Bioinformatics: LSCF Publications

  1. Shemi A., Alcolombri U., Schatz D., Farstey V., Vincent F., Rotkopf R., Ben-Dor S., Frada M. J., Tawfik D. S. & Vardi A. (2021). Dimethyl sulfide mediates microbial predatorprey interactions between zooplankton and algae in the ocean.  Nature Microbiology. 2021 Nov , 6 (11):1357-1366.
  2. Shemi A., Alcolombri U., Schatz D., Farstey V., Vincent F., Rotkopf R., Ben-Dor S., Frada M. J., Tawfik D. S. & Vardi A. (2021). Dimethyl sulfide mediates microbial predatorprey interactions between zooplankton and algae in the ocean.  Nature Microbiology. 2021 Nov , 6 (11):1357-1366.
  3. Maddalena M., Mallel G., Nataraj N. B., Shreberk-Shaked M., Hassin O., Mukherjee S., Arandkar S., Rotkopf R., Kapsack A., Lambiase G., Pellegrino B., Ben-Isaac E., Golani O., Addadi Y., Hajaj E., Eilam R., Straussman R., Yarden Y., Lotem M. & Oren M. (2021). TP53 missense mutations in PDAC are associated with enhanced fibrosis and an immunosuppressive microenvironment.  Proceedings of the National Academy of Sciences of the United States of America. 2021 Apr 29 , 118 (23).
  4. Kazachkova Y., Zemach I., Panda S., Bocobza S., Vainer A., Rogachev I., Dong Y., Ben-Dor S., Veres D., Kanstrup C., Lambertz S. K., Crocoll C., Hu Y., Shani E., Michaeli S., Nour-Eldin H. H., Zamir D. & Aharoni A. (2021). The GORKY glycoalkaloid transporter is indispensable for preventing tomato bitterness.  Nature Plants. 2021 Apr , 7 (4):468-480.
  5. Feldmesser E., Ben-Dor S. & Vardi A. (2021). An Emiliania huxleyi pan-transcriptome reveals basal strain specificity in gene expression patterns.  Scientific Reports. 2021 Dec , 11 (1).
  6. Swain U., Friedlander G., Sehrawat U., Sarusiportuguez A., Rotkopf R., Ebert C., Pazelizur T., Dikstein R., Carell T., Geacintov N. E. & Livneh Z. (2021). Tent4a noncanonical poly(A) polymerase regulates dnadamage tolerance via multiple pathways that are mutated in endometrial cancer.  International Journal of Molecular Sciences. 2021 Jul 1 , 22 (13).
  7. Raz A., Dahan-Meir T., Melamed-Bessudo C., Leshkowitz D. & Levy A. A. (2021). Redistribution of Meiotic Crossovers Along Wheat Chromosomes by Virus-Induced Gene Silencing.  Frontiers in Plant Science. 2021 Feb 4 , 11 .
  8. Azuri I., Rosenhek-Goldian I., Regev-Rudzki N., Fantner G. & Cohen S. R. (2021). The role of convolutionsl neural networks in scanning probe microscopy: a review.  Beilstein Journal of Nanotechnology. 2021, 12 :878-901.
  9. Daniel E., Maksimainen M. M., Smith N., Ratas V., Biterova E., Murthy S. N., Tanvir Rahman M., Kiema T. R., Sridhar S., Cordara G., Dalwani S., Venkatesan R., Prilusky J., Dym O., Lehtio L., Kristian Koski M., Ashton A. W., Sussman J. L. & Wierenga R. K. (2021). IceBear: An intuitive and versatile web application for research-data tracking from crystallization experiment to PDB deposition.  Acta Crystallographica Section D: Structural Biology. 2021 Feb 1 , 77 :151-163.
  10. Mevorach T., Taler M., Dar S., Lebow M., Sapir I. S., Rotkopf R., Apter A., Fennig S., Chen A., Weizman A. & Amitai M. (2021). The relationship between the plasma proinflammatory cytokine levels of depressed/anxious children and their parents.  Scientific Reports. 2021 Dec , 11 (1).
  11. Graff van Creveld S., Ben-Dor S., Mizrachi A., Alcolombri U., Hopes A., Mock T., Rosenwasser S. & Vardi A. (2021). Biochemical Characterization of a Novel Redox-Regulated Metacaspase in a Marine Diatom.  Frontiers in Microbiology. 2021 Sept 8 , 12 .
  12. Fellus-Alyagor L., Biton I. E., Dafni H., Bochner F., Rotkopf R., Dekel N. & Neeman M. (2021). Prediction of Ovarian Follicular Dominance by MRI Phenotyping of Hormonally Induced Vascular Remodeling.  Frontiers in Medicine. 2021 Aug 20 , 8 .
  13. Grunwald Y., Wigoda N., Sade N., Yaaran A., Torne T., Gosa S. C., Moran N. & Moshelion M. (2021). Arabidopsis leaf hydraulic conductance is regulated by xylem sap pH, controlled, in turn, by a P-type H+-ATPase of vascular bundle sheath cells.  The Plant journal : for cell and molecular biology. 2021 Apr , 106 (2):301-313.
  14. Camargo S., Leshkowitz D., Dassa B., Mariscal V., Flores E., Stavans J. & Arbel-Goren R. (2021). Impaired cell-cell communication in the multicellular cyanobacterium Anabaena affects carbon uptake, photosynthesis, and the cell wall.  iScience. 2021 Jan 22 , 24 (1).
  15. Ulman A., Levin T., Dassa B., Javitt A., Kacen A., Shmueli M. D., Eisenberg-Lerner A., Sheban D., Fishllevich S., Levy E. D. & Merbl Y. (2021). Altered Protein Abundance and Localization Inferred from Sites of Alternative Modification by Ubiquitin and SUMO: Revealing new insights into protein function from Sites of Alternative Modifications (SAM).  Journal of Molecular Biology. 2021 Oct 15 , 433 (21).
  16. Ofir-Birin Y., Ben Ami Pilo H., Cruz Camacho A., Rudik A., Rivkin A., Revach O. Y., Nir N., Block Tamin T., Abou Karam P., Kiper E., Peleg Y., Nevo R., Solomon A., Havkin-Solomon T., Rojas A., Rotkopf R., Porat Z., Avni D., Schwartz E., Zillinger T., Hartmann G., Di Pizio A., Quashie N. B., Dikstein R., Gerlic M., Torrecilhas A. C., Levy C., Nolte-t Hoen E. N., Bowie A. G. & Regev-Rudzki N. (2021). Malaria parasites both repress host CXCL10 and use it as a cue for growth acceleration.  Nature Communications. 2021 Dec 1 , 12 (1).
  17. Dekel E., Yaffe D., Rosenhek-Goldian I., Ben-Nissan G., Ofir-Birin Y., Morandi M. I., Ziv T., Sisquella X., Pimentel M. A., Nebl T., Kapp E., Ohana Daniel Y., Karam P. A., Alfandari D., Rotkopf R., Malihi S., Temin T. B., Mullick D., Revach O. Y., Rudik A., Gov N. S., Azuri I., Porat Z., Bergamaschi G., Sorkin R., Wuite G. J., Avinoam O., Carvalho T. G., Cohen S. R., Sharon M. & Regev-Rudzki N. (2021). 20S proteasomes secreted by the malaria parasite promote its growth.  Nature Communications. 2021 Dec 1 , 12 (1).
  18. Dekel E., Yaffe D., Rosenhek-Goldian I., Ben-Nissan G., Ofir-Birin Y., Morandi M. I., Ziv T., Sisquella X., Pimentel M. A., Nebl T., Kapp E., Ohana Daniel Y., Karam P. A., Alfandari D., Rotkopf R., Malihi S., Temin T. B., Mullick D., Revach O. Y., Rudik A., Gov N. S., Azuri I., Porat Z., Bergamaschi G., Sorkin R., Wuite G. J., Avinoam O., Carvalho T. G., Cohen S. R., Sharon M. & Regev-Rudzki N. (2021). 20S proteasomes secreted by the malaria parasite promote its growth.  Nature Communications. 2021 Dec 1 , 12 (1).
  19. Camargo S., Leshkowitz D., Dassa B., Mariscal V., Flores E., Stavans J. & Arbel-Goren R. (2021). Impaired cell-cell communication in the multicellular cyanobacterium Anabaena affects carbon uptake, photosynthesis, and the cell wall.  iScience. 2021 Jan 22 , 24 (1).
  20. Shreberk-Shaked M., Dassa B., Sinha S., Di Agostino S., Azuri I., Mukherjee S., Aylon Y., Blandino G., Ruppin E. & Oren M. (2020). A Division of Labor between YAP and TAZ in Non-Small Cell Lung Cancer.  Cancer Research. 2020 Oct 1 , 80 (19):4145-4157.