Mass Cytometry Publications

  1. Croese T., Abellanas M. A., Polonsky H., Arad M., Peralta Ramos J. M., Androsova Y., Riccitelli S., Medina S., Palmas F., Strobel R., Castellani G., Kviatcovsky D., Phoebeluc-Colaiuta S., Adam M., Murad S., Partney H., Kitsberg D., Dieter A., Salame T. M., Brandis A., Mehlman T., Singer O., Rivlin-Etzion M., Wiegert S., Shaul Y., Kobiler O., Yizhar O., Habib N. & Schwartz M. (2026). Disruption of the brain-spleen axis impairs monocyte-microglia communication and accelerates disease progression in a mouse model of amyloidosis.  Nature Communications. 2026 Aug 4 , 17 .
  2. Rachmian-Cooper N., Shmulevich R., Akiva H., Pokorna S., Dassa B., Cherqui U., Malitsky S., Itkin M., Kliger B. A., Goliand I., Salame T. M. & Krizhanovsky V. (2026). Senescent cells accumulate lipid droplets.  Aging. 2026 Jul 1 , 18 :768-786.
  3. Nathan N., Paparoditis P., Sarusi-Portuguez A., Stoler-Barak L., Horn H. M., Milo I., Mazor R. D., Levy-Barda A., Yanichkin N., Borcherding N., Blecher-Gonen R., Ronen R., Nachman I. B., Goliand I., Fellus-Alyagor L., Salame T. M., Sagi I., Siloni G. H., Gross M., Tenenbaum A., Kent I., Keren L., Raban O., Eitan R. & Shulman Z. (2026). Tumor-draining lymph nodes in ovarian cancer lack germinal centers but harbor tumor-reactive memory B cells clonally linked to intra-tumoral B cells.  Immunity. 2026 Jun 9 , 59 (6):1743-1757.e10.
  4. Ben-Uri R., Ben Shabat L., Shainshein D., Bar-Tal O., Bussi Y., Maimon N., Keidar Haran T., Milo I., Goliand I., Addadi Y., Salame T. M., Rochwarger A., Schürch C. M., Bagon S., Elhanani O. & Keren L. (2026). High-dimensional imaging using combinatorial channel multiplexing and deep learning.  . 2026 Feb , 44 (2):233-246.
  5. Ben-Uri R., Ben Shabat L., Shainshein D., Bar-Tal O., Bussi Y., Maimon N., Keidar Haran T., Milo I., Goliand I., Addadi Y., Salame T., Rochwarger A., Schürch C. M., Bagon S., Elhanani O. & Keren L. (2025). Escalating High-dimensional Imaging using Combinatorial Channel Multiplexing and Deep Learning.  BioRxiv. 2025 Jan 7 , .
  6. Griess O., Furth N., Harpaz N., Di Bernardo N., Salame T. M., Dassa B., Karagiannidis I., Isshiki Y., Gross M., Melnick A. M., Béguelin W., Ron G. & Shema E. (2025). Mutant EZH2 alters the epigenetic network and increases epigenetic heterogeneity in B cell lymphoma.  PLOS Biology. 2025 Jun , 23 (6 ).
  7. Peralta Ramos J. M., Castellani G., Kviatcovsky D., Croese T., Tsitsou-Kampeli A., Burgaletto C., Abellanas M. A., Cahalon L., Phoebeluc Colaiuta S., Salame T. M., Kuperman Y., Savidor A., Itkin M., Malitsky S., Ovadia S., Ferrera S., Kalfon L., Kadmani S., Samra N., Paz R., Rokach L., Furlan R., Aharon-Peretz J., Falik-Zaccai T. C. & Schwartz M. (2025). Targeting CD38 immunometabolic checkpoint improves metabolic fitness and cognition in a mouse model of Alzheimers disease.  Nature Communications. 2025 Apr 20 , 16 .
  8. Cinnamon E., Stein I., Zino E., Rabinovich S., Shovman Y., Schlesinger Y., Salame T. M., Reich-Zeliger S., Albrecht T., Roessler S., Schirmacher P., Lotem M., Ben-Neriah Y., Parnas O. & Pikarsky E. (2025). RORc-expressing immune cells negatively regulate tertiary lymphoid structure formation and support their pro-tumorigenic functions.  Journal of Hepatology. 2025 Jun , 82 (6):1050-1067.
  9. Furth N., Cohen N., Spitzer A., Salame T. M., Dassa B., Mehlman T., Brandis A., Moussaieff A., Friedmann-Morvinski D., Castro M. G., Fortin J., Suvà M. L., Tirosh I., Erez A., Ron G. & Shema E. (2025). Oncogenic IDH1mut drives robust loss of histone acetylation and increases chromatin heterogeneity.  Proceedings of the National Academy of Sciences - PNAS. 2025 Jan 7 , 122 (1).
  10. Valenti R., David Y., Edilbi D., Dubreuil B., Boshnakovska A., Asraf Y., Salame T. M., Sass E., Rehling P. & Schuldiner M. (2025). A proteome-wide yeast degron collection for the dynamic study of protein function.  Journal of Cell Biology. 2025 Feb 3 , 224 (2).
  11. Azulay N., Milo I., Bussi Y., Ben-Uri R., Haran T. K., Eldar M., Elhanani O., Harnik Y., Yakubovsky O., Nachmany I., Salame T., Wartenberg M., Bertheau P., Michonneau D., Socie G. & Keren L. (2025). A spatial atlas of human gastrointestinal acute GVHD reveals epithelial and immune dynamics underlying disease pathophysiology.  Science Translational Medicine. 2025 Nov 5 , 17 (823).
  12. Shvefel S. C., Pai J. A., Cao Y., Pal L. R., Bartok O., Levy R., Zemanek M. J., Weller C., Herzog E., Yao W., Hiam-Galvez K. J., Cheng K., Yin Y., Du P. P., Raposo C. J., Gumpert N., Welti M., Martínez Gómez J. M., Sella F., Yakubovich E., Orr I., Ben-Dor S., Oren R., Fellus-Alyagor L., Golani O., Brenner O. J., Salame T. M., Zerbib M., Goliand I., Ranmar D., Savchenko I., Ketrarou N., Schäffer A. A., Dahan R., Levesque M. P., Ruppin E., Satpathy A. T. & Samuels Y. (2025). Temporal Genomic Analysis of Homogeneous Tumor Models Reveals Key Regulators of Immune Evasion in Melanoma.  Cancer Discovery. 2025 Mar 1 , 15 (3):553-577.
  13. Adir I., Sochen C., Menachem A. H., Lebon S., Toval B., Holiar V., Davidzohn N., Salame T., Rosenhek-Goldian I., Savickas S., Sabino F., Solomonov I., Auf dem Keller U., Biton M. & Sagi I. (2025). Persistent ECM Scarring Reprograms Intestinal Stem Cells to Drive Chronic Inflammation.  BioRxiv. 2025 Jun 9 , .
  14. Amitay Y., Milo I., Keidar Haran T., Deis S., Truzman G., Elhanani O., Salame T., Azimov M., Stein I., Cohen J. E., Lotem M., Pikarsky E. & Keren L. (2024). Immune organization in sentinel lymph nodes of melanoma patients is prognostic of distant metastases.  BioRxiv. 2024 Nov 26 , .
  15. Majewska J., Agrawal A., Mayo A., Roitman L., Chatterjee R., Sekeresova Kralova J., Landsberger T., Katzenelenbogen Y., Meir-Salame T., Hagai E., Sopher I., Perez-Correa J. F., Wagner W., Maimon A., Amit I., Alon U. & Krizhanovsky V. (2024). p16-dependent increase of PD-L1 stability regulates immunosurveillance of senescent cells.  Nature Cell Biology. 2024 Aug , 26 (8):1336-1345.
  16. Simoni-Nieves A., Lindzen M., Giri S., Gupta N., Chatterjee R., Selvadurai B. R., Van Daele M., Love D., Haga Y., Romaniello D., Salame T. M., Zerbib M., Oren R., Tsutsumi Y., Lauriola M., Marrocco I. & Yarden Y. (2024). A bispecific antibody targeting EGFR and AXL delays resistance to osimertinib.  Cell Reports Medicine. 2024 Sept 17 , 5 (9).
  17. Rachmian N., Medina S., Cherqui U., Akiva H., Deitch D., Edilbi D., Croese T., Salame T. M., Ramos J. M. P., Cahalon L., Krizhanovsky V. & Schwartz M. (2024). Identification of senescent, TREM2-expressing microglia in aging and Alzheimers disease model mouse brain.  Nature Neuroscience. 2024 Jun , 27 (6):1116-1124.
  18. Nachmany I., Nevo S., Edelheit S., Sarusi-Portuguez A., Friedlander G., Salame T. M., Pavlov V., Yakubovsky O. & Pencovich N. (2024). Myeloid derived suppressor cells mediate hepatocyte proliferation and immune suppression during liver regeneration following resection.  Genes and Immunity. 2024 Dec , 25 (6):483-491.
  19. Aylon Y., Furth N., Mallel G., Friedlander G., Nataraj N. B., Dong M., Hassin O., Zoabi R., Cohen B., Drendel V., Salame T. M., Mukherjee S., Harpaz N., Johnson R., Aulitzky W. E., Yarden Y., Shema E. & Oren M. (2023). Author Correction: Breast cancer plasticity is restricted by a LATS1-NCOR1 repressive axis (doi 10.1038/s41467-022-34863-9 , 28 Nov, 2022).  Nature Communications. 2023 Jan 10 , 14 (1).
  20. Suzzi S., Croese T., Ravid A., Gold O., Clark A. R., Medina S., Kitsberg D., Adam M., Vernon K. A., Kohnert E., Shapira I., Malitsky S., Itkin M., Brandis A., Mehlman T., Salame T. M., Colaiuta S. P., Cahalon L., Slyper M., Greka A., Habib N. & Schwartz M. (2023). N-acetylneuraminic acid links immune exhaustion and accelerated memory deficit in diet-induced obese Alzheimers disease mouse model.  Nature Communications. 2023 Mar 9 , 14 (1).