Bioinformatics: LSCF Publications

  1. Prilusky J. & Bibi E. (2009). Studying membrane proteins through the eyes of the genetic code revealed a strong uracil bias in their coding mRNAs.  Proceedings of the National Academy of Sciences of the United States of America. 2009 Apr 21 , 106 (16):6662-6666.
  2. Harel A., Inger A., Stelzer G., Strichman-Almashanu L., Dalah I., Safran M. & Lancet D. (2009). GIFtS: Annotation landscape analysis with GeneCards.  BMC Bioinformatics. 2009 Oct 23 , 10 .
  3. Ben David D. M., Noivirt-Brik O., Paz A., Prilusky J., Sussman J. & Levy Y. (2009). Assessment of CASP8 structure predictions for template free targets.  Proteins-Structure Function And Bioinformatics. 2009, 77 (SUPPL. 9):50-65.
  4. Sapoznik S., Cohen B., Tzuman Y., Meir G., Ben-Dor S., Harmelin A. & Neeman M. (2009). Gonadotropin-regulated lymphangiogenesis in ovarian cancer is mediated by LEDGF-induced expression of VEGF-C.  Cancer Research. 2009 Dec 15 , 69 (24):9306-9314.
  5. Cohen B., Addadi Y., Sapoznik S., Meir G., Kalchenko V., Harmelin A., Ben-Dor S. & Neeman M. (2009). Transcriptional regulation of vascular endothelial growth factor C by oxidative and thermal stress is mediated by lens epithelium-derived growth factor/p751,2.  Neoplasia. 2009 Sept , 11 (9):921-933.
  6. Dassa B., London N., Stoddard B. L., Schueler-Furman O. & Pietrokovski S. (2009). Fractured genes: A novel genomic arrangement involving new split inteins and a new homing endonuclease family.  Nucleic Acids Research. 2009, 37 (8):2560-2573.
  7. Dori-Bachash M., Dassa B., Peleg O., Pineiro S. A., Jurkevitch E. & Pietrokovski S. (2009). Bacterial intein-like domains of predatory bacteria: A new domain type characterized in Bdellovibrio bacteriovorus.  Functional & Integrative Genomics. 2009, 9 (2):153-166.
  8. Tompa P., Prilusky J., Silman I. & Sussman J. (2008). Structural disorder serves as a weak signal for intracellular protein degradation.  Proteins-Structure Function And Bioinformatics. 2008 May 1 , 71 (2):903-909.
  9. Graslund S., Peleg Y., Albeck S., Unger T., Dym O., Prilusky J. & Sussman J. L. (2008). Protein production and purification.  Nature Methods. 2008 Feb , 5 (2):135-146.
  10. Hodis E., Prilusky J., Martz E., Silman I., Moult J. & Sussman J. L. (2008). Proteopedia - A scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.  GENOME BIOLOGY. 2008 Aug 3 , 9 (8).
  11. Biran J., Ben-Dor S. & Levavi-Sivan B. (2008). Molecular identification and functional characterization of the kisspeptin/kisspeptin receptor system in lower vertebrates.  Biology of Reproduction. 2008 Oct , 79 (4):776-786.
  12. Shkolnik K., Ben-Dor S., Galianil D., Hourvitz A. & Dekel N. (2008). Molecular characterization and bioinformatics analysis of Ncoa7B, a novel ovulation-associated and reproduction system-specific Ncoa7 isoform.  Reproduction. 2008 Mar , 135 (3):321-333.
  13. Dori-Bachash M., Dassa B., Pietrokovski S. & Jurkevitch E. (2008). Proteome-based comparative analyses of growth stages reveal new cell cycle-dependent functions in the predatory bacterium Bdellovibrio bacteriovorus.  Applied and Environmental Microbiology. 2008 Dec , 74 (23):7152-7162.
  14. Mesika A., Ben-Dor S., Laviad E. L. & Futerman A. H. (2007). A new functional motif in hox domain-containing ceramide synthases: Identification of a novel region flanking the hox and TLC domains essential for activity.  Journal of Biological Chemistry. 2007 Sept 14 , 282 (37):27366-27373.
  15. Shkolnik K., Ben-Dor S., Galiani D., Hourvitz A. & Dekel N. (2007). A novel ovary-specific and ovulation-associated variant of epoxide hydrolase 2.  FEBS Letters. 2007 Oct 16 , 581 (25):4891-4898.
  16. Dassa B., Amitai G., Caspi J., Schueler-Furman O. & Pietrokovski S. (2007). Trans protein splicing of cyanobacterial split inteins in endogenous and exogenous combinations.  Biochemistry. 2007 Jan 9 , 46 (1):322-330.
  17. Pasvolsky R., Feigelson S., Kilic S. S., Simon A. J., Tal-Lapidot G., Grabovsky V., Crittenden J. R., Amariglio N., Safran M., Graybiel A. M., Rechavi G., Ben-Dor S., Etzioni A. & Alon R. (2007). A LAD-III syndrome is associated with defective expression of the Rap-1 activator CalDAG-GEFI in lymphocytes, neutrophils, and platelets.  Journal of Experimental Medicine. 2007 Jul 9 , 204 (7):1571-1582.
  18. Felder C. E., Prilusky J., Silman I. & Sussman J. L. (2007). A server and database for dipole moments of proteins.  Nucleic Acids Research. 2007 Jul , 35 (SUPPL.2):W512-W521.
  19. Esnouf R. M., Hamer R., Sussman J. L., Silman I., Trudgian D., Yang Z. R. & Prilusky J. (2006). Honing the in silico toolkit for detecting protein disorder.  Acta Crystallographica Section D: Biological Crystallography. 2006 Oct , 62 (10):1260-1266.
  20. Albeck S., Alzari P., Andreini C., Banci L., Berry I. M., Bertini I., Cambillau C., Canard B., Carter L., Cohen S. X., Diprose J. M., Dym O., Esnouf R. M., Felder C., Ferron F., Guillemot F., Hamer R., Ben Jelloul J. M., Laskowski R. A., Laurent T., Longhi S., Lopez R., Luchinat C., Malet H., Mochel T., Morris R. J., Moulinier L., Oinn T., Pajon A., Peleg Y., Perrakis A., Poch O., Prilusky J., Rachedi A., Ripp R., Rosato A., Silman I., Stuart D. I., Sussman J., Thierry J. -., Thompson J. D., Thornton J. M., Unger T., Vaughan B., Vranken W., Watson J. D., Whamond G. & Henrick K. (2006). SPINE bioinformatics and data-management aspects of high-throughput structural biology.  ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY. 2006 Oct , 62 (10):1184-1195.