Bioinformatics: LSCF Publications

  1. Mesika A., Ben-Dor S., Laviad E. L. & Futerman A. H. (2007). A new functional motif in hox domain-containing ceramide synthases: Identification of a novel region flanking the hox and TLC domains essential for activity.  Journal of Biological Chemistry. 2007 Sept 14 , 282 (37):27366-27373.
  2. Shkolnik K., Ben-Dor S., Galiani D., Hourvitz A. & Dekel N. (2007). A novel ovary-specific and ovulation-associated variant of epoxide hydrolase 2.  FEBS Letters. 2007 Oct 16 , 581 (25):4891-4898.
  3. Dassa B., Amitai G., Caspi J., Schueler-Furman O. & Pietrokovski S. (2007). Trans protein splicing of cyanobacterial split inteins in endogenous and exogenous combinations.  Biochemistry. 2007 Jan 9 , 46 (1):322-330.
  4. Pasvolsky R., Feigelson S., Kilic S. S., Simon A. J., Tal-Lapidot G., Grabovsky V., Crittenden J. R., Amariglio N., Safran M., Graybiel A. M., Rechavi G., Ben-Dor S., Etzioni A. & Alon R. (2007). A LAD-III syndrome is associated with defective expression of the Rap-1 activator CalDAG-GEFI in lymphocytes, neutrophils, and platelets.  Journal of Experimental Medicine. 2007 Jul 9 , 204 (7):1571-1582.
  5. Felder C. E., Prilusky J., Silman I. & Sussman J. L. (2007). A server and database for dipole moments of proteins.  Nucleic Acids Research. 2007 Jul , 35 (SUPPL.2):W512-W521.
  6. Esnouf R. M., Hamer R., Sussman J. L., Silman I., Trudgian D., Yang Z. R. & Prilusky J. (2006). Honing the in silico toolkit for detecting protein disorder.  Acta Crystallographica Section D: Biological Crystallography. 2006 Oct , 62 (10):1260-1266.
  7. Albeck S., Alzari P., Andreini C., Banci L., Berry I. M., Bertini I., Cambillau C., Canard B., Carter L., Cohen S. X., Diprose J. M., Dym O., Esnouf R. M., Felder C., Ferron F., Guillemot F., Hamer R., Ben Jelloul J. M., Laskowski R. A., Laurent T., Longhi S., Lopez R., Luchinat C., Malet H., Mochel T., Morris R. J., Moulinier L., Oinn T., Pajon A., Peleg Y., Perrakis A., Poch O., Prilusky J., Rachedi A., Ripp R., Rosato A., Silman I., Stuart D. I., Sussman J., Thierry J. -., Thompson J. D., Thornton J. M., Unger T., Vaughan B., Vranken W., Watson J. D., Whamond G. & Henrick K. (2006). SPINE bioinformatics and data-management aspects of high-throughput structural biology.  ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY. 2006 Oct , 62 (10):1184-1195.
  8. Srividhya K. V., Rao G. V., Raghavenderan L., Mehta P., Prilusky J., Manicka S., Sussman J. L. & Krishnaswamy S. (2006). Database and comparative identification of prophages.  . 2006, :863-868.
  9. Pewzner-Jung Y., Ben-Dor S. & Futerman A. H. (2006). When do Lasses (longevity assurance genes) become CerS (ceramide synthases)? Insights into the regulation of ceramide synthesis.  Journal of Biological Chemistry. 2006 Sept 1 , 281 (35):25001-25005.
  10. Prilusky J., Oueillet E., Ulryck N., Pajon A., Bernauer J., Krimm I., Quevillon-Cheruel S., Leulliot N., Graille M., Liger D., Tresaugues L., Sussman J., Janin J., van Tilbeurgh T. H. & Poupon A. (2005). HalX: An open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories.  Acta Crystallographica Section D: Biological Crystallography. 2005 Jun , 61 (6):671-678.
  11. Albeck S., Burstein Y., Dym O., Jacobovitch Y., Levi N., Meged R., Michael Y., Peleg Y., Prilusky J., Schreiber G., Silman I., Unger T. & Sussman J. (2005). Three-dimensional structure determination of proteins related to human health in their functional context at the Israel Structural Proteomics Center (ISPC).  Acta Crystallographica Section D: Biological Crystallography. 2005 Oct , 61 (10):1364-1372.
  12. Jaakola V. P., Prilusky J., Sussman J. L. & Goldman A. (2005). G protein-coupled receptors show unusual patterns of intrinsic unfolding.  PROTEIN ENGINEERING DESIGN & SELECTION. 2005 Feb , 18 (2):103-110.
  13. Sobolev V., Eyal E., Gerzon S., Potapov V., Babor M., Prilusky J. & Edelman M. (2005). SPACE: A suite of tools for protein structure prediction and analysis based on complementarity and environment.  Nucleic Acids Research. 2005 Jul , 33 (SUPPL. 2):W39-W43.
  14. Prilusky J., Felder C., Zeev-Ben-Mordehai T., Rydberg E., Man O., Beckmann J., Silman I. & Sussman J. (2005). FoldIndex©: A simple tool to predict whether a given protein sequence is intrinsically unfolded.  Bioinformatics. 2005 Aug 15 , 21 (16):3435-3438.
  15. Amitai G., Dassa B. & Pietrokovski S. (2004). Protein Splicing of Inteins with Atypical Glutamine and Aspartate C-terminal Residues.  Journal of Biological Chemistry. 2004 Jan 30 , 279 (5):3121-3131.
  16. Prilusky J. (2004). Protein structure visualisation.  Briefings in Bioinformatics. 2004 Mar , 5 (1):89-90.
  17. Ben-Dor S., Esterman N., Rubin E. & Sharon N. (2004). Biases and complex patterns in the residues flanking protein N-glycosylation sites.  Glycobiology. 2004 Feb , 14 (2):95-101.
  18. Dassa B., Yanai I. & Pietrokovski S. (2004). New type of polyubiquitin-like genes with intein-like autoprocessing domains.  Trends in Genetics. 2004 Nov , 20 (11):538-542.
  19. Amitai G., Belenkiy O., Dassa B., Shainskaya A. & Pietrokovski S. (2003). Distribution and function of new bacterial intein-like protein domains.  Molecular Microbiology. 2003, 47 (1):61-73.
  20. Lin D., Manning N., Jiang J., Abola E., Stampf D., Prilusky J. & Sussman J. (2000). AutoDep: A web-based system for deposition and validation of macromolecular structural.  Acta Crystallographica Section D: Biological Crystallography. 2000, 56 (7):828-841.