Bioinformatics: LSCF Publications

  1. Teper-Bamnolker P., Buskila Y., Lopesco Y., Ben-Dor S., Saad I., Holdengreber V., Belausov E., Zemach H., Ori N., Lers A. & Eshel D. (2012). Release of apical dominance in potato tuber is accompanied by programmed cell death in the apical bud meristem.  Plant Physiology. 2012 Apr 1 , 158 (4):2053-2067.
  2. Prilusky J., Hodis E., Canner D., Decatur W. A., Oberholser K., Martz E., Berchanski A., Harel M. & Sussman J. L. (2011). Proteopedia: A status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.  Journal of Structural Biology. 2011 Aug , 175 (2):244-252.
  3. Blechman J., Amir-Zilberstein L., Gutnick A., Ben-Dor S. & Levkowitz G. (2011). The metabolic regulator PGC-1α directly controls the expression of the hypothalamic neuropeptide oxytocin.  Journal of Neuroscience. 2011 Oct 19 , 31 (42):14835-14840.
  4. Kenan-Eichler M., Leshkowitz D., Tal L., Noor E., Melamed-Bessudo C., Feldman M. & Levy A. (2011). Wheat hybridization and polyploidization results in deregulation of small RNAs.  Genetics. 2011 Jun 1 , 188 (2):263-272.
  5. Shkolnik K., Tadmor A., Ben-Dor S., Nevo N., Galiani D. & Dekel N. (2011). Reactive oxygen species are indispensable in ovulation.  Proceedings of the National Academy of Sciences of the United States of America. 2011 Jan 25 , 108 (4):1462-1467.
  6. Bahari L., Gilad Y., Borovok I., Kahel-Raifer H., Dassa B., Nataf Y., Shoham Y., Lamed R. & Bayer E. A. (2011). Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum.  Journal Of Industrial Microbiology & Biotechnology. 2011 Jul , 38 (7):825-832.
  7. Stelzer G., Dalah I., Stein T. I., Satanower Y., Rosen N., Nativ N., Oz-Levi D., Olender T., Belinky F., Bahir I., Krug H., Perco P., Mayer B., Kolker E., Safran M. & Lancet D. (2011). In-silico human genomics with GeneCards.  Human Genomics. 2011 Oct 1 , 5 (6):709-717.
  8. Mendoza-Fandino G. A., Gee J. M., Ben-Dor S., Gonzalez-Quevedo C., Lee K., Kobayashi Y., Hartiala J., Myers R. M., Leal S. M., Allayee H. & Patel P. I. (2011). A novel g.-1258G>A mutation in a conserved putative regulatory element of PAX9 is associated with autosomal dominant molar hypodontia.  Clinical Genetics. 2011 Sept , 80 (3):265-272.
  9. Fechete R., Heinzel A., Perco P., Mönks K., Söllner J., Stelzer G., Eder S., Lancet D., Oberbauer R., Mayer G. & Mayer B. (2011). Mapping of molecular pathways, biomarkers and drug targets for diabetic nephropathy.  Proteomics Clinical Applications. 2011 Jun , 5 (5-6):354-366.
  10. Tori K., Dassa B., Johnson M. A., Southworth M. W., Brace L. E., Ishino Y., Pietrokovski S. & Perler F. B. (2010). Splicing of the mycobacteriophage bethlehem DnaB intein: Identification of a new mechanistic class of inteins that contain an obligate block f nucleophile.  Journal of Biological Chemistry. 2010 Jan 22 , 285 (4):2515-2526.
  11. Rincon M. T., Dassa B., Flint H. J., Travis A. J., Jindou S., Borovok I., Lamed R., Bayer E., Henrissat B., Coutinho P. M., Antonopoulos D. A., Miller M. E. B. & White B. A. (2010). Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.  PLoS ONE. 2010, 5 (8).
  12. Hodis E., Prilusky J. & Sussman J. L. (2010). Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function.  Biochemistry and Molecular Biology Education. 2010 Sept , 38 (5):341-342.
  13. Safran M., Dalah I., Alexander J., Rosen N., Stein T. I., Shmoish M., Nativ N., Bahir I., Doniger T., Krug H., Sirota-Madi A., Olender T., Golan Y., Stelzer G., Harel A. & Lancet D. (2010). GeneCards Version 3: the human gene integrator..  Database-The Journal Of Biological Databases And Curation. 2010, 2010 :baq020.
  14. Sirota-Madi A., Olender T., Helman Y., Ingham C., Brainis I., Roth D., Hagi E., Brodsky L., Leshkowitz D., Galatenko V., Nikolaev V., Mugasimangalam R. C., Bransburg-Zabary S., Gutnick D. L., Lancet D. & Ben-Jacob E. (2010). Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments.  BMC Genomics. 2010 Dec 17 , 11 (1).
  15. Pewzner-Jung Y., Brenner O., Braun S., Laviad E. L., Ben-Dor S., Feldmesser E., Horn-Saban S., Amann Zalcenstein D., Raanan C., Berkutzki T., Erez Roman R., Ben David O., Levy M., Holzman D., Park H., Nyska A., Merrill, Jr. A. H. & Futerman A. H. (2010). A critical role for ceramide synthase 2 in liver homeostasis II. Insights into molecular changes leading to hepatopathy.  Journal of Biological Chemistry. 2010 Apr 2 , 285 (14):10911-10923.
  16. Stelzer G., Inger A., Olender T., Iny Stein S. T., Dalah I., Harel A., Safran M. & Lancet D. (2009). GeneDecks: Paralog hunting and gene-set distillation with genecards annotation.  Omics-A Journal Of Integrative Biology. 2009 Dec 1 , 13 (6):477-487.
  17. Hodis E., Prilusky J. & Sussman J. L. (2009). Tools to Make 3D Structural Data More Comprehensible:  Emovie & Proteopedia.  . 2009, :169-182.
  18. Frenkel-Morgenstern M., Cohen A., Geva Zatorsky Z. N., Eden E., Prilusky J., Issaeva I., Sigal A., Cohen-Saidon C., Liron Y., Cohen L., Danon T., Perzov N. & Alon U. (2009). Dynamic proteomics: A database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells.  Nucleic Acids Research. 2009 Oct 9 , 38 (SUPPL.1):D508-D512.
  19. Manevich-Mendelson E., Feigelson S., Pasvolsky R., Aker M., Grabovsky V., Shulman Z., Kilic S. S., Rosenthal-Allieri M. A., Ben-Dor S., Mory A., Bernard A., Moser M., Etzioni A. & Alon R. (2009). Loss of kindlin-3 in LAD-III eliminates LFA-1 but not VLA-4 adhesiveness developed under shear flow conditions.  Blood. 2009, 114 (11):2344-2353.
  20. Noivirt-Brik O., Prilusky J. & Sussman J. L. (2009). Assessment of disorder predictions in CASP8.  Proteins-Structure Function And Bioinformatics. 2009, 77 (SUPPL. 9):210-216.