Bioinformatics: LSCF Publications

  1. Benjamin A., Kuperman Y., Eren N., Rotkopf R., Amitai M., Rossman H., Shilo S., Meir T., Keshet A., Nuttman-Shwartz O., Segal E. & Chen A. (2021). Stress-related emotional and behavioural impact following the first COVID-19 outbreak peak.  Molecular Psychiatry. 2021 Nov , 26 (11):6149-6158.
  2. Raz A., Dahan-Meir T., Melamed-Bessudo C., Leshkowitz D. & Levy A. A. (2021). Redistribution of Meiotic Crossovers Along Wheat Chromosomes by Virus-Induced Gene Silencing.  Frontiers in Plant Science. 2021 Feb 4 , 11 .
  3. Daniel E., Maksimainen M. M., Smith N., Ratas V., Biterova E., Murthy S. N., Tanvir Rahman M., Kiema T. R., Sridhar S., Cordara G., Dalwani S., Venkatesan R., Prilusky J., Dym O., Lehtio L., Kristian Koski M., Ashton A. W., Sussman J. L. & Wierenga R. K. (2021). IceBear: An intuitive and versatile web application for research-data tracking from crystallization experiment to PDB deposition.  Acta Crystallographica Section D: Structural Biology. 2021 Feb 1 , 77 (2):151-163.
  4. Soll M., Goldshtein H., Rotkopf R., Russek-Blum N. & Gross Z. (2021). A synthetic sod/catalase mimic compound for the treatment of als.  Antioxidants. 2021 Jun , 10 (6).
  5. Doron E., Koppel I., Abraham O., Rishal I., Smith T. P., Buchanan C. N., Sahoo P. K., Kadlec J., Oses-Prieto J. A., Kawaguchi R., Alber S., Zahavi E. E., Di Matteo P., Di Pizio A., Song D. A., Okladnikova N., Gordon D., Ben-Dor S., Haffner-Krausz R., Coppola G., Burlingame A. L., Jungwirth P., Twiss J. L. & Fainzilber M. (2021). The glycine arginine-rich domain of the RNA-binding protein nucleolin regulates its subcellular localization.  EMBO Journal. 2021 Oct 18 , 40 (20).
  6. Mevorach T., Taler M., Dar S., Lebow M., Sapir I. S., Rotkopf R., Apter A., Fennig S., Chen A., Weizman A. & Amitai M. (2021). The relationship between the plasma proinflammatory cytokine levels of depressed/anxious children and their parents.  Scientific Reports. 2021 Dec , 11 (1).
  7. Camargo S., Leshkowitz D., Dassa B., Mariscal V., Flores E., Stavans J. & Arbel-Goren R. (2021). Impaired cell-cell communication in the multicellular cyanobacterium Anabaena affects carbon uptake, photosynthesis, and the cell wall.  iScience. 2021 Jan 22 , 24 (1).
  8. Ofir-Birin Y., Ben Ami Pilo H., Camacho A. C., Rudik A., Rivkin A., Revach O., Nir N., Tamin T. B., Karam P. A., Kiper E., Peleg Y., Nevo R., Solomon A., Havkin-Solomon T., Rojas A., Rotkopf R., Porat Z., Avni D., Schwartz E., Zillinger T., Hartmann G., Di Pizio A., Ben Quashie N., Dikstein R., Gerlic M., Torrecilhas A. C., Levy C., Hoen E. N. M. N., Bowie A. G. & Regev-Rudzki N. (2021). Malaria parasites both repress host CXCL10 and use it as a cue for growth acceleration.  Nature Communications. 2021 Aug 11 , 12 (1).
  9. Shemi A., Alcolombri U., Schatz D., Farstey V., Vincent F., Rotkopf R., Ben-Dor S., Frada M. J., Tawfik D. S. & Vardi A. (2021). Dimethyl sulfide mediates microbial predatorprey interactions between zooplankton and algae in the ocean.  Nature Microbiology. 2021 Nov , 6 (11):1357-1366.
  10. Shemi A., Alcolombri U., Schatz D., Farstey V., Vincent F., Rotkopf R., Ben-Dor S., Frada M. J., Tawfik D. S. & Vardi A. (2021). Dimethyl sulfide mediates microbial predatorprey interactions between zooplankton and algae in the ocean.  Nature Microbiology. 2021 Nov , 6 (11):1357-1366.
  11. Camargo S., Leshkowitz D., Dassa B., Mariscal V., Flores E., Stavans J. & Arbel-Goren R. (2021). Impaired cell-cell communication in the multicellular cyanobacterium Anabaena affects carbon uptake, photosynthesis, and the cell wall.  iScience. 2021 Jan 22 , 24 (1).
  12. Azuri I., Rosenhek-Goldian I., Regev-Rudzki N., Fantner G. & Cohen S. R. (2021). The role of convolutionsl neural networks in scanning probe microscopy: a review.  Beilstein Journal of Nanotechnology. 2021 Aug 13 , 12 :878-901.
  13. Maddalena M., Mallel G., Nataraj N. B., Shreberk-Shaked M., Hassin O., Mukherjee S., Arandkar S., Rotkopf R., Kapsack A., Lambiase G., Pellegrino B., Ben-Isaac E., Golani O., Addadi Y., Hajaj E., Eilam R., Straussman R., Yarden Y., Lotem M. & Oren M. (2021). TP53 missense mutations in PDAC are associated with enhanced fibrosis and an immunosuppressive microenvironment.  Proceedings of the National Academy of Sciences. 2021 Jun 4 , 118 (23).
  14. Fellus-Alyagor L., Biton I. E., Dafni H., Bochner F., Rotkopf R., Dekel N. & Neeman M. (2021). Prediction of Ovarian Follicular Dominance by MRI Phenotyping of Hormonally Induced Vascular Remodeling.  Frontiers in Medicine. 2021 Aug 20 , 8 .
  15. Dekel E., Yaffe D., Rosenhek-Goldian I., Ben-Nissan G., Ofir-Birin Y., Morandi M. I., Ziv T., Sisquella X., Pimentel M. A., Nebl T., Kapp E., Ohana Daniel Y., Karam P. A., Alfandari D., Rotkopf R., Malihi S., Temin T. B., Mullick D., Revach O. Y., Rudik A., Gov N. S., Azuri I., Porat Z., Bergamaschi G., Sorkin R., Wuite G. J., Avinoam O., Carvalho T. G., Cohen S. R., Sharon M. & Regev-Rudzki N. (2021). 20S proteasomes secreted by the malaria parasite promote its growth.  Nature Communications. 2021 Feb 19 , 12 (1).
  16. Graff van Creveld S., Ben-Dor S., Mizrachi A., Alcolombri U., Hopes A., Mock T., Rosenwasser S. & Vardi A. (2021). Biochemical Characterization of a Novel Redox-Regulated Metacaspase in a Marine Diatom.  Frontiers in Microbiology. 2021 Sept 8 , 12 .
  17. Feldmesser E., Ben-Dor S. & Vardi A. (2021). An Emiliania huxleyi pan-transcriptome reveals basal strain specificity in gene expression patterns.  Scientific Reports. 2021 Dec , 11 (1).
  18. Assaraf E., Blecher R., Heinemann-Yerushalmi L., Krief S., Carmel Vinestock R., Biton I. E., Brumfeld V., Rotkopf R., Avisar E., Agar G. & Zelzer E. (2020). Piezo2 expressed in proprioceptive neurons is essential for skeletal integrity.  Nature Communications. 2020 Jun 23 , 11 (1).
  19. Zaidman D., Prilusky J. & London N. (2020). PRosettaC: Rosetta based modeling of PROTAC mediated ternary complexes: Rosetta based modeling of PROTAC mediated ternary complexes.  Journal of Chemical Information and Modeling. 2020 Oct 26 , 60 (10):4894-4903.
  20. Cohen B., Tempelhof H., Raz T., Oren R., Nicenboim J., Bochner F., Even R., Jelinski A., Eilam R., Ben-Dor S., Adaddi Y., Golani O., Lazar S., Yaniv K. & Neeman M. (2020). BACH family members regulate angiogenesis and lymphangiogenesis by modulating VEGFC expression.  Life Science Alliance. 2020 Apr , 3 (4).