Bioinformatics: LSCF Publications

  1. Varadi M., Anyango S., Armstrong D., Berrisford J., Choudhary P., Deshpande M., Nadzirin N., Nair S. S., Pravda L., Tanweer A., Al-Lazikani B., Andreini C., Barton G. J., Bednar D., Berka K., Dey S., Levy E. D., London N., Prilusky J. & Zaidman D. (2022). PDBe-KB: collaboratively defining the biological context of structural data.  Nucleic Acids Research. 2022, 50 (D1):D534-D542.
  2. Leshkowitz D., Kedmi M., Fried Y., Pilzer D., Keren-Shaul H., Ainbinder E. & Dassa B. (2022). Exploring differential exon usage via short- and long-read RNA sequencing strategies.  Open Biology. 2022 Sept 28 , 12 (9).
  3. Regev O., Kizner M., Roncato F., Dadiani M., Saini M., Castro-Giner F., Yajuk O., Kozlovski S., Levi N., Addadi Y., Golani O., Ben-Dor S., Granot Z., Aceto N. & Alon R. (2022). ICAM-1 on Breast Cancer Cells Suppresses Lung Metastasis but Is Dispensable for Tumor Growth and Killing by Cytotoxic T Cells.  Frontiers in Immunology. 2022 Jul 11 , 13 .
  4. Leshkowitz D., Kedmi M., Fried Y., Pilzer D., Keren-Shaul H., Ainbinder E. & Dassa B. (2022). Exploring differential exon usage via short- and long-read RNA sequencing strategies.  Open Biology. 2022 Sept 28 , 12 (9).
  5. Eitan C., Siany A., Barkan E., Olender T., van Eijk K. R., Moisse M., Farhan S. M., Danino Y. M., Yanowski E., Marmor-Kollet H., Rivkin N., Yacovzada N. S., Hung S. T., Cooper-Knock J., Cohen Y., Ainbinder E., Ben-Dor S., Segal E., Hornstein E. & Hornstein E. (2022). Whole-genome sequencing reveals that variants in the Interleukin 18 Receptor Accessory Protein 3UTR protect against ALS.  Nature Neuroscience. 2022 Apr 1 , 25 (4):433-445.
  6. Sehrawat U., Haimov O., Weiss B., Tamarkin-Ben Harush A., Ashkenazi S., Plotnikov A., Noiman T., Leshkowitz D., Stelzer G. & Dikstein R. (2022). Inhibitors of eIF4G1-eIF1 uncover its regulatory role of ER/UPR stress-response genes independent of eIF2a-phosphorylation.  Proceedings of the National Academy of Sciences of the United States of America. 2022 Jul 26 , 119 (30).
  7. Sehrawat U., Haimov O., Weiss B., Tamarkin-Ben Harush A., Ashkenazi S., Plotnikov A., Noiman T., Leshkowitz D., Stelzer G. & Dikstein R. (2022). Inhibitors of eIF4G1-eIF1 uncover its regulatory role of ER/UPR stress-response genes independent of eIF2a-phosphorylation.  Proceedings of the National Academy of Sciences of the United States of America. 2022 Jul 26 , 119 (30).
  8. Tuval A., Brilon Y., Azogy H., Moskovitz Y., Leshkowitz D., Salame T. M., Minden M. D., Tal P., Rotter V., Oren M., Kaushansky N. & Shlush L. I. (2022). Pseudo-mutant P53 is a unique phenotype of DNMT3Amutated pre-leukemia.  Haematologica. 2022 Nov , 107 (11):2548-2561.
  9. Goldsmith M., Barad S., Knafo M., Savidor A., Ben-Dor S., Brandis A., Mehlman T., Peleg Y., Albeck S., Dym O., Ben-Zeev E., Barbole R. S., Aharoni A. & Reich Z. (2022). Identification and characterization of the key enzyme in the biosynthesis of the neurotoxin β-ODAP in grass pea.  Journal of Biological Chemistry. 2022 May 1 , 298 (5).
  10. Turner M., Danino Y. M., Barshai M., Yacovzada N. S., Cohen Y., Olender T., Rotkopf R., Monchaud D., Hornstein E. & Orenstein Y. (2022). rG4detector, a novel RNA G-quadruplex predictor, uncovers their impact on stress granule formation.  Nucleic Acids Research. 2022 Nov 22 , 50 (20):11426-11441.
  11. Hassin O., Nataraj N. B., Shreberk-Shaked M., Aylon Y., Yaeger R., Fontemaggi G., Mukherjee S., Maddalena M., Avioz A., Iancu O., Mallel G., Gershoni A., Grosheva I., Feldmesser E., Ben-Dor S., Golani O., Hendel A., Blandino G., Kelsen D., Yarden Y. & Oren M. (2022). Different hotspot p53 mutants exert distinct phenotypes and predict outcome of colorectal cancer patients.  Nature Communications. 2022 Dec , 13 (1).
  12. Kim J. L., Ben-Dor S., Rosenfeld-Gur E. & Futerman A. H. (2022). A novel C-terminal DxRSDxE motif in ceramide synthases involved in dimer formation.  Journal of Biological Chemistry. 2022 Feb 1 , 298 (2).
  13. Fromm A., Schatz D., Ben-Dor S., Feldmesser E. & Vardi A. (2022). Complete Genome Sequence of Emiliania huxleyi Virus Strain M1, Isolated from an Induced E. huxleyi Bloom in Bergen, Norway.  Microbiology Resource Announcements. 2022 May , 11 (5).
  14. Kim J., Pewzner-Jung Y., Joseph T., Ben-Dor S. & Futerman A. H. (2022). Generation of a ceramide synthase 6 mouse lacking the DDRSDIE C-terminal motif.  PLoS ONE. 2022 Jul , 17 (7 July).
  15. Cohen M., Hertweck K., Itkin M., Malitsky S., Dassa B., Fischer A. M. & Fluhr R. (2022). Enhanced proteostasis, lipid remodeling, and nitrogen remobilization define barley flag leaf senescence.  Journal of Experimental Botany. 2022 Nov 2 , 73 (19):6816-6837.
  16. Abou Karam P., Goldian-Rosenheck I., Ziv T., Ben Ami H., Azuri I., Rivkin A., Kiper E., Rotkopf R., Cohen S. R., Torrecilhas A. C., Avinoam O., Rojas A., Morandi M. & Regev-Rudzki N. (2022). Malaria parasites release vesicle subpopulations with signatures of different destinations.  EMBO Reports. 2022 Jul 5 , 23 (7).
  17. Abou Karam P., Goldian-Rosenheck I., Ziv T., Ben Ami H., Azuri I., Rivkin A., Kiper E., Rotkopf R., Cohen S. R., Torrecilhas A. C., Avinoam O., Rojas A., Morandi M. & Regev-Rudzki N. (2022). Malaria parasites release vesicle subpopulations with signatures of different destinations.  EMBO Reports. 2022 Jul 5 , 23 (7).
  18. Stepka Z., Azuri I., Horwitz L. K., Chazan M. & Natalio F. A. (2022). Hidden signatures of early fire at Evron Quarry (1.0 to 0.8 Mya).  Proceedings of the National Academy of Sciences. 2022 Jun 21 , 119 (25).
  19. Furth N., Algranati D., Dassa B., Beresh O., Fedyuk V., Morris N., Kasper L. H., Jones D., Monje M., Baker S. J. & Shema E. (2022). H3-K27M-mutant nucleosomes interact with MLL1 to shape the glioma epigenetic landscape.  Cell Reports. 2022 May 17 , 39 (7).
  20. Kadouri N., Giladi T., Katz S., Hey J., Ben-Dor S., Damari G., Dassa B., Dobes J., Dieter W., Bähr M., Paulsen M., Haffner-Krausz R., Mall M. A., Plass C., Kafka Y. & Abramson J. (2022). Transcriptional regulation of the thymus master regulator Foxn1.  Science Immunology. 2022 Aug , 7 (74).