Bioinformatics: LSCF Publications

  1. Bigelman E., Pasmanik-Chor M., Dassa B., Itkin M., Malitsky S., Dorot O., Pichinuk E., Kleinberg Y., Keren G. & Entin-Meer M. (2023). Kynurenic acid, a key L-tryptophan-derived metabolite, protects the heart from an ischemic damage.  PLoS ONE. 2023 Aug 24 , 18 (8).
  2. Givony T., Leshkowitz D., Del Castillo D., Nevo S., Kadouri N., Dassa B., Gruper Y., Khalaila R., Ben-Nun O., Gome T., Dobeš J., Ben-Dor S., Kedmi M., Keren-Shaul H., Heffner-Krausz R., Porat Z., Golani O., Addadi Y., Brenner O., Lo D. D., Goldfarb Y. & Abramson J. (2023). Thymic mimetic cells function beyond self-tolerance.  Nature. 2023 Oct 5 , 622 (7981):164172.
  3. Givony T., Leshkowitz D., Del Castillo D., Nevo S., Kadouri N., Dassa B., Gruper Y., Khalaila R., Ben-Nun O., Gome T., Dobeš J., Ben-Dor S., Kedmi M., Keren-Shaul H., Heffner-Krausz R., Porat Z., Golani O., Addadi Y., Brenner O., Lo D. D., Goldfarb Y. & Abramson J. (2023). Thymic mimetic cells function beyond self-tolerance.  Nature. 2023 Oct 5 , 622 (7981):164172.
  4. Givony T., Leshkowitz D., Del Castillo D., Nevo S., Kadouri N., Dassa B., Gruper Y., Khalaila R., Ben-Nun O., Gome T., Dobeš J., Ben-Dor S., Kedmi M., Keren-Shaul H., Heffner-Krausz R., Porat Z., Golani O., Addadi Y., Brenner O., Lo D. D., Goldfarb Y. & Abramson J. (2023). Thymic mimetic cells function beyond self-tolerance.  Nature. 2023 Oct 5 , 622 (7981):164172.
  5. Dey S., Barkai O., Gokhman I., Suissa S., Haffner-Krausz R., Wigoda N., Feldmesser E., Ben-Dor S., Kovalenko A., Binshtok A. & Yaron A. (2023). Kinesin family member 2A gates nociception.  Cell Reports. 2023 Oct 31 , 42 (10).
  6. Dey S., Barkai O., Gokhman I., Suissa S., Haffner-Krausz R., Wigoda N., Feldmesser E., Ben-Dor S., Kovalenko A., Binshtok A. & Yaron A. (2023). Kinesin family member 2A gates nociception.  Cell Reports. 2023 Oct 31 , 42 (10).
  7. Chen Q., Leshkowitz D., Li H., van Impel A., Schulte-Merker S., Amit I., Rizzoti K. & Levkowitz G. (2023). Neural plate progenitors give rise to both anterior and posterior pituitary cells.  Developmental Cell. 2023 Dec 4 , 58 (23):2652-2665.e6.
  8. Oftedal B. E., Berger A. H., Bruserud Ø., Goldfarb Y., Sulen A., Breivik L., Hellesen A., Ben-Dor S., Haffner-Krausz R., Knappskog P. M., Johansson S., Wolff A. S., Bratland E., Abramson J. & Husebye E. S. (2023). A partial form of AIRE deficiency underlies a mild form of autoimmune polyendocrine syndrome type 1.  The Journal of Clinical Investigation. 2023 Nov 1 , 133 (21).
  9. Chourasia S., Petucci C., Wang H., Han X., Sivan E., Brandis A., Mehlman T., Malitsky S., Itkin M., Rotkopf R., Regev L., Zaltsman Y. & Gross A. (2023). High-energy demand and nutrient exhaustion in MTCH2 knockout cells.  BioRxiv. 2023 Dec 16 , .
  10. Gruper Y., Wolff A. S. B., Glanz L., Spoutil F., Marthinussen M. C., Osickova A., Herzig Y., Goldfarb Y., Aranaz-Novaliches G., Dobeš J., Kadouri N., Ben-Nun O., Binyamin A., Lavi B., Givony T., Khalaila R., Gome T., Wald T., Mrazkova B., Sochen C., Besnard M., Ben-Dor S., Feldmesser E., Orlova E. M., Hegedűs C., Lampé I., Papp T., Felszeghy S., Sedlacek R., Davidovich E., Tal N., Shouval D. S., Shamir R., Guillonneau C., Szondy Z., Lundin K. E. A., Osicka R., Prochazka J., Husebye E. S. & Abramson J. (2023). Autoimmune amelogenesis imperfecta in patients with APS-1 and coeliac disease.  Nature. 2023 Dec 21 , 624 (7992):653-662.
  11. Brivio E., Kos A., Ulivi A. F., Karamihalev S., Ressle A., Stoffel R., Hirsch D., Stelzer G., Schmidt M. V., Lopez J. P. & Chen A. (2023). Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus.  Cell Reports. 2023 Aug 29 , 42 (8).
  12. Fox H., Ben-Dor S., Doron-Faigenboim A., Goldsmith M., Klein T. & David-Schwartz R. (2023). Carbohydrate dynamics in Populus trees under drought: An expression atlas of genes related to sensing, translocation, and metabolism across organs.  Physiologia Plantarum. 2023 Sept , 175 (5).
  13. Danino Y. M., Molitor L., Rosenbaum-Cohen T., Kaiser S., Cohen Y., Porat Z., Marmor-Kollet H., Katina C., Savidor A., Rotkopf R., Ben-Isaac E., Golani O., Levin Y., Monchaud D., Hickson I. D. & Hornstein E. (2023). BLM helicase protein negatively regulates stress granule formation through unwinding RNA G-quadruplex structures.  Nucleic Acids Research. 2023 Sept 22 , 51 (17):9369-9384.
  14. de Haan D., Aram L., Peled-Zehavi H., Addadi Y., Ben-Joseph O., Rotkopf R., Elad N., Rechav K. & Gal A. (2023). Exocytosis of the silicified cell wall of diatoms involves extensive membrane disintegration.  Nature Communications. 2023 Dec , 14 (1).
  15. Azuri I., Wattad A., Peri-Hanania K., Kashti T., Rosen R., Caspi Y., Istaiti M., Wattad M., Applbaum Y., Zimran A., Revel-Vilk S. & C. Eldar Y. (2023). A Deep-Learning Approach to Spleen Volume Estimation in Patients with Gaucher Disease.  Journal of Clinical Medicine. 2023 Aug , 12 (16).
  16. Kadouri N., Giladi T., Katz S., Hey J., Ben-Dor S., Damari G., Dassa B., Dobes J., Dieter W., Bähr M., Paulsen M., Haffner-Krausz R., Mall M. A., Plass C., Kafka Y. & Abramson J. (2022). Transcriptional regulation of the thymus master regulator Foxn1.  Science Immunology. 2022 Aug , 7 (74).
  17. Leshkowitz D., Kedmi M., Fried Y., Pilzer D., Keren-Shaul H., Ainbinder E. & Dassa B. (2022). Exploring differential exon usage via short- and long-read RNA sequencing strategies.  Open Biology. 2022 Sept 28 , 12 (9).
  18. Leshkowitz D., Kedmi M., Fried Y., Pilzer D., Keren-Shaul H., Ainbinder E. & Dassa B. (2022). Exploring differential exon usage via short- and long-read RNA sequencing strategies.  Open Biology. 2022 Sept 28 , 12 (9).
  19. Ben Ami Pilo H., Khan Khilji S., Lühle J., Biskup K., Levy Gal B., Rosenhek Goldian I., Alfandari D., Revach O. Y., Kiper E., Morandi M. I., Rotkopf R., Porat Z., Blanchard V., Seeberger P. H., Regev-Rudzki N. & Moscovitz O. (2022). Sialylated N-glycans mediate monocyte uptake of extracellular vesicles secreted from Plasmodium falciparum-infected red blood cells.  Journal of Extracellular Biology. 2022 Feb , 1 (2).
  20. Kadouri N., Giladi T., Katz S., Hey J., Ben-Dor S., Damari G., Dassa B., Dobes J., Dieter W., Bähr M., Paulsen M., Haffner-Krausz R., Mall M. A., Plass C., Kafka Y. & Abramson J. (2022). Transcriptional regulation of the thymus master regulator Foxn1.  Science Immunology. 2022 Aug , 7 (74).