Bioinformatics: LSCF Publications

  1. Lim L. Q. J., Adler L., Hajaj E., Soria L. R., Perry R. B. T., Darzi N., Brody R., Furth N., Lichtenstein M., Bab-Dinitz E., Porat Z., Melman T., Brandis A., Malitsky S., Itkin M., Aylon Y., Ben-Dor S., Orr I., Pri-Or A., Seger R., Shaul Y., Ruppin E., Oren M., Perez M., Meier J., Brunetti-Pierri N., Shema E., Ulitsky I. & Erez A. (2024). ASS1 metabolically contributes to the nuclear and cytosolic p53-mediated DNA damage response.  Nature metabolism. 2024 Jul , 6 (7):1294-1309.
  2. Sekeresova Kralova J., Donic C., Dassa B., Livyatan I., Jansen P. M., Ben-Dor S., Fidel L., Trzebanski S., Narunsky-Haziza L., Asraf O., Brenner O., Dafni H., Jona G., Boura-Halfon S., Stettner N., Segal E., Brunke S., Pilpel Y., Straussman R., Zeevi D., Bacher P., Hube B., Shlezinger N. & Jung S. (2024). Competitive fungal commensalism mitigates candidiasis pathology.  Journal of Experimental Medicine. 2024 May 6 , 221 (5).
  3. Stroganov S., Harris T., Alyagor L., Ben Moyal L., Plitman Mayo R., Golani O., Hirsch D., Ben-Dor S., Brandis A., Mehlman T., Kovo M., Biron-Shental T., Dekel N. & Neeman M. (2024). The differential regulation of placenta trophoblast bisphosphoglycerate mutase in fetal growth restriction: preclinical study in mice and observational histological study of human placenta.  eLife. 2024 Feb 5 , 13 .
  4. Yado S., Dassa B., Zoabi R., Reich-Zeliger S., Friedman N. & Geiger B. (2024). Molecular mechanisms underlying the modulation of T-cell proliferation and cytotoxicity by immobilized CCL21 and ICAM1.  Journal for ImmunoTherapy of Cancer. 2024 Jun , 12 (6).
  5. Li X., Gallardo O., August E., Dassa B., Court D. L., Stavans J. & Arbel-Goren R. (2024). Stability and gene strand bias of lambda prophages and chromosome organization in Escherichia coli.  mBio. 2024 Jul , 15 (7).
  6. Abraham O., Ben-Dor S., Goliand I., Haffner-Krausz R., Colaiuta S. P., Kovalenko A. & Yaron A. (2024). Siah3 acts as a physiological mitophagy suppressor that facilitates axonal degeneration.  Science Signaling. 2024 Oct 8 , 17 (857).
  7. Zelnik I. D., Mestre B., Weinstein J. J., Dingjan T., Izrailov S., Ben-Dor S., Fleishman S. J. & Futerman A. H. (2023). Computational design and molecular dynamics simulations suggest the mode of substrate binding in ceramide synthases.  Nature Communications. 2023 Dec , 14 (1).
  8. Shemi A., Ben-Dor S., Rotkopf R., Dym O. & Vardi A. (2023). Phylogeny and biogeography of the algal DMS-releasing enzyme in the global ocean.  ISME Communications. 2023 Dec , 3 (1).
  9. Brivio E., Kos A., Ulivi A. F., Karamihalev S., Ressle A., Stoffel R., Hirsch D., Stelzer G., Schmidt M. V., Lopez J. P. & Chen A. (2023). Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus.  Cell Reports. 2023 Aug 29 , 42 (8).
  10. Swaminathan A., Gliksberg M., Anbalagan S., Wigoda N. & Levkowitz G. (2023). Stress resilience is established during development and is regulated by complement factors.  Cell Reports. 2023 Jan 31 , 42 (1).
  11. Sapoznikov A., Kozlovski S., Levi N., Feigelson S. W., Regev O., Davidzohn N., Ben-Dor S., Haffner-Krausz R., Feldmesser E., Wigoda N., Petrovich-Kopitman E., Biton M. & Alon R. (2023). Dendritic cell ICAM-1 strengthens synapses with CD8 T cells but is not required for their early differentiation.  Cell Reports. 2023 Aug 29 , 42 (8).
  12. Sapoznikov A., Kozlovski S., Levi N., Feigelson S. W., Regev O., Davidzohn N., Ben-Dor S., Haffner-Krausz R., Feldmesser E., Wigoda N., Petrovich-Kopitman E., Biton M. & Alon R. (2023). Dendritic cell ICAM-1 strengthens synapses with CD8 T cells but is not required for their early differentiation.  Cell Reports. 2023 Aug 29 , 42 (8).
  13. Michael D., Feldmesser E., Gonen C., Furth N., Maman A., Heyman O., Argoetti A., Tofield A., Baichman-Kass A., Ben-Dov A., Benbenisti D., Hen N., Rotkopf R., Ganci F., Blandino G., Ulitsky I. & Oren M. (2023). miR-4734 conditionally suppresses ER stress-associated proinflammatory responses.  FEBS Letters. 2023 May , 597 (9):1233-1245.
  14. Venghateri J. B., Dassa B., Morgenstern D., Shreberk-Shaked M., Oren M. & Geiger B. (2023). Deciphering the involvement of the Hippo pathway co-regulators, YAP/TAZ in invadopodia formation and matrix degradation.  Cell Death and Disease. 2023 Apr , 14 (4).
  15. Levi N., Papismadov N., Majewska J., Roitman L., Wigoda N., Eilam R., Tsoory M., Rotkopf R., Ovadya Y., Akiva H., Regev O. & Krizhanovsky V. (2023). p21 facilitates chronic lung inflammation via epithelial and endothelial cells.  Aging (Albany, NY.). 2023, 15 (7):2395-2417.
  16. Bornstein B., Heinemann-Yerushalmi L., Krief S., Adler R., Dassa B., Leshkowitz D., Kim M., Bewick G., Banks R. W. & Zelzer E. (2023). Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.  eLife. 2023 Feb 6 , 12 .
  17. Pokorna S., Khersonsky O., Lipsh-Sokolik R., Goldenzweig A., Nielsen R., Ashani Y., Peleg Y., Unger T., Albeck S., Dym O., Tirosh A., Tarayra R., Hocquemiller M., Laufer R., Ben-Dor S., Silman I., Sussman J. L., Fleishman S. J. & Futerman A. H. (2023). Design of a stable human acid-β-glucosidase: towards improved Gaucher disease therapy and mutation classification.  FEBS Journal. 2023 Jul , 290 (13):3383-3399.
  18. Cruz Camacho A., Kiper E., Oren S., Zaharoni N., Nir N., Soffer N., Noy Y., Ben David B., Rivkin A., Rotkopf R., Michael D., Carvalho T. G. & Regev-Rudzki N. (2023). High-throughput analysis of the transcriptional patterns of sexual genes in malaria.  Parasites and Vectors. 2023 Dec , 16 (1).
  19. Bornstein B., Heinemann-Yerushalmi L., Krief S., Adler R., Dassa B., Leshkowitz D., Kim M., Bewick G., Banks R. W. & Zelzer E. (2023). Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.  eLife. 2023 Feb 6 , 12 .
  20. Levi N., Papismadov N., Majewska J., Roitman L., Wigoda N., Eilam R., Tsoory M., Rotkopf R., Ovadya Y., Akiva H., Regev O. & Krizhanovsky V. (2023). p21 facilitates chronic lung inflammation via epithelial and endothelial cells.  Aging (Albany, NY.). 2023, 15 (7):2395-2417.