Advanced Sequencing Technlogies Publications

  1. Aleksandra Deczkowska; Hadas Keren-Shaul; Assaf Weiner; Marco Colonna; Michal Schwartz; Ido Amit (2018). Disease-Associated Microglia: A Universal Immune Sensor of Neurodegeneration.  Cell. 2018 May , 173 (5):1073-1081.
  2. Oren Tzfadia; Samuel Bocobza; Jonas Defoort; Efrat Almekias-Siegl; Sayantan Panda; Matan Levy; Veronique Storme; Stephane Rombauts; Diego Adhemar Jaitin; Hadas Keren-Shaul; Yves Van de Peer; Asaph Aharoni (2018). The 'TranSeq' 3'-end sequencing method for high-throughput transcriptomics and gene space refinement in plant genomes.  Plant Journal. 2018 Jan , .
  3. Diana Varol; Alexander Mildner; Thomas Blank; Anat Shemer; Neta Barashi; Simon Yona; Eyal David; Sigalit Boura-Halfon; Yifat Segal-Hayoun; Louise Chappell-Maor; Hadas Keren-Shaul; Dena Leshkowitz; Eran Hornstein; Martin Fuhrmann; Ido Amit; Nicola Maggio; Marco Prinz; Steffen Jung (2017). Dicer Deficiency Differentially Impacts Microglia of the Developing and Adult Brain.  Immunity. 2017 Jun , 46 (6):1030-+.
  4. Hadas Keren-Shaul; Amit Spinrad; Assaf Weiner; Orit Matcovitch-Natan; Raz Dvir-Szternfeld; Tyler K. Ulland; Eyal David; Kuti Baruch; David Lara-Astaiso; Beata Toth; Shalev Itzkovitz; Marco Colonna; Michal Schwartz; Ido Amit (2017). A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease.  Cell. 2017 Jun , 169 (7):1276-+.
  5. Amy Guillaumet-Adkins; Gustavo Rodriguez-Esteban; Elisabetta Mereu; Maria Mendez-Lago; Diego A. Jaitin; Alberto Villanueva; August Vidal; Alex Martinez-Marti; Enriqueta Felip; Ana Vivancos; Hadas Keren-Shaul; Simon Heath; Marta Gut; Ido Amit; Ivo Gut; Holger Heyn (2017). Single-cell transcriptome conservation in cryopreserved cells and tissues.  Genome Biology. 2017 Mar , 18 .
  6. Meital Gury-BenAri; Christoph Alexander Thaiss; Nicolas Serafini; Deborah R Winter; Amir Giladi; Astiaso, David Lara Astiaso; Maayan Levy; Tomer Meir Salame; Assaf Weiner; Eyal David; Hagit Shapiro; Mally Dori-Bachash; Meirav Pevsner-Fischer; Vivas, Erika Lorenzo Vivas; Hadas Keren-Shaul; Franziska Paul; Alon Harmelin; Gerard Eberl; Shalev Itzkovitz; Amos Tanay; Santo, James P Di Santo; Eran Elinav; Ido Amit (2016). The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome..  Cell. 2016 Aug , 166 (5):1231-1246.e13.
  7. Diego Adhemar Jaitin; Assaf Weiner; Ido Yofe; Astiaso, David Lara Astiaso; Hadas Keren-Shaul; Eyal David; Tomer Meir Salame; Amos Tanay; Oudenaarden, Alexander van Oudenaarden; Ido Amit (2016). Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.  Cell. 2016 Dec , 167 (7):1883-+.
  8. Orit Matcovitch-Natan; Deborah R Winter; Amir Giladi; Aguilar, Stephanie Vargas Aguilar; Amit Spinrad; Sandrine Sarrazin; Hila Ben-Yehuda; Eyal David; Gonzalez, Fabiola Zelada Gonzalez; Pierre Perrin; Hadas Keren-Shaul; Meital Gury; David Lara-Astaiso; Christoph Alexander Thaiss; Merav Cohen; Halpern, Keren Bahar Halpern; Kuti Baruch; Aleksandra Deczkowska; Vivas, Erika Lorenzo Vivas; Shalev Itzkovitz; Eran Elinav; Michael H Sieweke; Michal Schwartz; Ido Amit (2016). Microglia development follows a stepwise program to regulate brain homeostasis..  Science (New York, N.Y.). 2016 Jun , 353 (6301):aad8670.
  9. Diego Adhemar Jaitin; Hadas Keren-Shaul; Naama Elefant; Ido Amit (2015). Each cell counts: Hematopoiesis and immunity research in the era of single cell genomics.  Seminars in Immunology. 2015 Feb , 27 (1):67-71.
  10. Orit Matcovitch; Merav Cohen; Eyal David; Zohar Barnettitzhaki; Hadas Keren-Shaul; Ronnie Blecher-gonen; Diego Adhemar Jaitin; Antonio Sica; Ido Amit; Michal Schwartz (2014). The central nervous system microenvironment imprints microglial inability to switch from pro- to anti-inflammatory phenotype.  Journal of Neuroimmunology. 2014 Oct , 275 (2-Jan):162-162.
  11. Diego Adhemar Jaitin; Ephraim Kenigsberg; Hadas Keren-Shaul; Naama Elefant; Franziska Paul; Irina Zaretsky; Alexander Mildner; Nadav Cohen; Steffen Jung; Amos Tanay; Ido Amit (2014). Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types.  Science. 2014 Feb , 343 (6172):776-779.
  12. Yonit Lavin; Deborah Winter; Ronnie Blecher-Gonen; Eyal David; Hadas Keren-Shaul; Miriam Merad; Steffen Jung; Ido Amit (2014). Tissue-Resident Macrophage Enhancer Landscapes Are Shaped by the Local Microenvironment.  Cell. 2014 Dec , 159 (6):1312-1326.
  13. Zeev Altboum; Y Steuerman; Eyal David; Itzhaki, Zohar Barnett Itzhaki; Liran Valadarsky; Hadas Keren-Shaul; T Meningher; E Mendelson; M Mandelboim; I Gat-Viks; Ido Amit (2014). Digital cell quantification identifies global immune cell dynamics during influenza infection.  Molecular Systems Biology. 2014 Feb , 10 (2).
  14. Astiaso, David Lara Astiaso; Assaf Weiner; Vivas, Erika Lorenzo Vivas; Irina Zaretsky; Diego Adhemar Jaitin; Eyal David; Hadas Keren-Shaul; Alexander Mildner; Deborah Winter; Steffen Jung; Nir Friedman; Ido Amit (2014). Chromatin state dynamics during blood formation.  Science. 2014 Aug , 345 (6199):943-949.
  15. Merav Cohen; Orit Matcovitch; Eyal David; Itzhaki, Zohar Barnett Itzhaki; Hadas Keren-Shaul; Ronnie Blecher-Gonen; Diego Adhemar Jaitin; Antonio Sica; Ido Amit; Michal Schwartz (2014). Chronic exposure to TGF beta 1 regulates myeloid cell inflammatory response in an IRF7-dependent manner.  EMBO Journal. 2014 Dec , 33 (24):2906-2921.