Bioinformatics: LSCF Publications

  1. Zilkha N., Hamade R., Chuartzman S. G., Sofer Y., Kashash Y., Meir R., Fishman R., Biton I. E., Ben-Dor S. & Kimchi T. (2025). Distinct oxytocin populations support seismic social communication and militant behaviors in a naturally solitary wild rodent.  iScience. 2025 Dec 19 , 28 (12).
  2. Gumpert N., Sagie S., Arnedo-Pac C., Babu T., Weller C., Gonzalez-Perez A., Wang Y., Michel Todó L., Levy R., Chen X., Greenberg P., Dayan-Rubinov M., Yakubovich E., Wasserman-Bartov T., Zerbib M., Gong J., Rebernick R. J., Oliveira Tercero A., Agundez Muriel L., Benedek G., Kedmi M., Oren R., Ben-Dor S., Levin Y., Troyanskaya O. G., Munzur A. D., Wyatt A. W., Cieslik M. P., Quigley D. A., Van Allen E. M., Anandasabapathy N., Mateo J., Yang X., Martínez-Jiménez F., Lopez-Bigas N. & Samuels Y. (2025). Recurrent Immunogenic Neoantigens and Their Cognate T-cell Receptors in Treatment-Resistant Metastatic Prostate Cancer.  Cancer Discovery. 2025 Dec 10 , :OF1-OF20.
  3. Haddad M., Trzebanski S., Bossardi Ramos R., Ordonez Moreno L. A., Rahtes A., Khatib-Massalha E., Chakrabarti P., Petrovich-Kopitman E., Wigoda N., Biram A., Poller W. C., Aroca-Crevillén A., Hidalgo A., Fredman G., Swirski F. K., Egeblad M., Markus R. P., Schlegel M., Jung S., Lapidot T., Adrover J. M. & Kollet O. (2025). Diurnally-Regulated Corticosterone and Melatonin Inversely Control Endotoxin-Induced Acute Immune Responses.  European Journal of Immunology. 2025 Nov , 55 (11).
  4. Eyal Z., Deis R., Gorelick-Ashkenazi A., Barzilay Y., Broder Y., Kellum A. P., Varsano N., Hartstein M., Sorrentino A., Rotkopf R., Kaplan-Ashiri I., Rechav K., Metzler R., Houben L., Kronik L., Rez P. & Gur D. (2025). pH variations enable guanine crystal formation within iridosomes.  Nature Chemical Biology. 2025 Sept 2 , 22 (1):19-27.
  5. Boura-Halfon S., Haffner-Krausz R., Ben-Dor S., Kim J. S. & Jung S. (2024). Tackling Tissue Macrophage Heterogeneity by SplitCre Transgenesis.  . 2024, :481-503.
  6. Aram L., de Haan D., Varsano N., Gilchrist J. B., Heintze C., Rotkopf R., Rechav K., Elad N., Kröger N. & Gal A. (2024). Intracellular morphogenesis of diatom silica is guided by local variations in membrane curvature.  Nature Communications. 2024 Sept 10 , 15 .
  7. Arbel-Goren R., Dassa B., Zhitnitsky A., Valladares A., Herrero A., Flores E. & Stavans J. (2024). Spatio-temporal coherence of circadian clocks and temporal control of differentiation in Anabaena filaments.  mSystems. 2024 Jan 23 , 9 (1).
  8. Nevo S., Frenkel N., Kadouri N., Gome T., Rosenthal N., Givony T., Avin A., Peligero Cruz C., Kedmi M., Lindzen M., Ben Dor S., Damari G., Porat Z., Haffner-Krausz R., Keren-Shaul H., Yarden Y., Munitz A., Leshkowitz D., Goldfarb Y. & Abramson J. (2024). Tuft cells and fibroblasts promote thymus regeneration through ILC2-mediated type 2 immune response.  Science Immunology. 2024 Jan , 9 (91).
  9. Nevo S., Frenkel N., Kadouri N., Gome T., Rosenthal N., Givony T., Avin A., Peligero Cruz C., Kedmi M., Lindzen M., Ben Dor S., Damari G., Porat Z., Haffner-Krausz R., Keren-Shaul H., Yarden Y., Munitz A., Leshkowitz D., Goldfarb Y. & Abramson J. (2024). Tuft cells and fibroblasts promote thymus regeneration through ILC2-mediated type 2 immune response.  Science Immunology. 2024 Jan , 9 (91).
  10. Haque R., Kurien S. P., Setty H., Salzberg Y., Stelzer G., Litvak E., Gingold H., Rechavi O. & Oren-Suissa M. (2024). Sex-Specific Developmental Gene Expression Atlas Unveils Dimorphic Gene Networks in C. elegans.  Nature Communications. 2024 May 20 , 15 (1).
  11. Sekeresova K. J., Lena F., Catalina D., Shifra B. & Steffen J. (2024). Draft genome of Kazachstania heterogenica var. weizmannii, a commensal fungus of the mouse digestive tract.  Microbiology Resource Announcements. 2024 Apr , 13 (4).
  12. Kagan Ben Tikva S., Gurwitz N., Sivan E., Hirsch D., Hezroni-Barvyi H., Biram A., Moss L., Wigoda N., Egozi A., Monziani A., Golani O., Gross M., Tenenbaum A. & Shulman Z. (2024). T cell help induces Myc transcriptional bursts in germinal center B cells during positive selection.  Science immunology. 2024 Mar 29 , 9 (93).
  13. de Haan D., Ramos N. H., Meng Y. F., Rotkopf R., Addadi Y., Rosenhek-Goldian I. & Gal A. (2024). Decoupling cell size homeostasis in diatoms from the geometrical constraints of the silica cell wall.  New Phytologist. 2024 Jul , 243 (1):258-270.
  14. Yahalom-Ronen Y., Melamed S., Politi B., Erez N., Tamir H., Bar-On L., Ryvkin J., Leshkowitz D., Israeli O., Weiss S., Ben-Shmuel A., Barlev-Gross M., Cherry Mimran L., Achdout H., Paran N. & Israely T. (2024). Induction of Superior Systemic and Mucosal Protective Immunity to SARS-CoV-2 by Nasal Administration of a VSVΔGSpike Vaccine.  Vaccines. 2024 May , 12 (5).
  15. Lim L. Q. J., Adler L., Hajaj E., Soria L. R., Perry R. B. T., Darzi N., Brody R., Furth N., Lichtenstein M., Bab-Dinitz E., Porat Z., Melman T., Brandis A., Aylon Y., Ben-Dor S., Orr I., Pri-Or A., Seger R., Shaul Y., Ruppin E., Oren M., Perez M., Meier J., Brunetti-Pierri N., Shema E., Ulitsky I., Erez A., Malitsky S. & Itkin M. (2024). ASS1 metabolically contributes to the nuclear and cytosolic p53-mediated DNA damage response.  Nature metabolism. 2024 Jul , 6 (7):1294-1309.
  16. Yado S., Dassa B., Zoabi R., Reich-Zeliger S., Friedman N. & Geiger B. (2024). Molecular mechanisms underlying the modulation of T-cell proliferation and cytotoxicity by immobilized CCL21 and ICAM1.  Journal for ImmunoTherapy of Cancer. 2024 Jun , 12 (6).
  17. Sekeresova Kralova J., Donic C., Dassa B., Livyatan I., Jansen P. M., Ben-Dor S., Fidel L., Trzebanski S., Narunsky-Haziza L., Asraf O., Brenner O., Dafni H., Jona G., Boura-Halfon S., Stettner N., Segal E., Brunke S., Pilpel Y., Straussman R., Zeevi D., Bacher P., Hube B., Shlezinger N. & Jung S. (2024). Competitive fungal commensalism mitigates candidiasis pathology.  Journal of Experimental Medicine. 2024 May 6 , 221 (5).
  18. Sekeresova Kralova J., Donic C., Dassa B., Livyatan I., Jansen P. M., Ben-Dor S., Fidel L., Trzebanski S., Narunsky-Haziza L., Asraf O., Brenner O., Dafni H., Jona G., Boura-Halfon S., Stettner N., Segal E., Brunke S., Pilpel Y., Straussman R., Zeevi D., Bacher P., Hube B., Shlezinger N. & Jung S. (2024). Competitive fungal commensalism mitigates candidiasis pathology.  Journal of Experimental Medicine. 2024 May 6 , 221 (5).
  19. Stroganov S., Harris T., Alyagor L., Ben Moyal L., Plitman Mayo R., Golani O., Hirsch D., Ben-Dor S., Brandis A., Mehlman T., Kovo M., Biron-Shental T., Dekel N. & Neeman M. (2024). The differential regulation of placenta trophoblast bisphosphoglycerate mutase in fetal growth restriction: preclinical study in mice and observational histological study of human placenta.  eLife. 2024 Feb 5 , 13 .
  20. Xintian L., Oscar G., Elias A., Bareket D., L. C. D., Joel S. & Rinat A. (2024). Stability and gene strand bias of lambda prophages and chromosome organization in Escherichia coli.  mBio. 2024 Jul 17 , 15 (7):e0207823.