Bioinformatics: LSCF Publications

  1. Frenkel-Morgenstern M., Lacroix V., Ezkurdia I., Levin Y., Gabashvili A., Prilusky J., del Pozo P. A., Tress M., Johnson R., Guigo R. & Valencia A. (2012). Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts.  Genome Research. 2012 Jul , 22 (7):1231-1242.
  2. Prilusky J. & Hodis E. (2012). Proteopedia entry: "Tutorial: How we get the oxygen we breathe".  Biochemistry and Molecular Biology Education. 2012 Sept , 40 (5):339.
  3. Biran J., Palevitch O., Ben-Dor S. & Levavi-Sivan B. (2012). Neurokinin Bs and neurokinin B receptors in zebrafish-potential role in controlling fish reproduction.  Proceedings of the National Academy of Sciences of the United States of America. 2012 Jun 26 , 109 (26):10269-10274.
  4. Sirota-Madi A., Olender T., Helman Y., Brainis I., Finkelshtein A., Roth D., Hagai E., Leshkowitz D., Brodsky L., Galatenko V., Nikolaev V., Gutnick D. L., Lancet D. & Ben-Jacob E. (2012). Genome sequence of the pattern-forming social bacterium: Paenibacillus dendritiformis C454 Chiral Morphotype.  Journal of Bacteriology. 2012 Apr , 194 (8):2127-2128.
  5. Prilusky J., Hodis E. & Sussman J. L. (2012). Proteopedia: Exciting advances in the 3D encyclopedia of biomolecular structure.  . 2012 Oct 17 , :149-161.
  6. Dassa B., Borovok I., Lamed R., Henrissat B., Coutinho P., Hemme C. L., Huang Y., Zhou J. & Bayer E. (2012). Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system.  BMC Genomics. 2012 May 30 , 13 (1).
  7. Shoshani O., Massalha H., Shani N., Kagan S., Ravid O., Madar S., Trakhtenbrot L., Leshkowitz D., Rechavi G. & Zipori D. (2012). Polyploidization of murine mesenchymal cells is associated with suppression of the long noncoding RNA H19 and reduced tumorigenicity.  Cancer Research. 2012 Dec 15 , 72 (24):6403-6413.
  8. Teper-Bamnolker P., Buskila Y., Lopesco Y., Ben-Dor S., Saad I., Holdengreber V., Belausov E., Zemach H., Ori N., Lers A. & Eshel D. (2012). Release of apical dominance in potato tuber is accompanied by programmed cell death in the apical bud meristem.  Plant Physiology. 2012 Apr 1 , 158 (4):2053-2067.
  9. Prilusky J., Hodis E., Canner D., Decatur W. A., Oberholser K., Martz E., Berchanski A., Harel M. & Sussman J. L. (2011). Proteopedia: A status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.  Journal of Structural Biology. 2011 Aug , 175 (2):244-252.
  10. Blechman J., Amir-Zilberstein L., Gutnick A., Ben-Dor S. & Levkowitz G. (2011). The metabolic regulator PGC-1α directly controls the expression of the hypothalamic neuropeptide oxytocin.  Journal of Neuroscience. 2011 Oct 19 , 31 (42):14835-14840.
  11. Kenan-Eichler M., Leshkowitz D., Tal L., Noor E., Melamed-Bessudo C., Feldman M. & Levy A. (2011). Wheat hybridization and polyploidization results in deregulation of small RNAs.  Genetics. 2011 Jun 1 , 188 (2):263-272.
  12. Shkolnik K., Tadmor A., Ben-Dor S., Nevo N., Galiani D. & Dekel N. (2011). Reactive oxygen species are indispensable in ovulation.  Proceedings of the National Academy of Sciences of the United States of America. 2011 Jan 25 , 108 (4):1462-1467.
  13. Bahari L., Gilad Y., Borovok I., Kahel-Raifer H., Dassa B., Nataf Y., Shoham Y., Lamed R. & Bayer E. A. (2011). Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum.  Journal Of Industrial Microbiology & Biotechnology. 2011 Jul , 38 (7):825-832.
  14. Stelzer G., Dalah I., Stein T. I., Satanower Y., Rosen N., Nativ N., Oz-Levi D., Olender T., Belinky F., Bahir I., Krug H., Perco P., Mayer B., Kolker E., Safran M. & Lancet D. (2011). In-silico human genomics with GeneCards.  Human Genomics. 2011 Oct 1 , 5 (6):709-717.
  15. Mendoza-Fandino G. A., Gee J. M., Ben-Dor S., Gonzalez-Quevedo C., Lee K., Kobayashi Y., Hartiala J., Myers R. M., Leal S. M., Allayee H. & Patel P. I. (2011). A novel g.-1258G>A mutation in a conserved putative regulatory element of PAX9 is associated with autosomal dominant molar hypodontia.  Clinical Genetics. 2011 Sept , 80 (3):265-272.
  16. Fechete R., Heinzel A., Perco P., Mönks K., Söllner J., Stelzer G., Eder S., Lancet D., Oberbauer R., Mayer G. & Mayer B. (2011). Mapping of molecular pathways, biomarkers and drug targets for diabetic nephropathy.  Proteomics Clinical Applications. 2011 Jun , 5 (5-6):354-366.
  17. Tori K., Dassa B., Johnson M. A., Southworth M. W., Brace L. E., Ishino Y., Pietrokovski S. & Perler F. B. (2010). Splicing of the mycobacteriophage bethlehem DnaB intein: Identification of a new mechanistic class of inteins that contain an obligate block f nucleophile.  Journal of Biological Chemistry. 2010 Jan 22 , 285 (4):2515-2526.
  18. Rincon M. T., Dassa B., Flint H. J., Travis A. J., Jindou S., Borovok I., Lamed R., Bayer E., Henrissat B., Coutinho P. M., Antonopoulos D. A., Miller M. E. B. & White B. A. (2010). Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.  PLoS ONE. 2010, 5 (8).
  19. Hodis E., Prilusky J. & Sussman J. L. (2010). Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function.  Biochemistry and Molecular Biology Education. 2010 Sept , 38 (5):341-342.
  20. Safran M., Dalah I., Alexander J., Rosen N., Stein T. I., Shmoish M., Nativ N., Bahir I., Doniger T., Krug H., Sirota-Madi A., Olender T., Golan Y., Stelzer G., Harel A. & Lancet D. (2010). GeneCards Version 3: the human gene integrator..  Database-The Journal Of Biological Databases And Curation. 2010, 2010 :baq020.