshawsky D. & Lancet D. (2013). An overview of synergistic data tools for biological scrutiny.  Israel Journal of Chemistry. 2013 Apr , 53 (3-4):185-198.
  12. Tidhar R., Ben-Dor S., Wang E., Kelly S., Merrill A. H. J. & Futerman A. H. (2012). Acyl chain specificity of ceramide synthases is determined within a region of 150 residues in the tram-lag-CLN8 (TLC) domain.  Journal of Biological Chemistry. 2012 Jan 27 , 287 (5):3197-3206.
  13. Tsvetkov P., Myers N., Moscovitz O., Sharon M., Prilusky J. & Shaul Y. (2012). Thermo-resistant intrinsically disordered proteins are efficient 20S proteasome substrates.  Molecular BioSystems. 2012 Jan , 8 (1):368-373.
  14. Frenkel-Morgenstern M., Lacroix V., Ezkurdia I., Levin Y., Gabashvili A., Prilusky J., del Pozo P. A., Tress M., Johnson R., Guigo R. & Valencia A. (2012). Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts.  Genome Research. 2012 Jul , 22 (7):1231-1242.
  15. Prilusky J. & Hodis E. (2012). Proteopedia entry: "Tutorial: How we get the oxygen we breathe".  Biochemistry and Molecular Biology Education. 2012 Sept , 40 (5):339.
  16. Biran J., Palevitch O., Ben-Dor S. & Levavi-Sivan B. (2012). Neurokinin Bs and neurokinin B receptors in zebrafish-potential role in controlling fish reproduction.  Proceedings of the National Academy of Sciences of the United States of America. 2012 Jun 26 , 109 (26):10269-10274.
  17. Sirota-Madi A., Olender T., Helman Y., Brainis I., Finkelshtein A., Roth D., Hagai E., Leshkowitz D., Brodsky L., Galatenko V., Nikolaev V., Gutnick D. L., Lancet D. & Ben-Jacob E. (2012). Genome sequence of the pattern-forming social bacterium: Paenibacillus dendritiformis C454 Chiral Morphotype.  Journal of Bacteriology. 2012 Apr , 194 (8):2127-2128.
  18. Prilusky J., Hodis E. & Sussman J. L. (2012). Proteopedia: Exciting advances in the 3D encyclopedia of biomolecular structure.  . 2012 Oct 17 , :149-161.
  19. Dassa B., Borovok I., Lamed R., Henrissat B., Coutinho P., Hemme C. L., Huang Y., Zhou J. & Bayer E. (2012). Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system.  BMC Genomics. 2012 May 30 , 13 (1).
  20. Shoshani O., Massalha H., Shani N., Kagan S., Ravid O., Madar S., Trakhtenbrot L., Leshkowitz D., Rechavi G. & Zipori D. (2012). Polyploidization of murine mesenchymal cells is associated with suppression of the long noncoding RNA H19 and reduced tumorigenicity.  Cancer Research. 2012 Dec 15 , 72 (24):6403-6413.