Bioinformatics: LSCF Publications

  1. Ben Ami Pilo H., Khan Khilji S., Lühle J., Biskup K., Levy Gal B., Rosenhek Goldian I., Alfandari D., Revach O., Kiper E., Morandi M. I., Rotkopf R., Porat Z., Blanchard V., Seeberger P. H., Regev‐Rudzki N. & Moscovitz O. (2022). Sialylated N‐glycans mediate monocyte uptake of extracellular vesicles secreted from Plasmodium falciparum‐infected red blood cells.  Journal of Extracellular Biology. 2022 Feb , 1 (2).
  2. Abramson J., Kadouri N., Giladi T., Katz S., Hey J., Ben-Dor S., Damari G., Dassa B., Dobes J., Dieter W., Bähr M., Paulsen M., Haffner-Krausz R., Mall M. A., Plass C., Kafka Y. & Abramson J. (2022). Transcriptional regulation of the thymus master regulator Foxn1.  Science immunology. 2022 Aug , 7 (74).
  3. , Dey S., Levy E. D., London N., Prilusky J. & Zaidman D. (2022). PDBe-KB: collaboratively defining the biological context of structural data.  Nucleic Acids Research. 2022 Jan , 50 (D1):D534-D542.
  4. Fromm A., Schatz D., Ben-Dor S., Feldmesser E. & Vardi A. (2022). Complete Genome Sequence of Emiliania huxleyi Virus Strain M1, Isolated from an Induced E. huxleyi Bloom in Bergen, Norway.  Microbiology Resource Announcements. 2022 Apr , 11 (5).
  5. Furth N., Algranati D., Dassa B., Beresh O., Fedyuk V., Morris N., Kasper L. H., Jones D., Monje M., Baker S. J. & Shema E. (2022). H3-K27M-mutant nucleosomes interact with MLL1 to shape the glioma epigenetic landscape.  Cell reports (Cambridge). 2022 May , 39 (7).
  6. Abramson J., Kadouri N., Giladi T., Katz S., Hey J., Ben-Dor S., Damari G., Dassa B., Dobes J., Dieter W., Bähr M., Paulsen M., Haffner-Krausz R., Mall M. A., Plass C., Kafka Y. & Abramson J. (2022). Transcriptional regulation of the thymus master regulator Foxn1.  Science immunology. 2022 Aug , 7 (74).
  7. Leshkowitz D., Kedmi M., Fried Y., Pilzer D., Keren-Shaul H., Ainbinder E. & Dassa B. (2022). Exploring differential exon usage via short- and long-read RNA sequencing strategies.  Open Biology. 2022 Sept , 12 (9).
  8. Alfandari D., Ben Ami Pilo H., Abou Karam P., Dagan O., Joubran C., Rotkopf R., Regev-Rudzki N. & Porat Z. (2022). Monitoring Distribution Dynamics of EV RNA Cargo Within Recipient Monocytes and Macrophages.  Frontiers in Cellular and Infection Microbiology. 2022 Jan , 11 .
  9. Fromm A., Schatz D., Ben-Dor S., Feldmesser E. & Vardi A. (2022). Complete Genome Sequence of Emiliania huxleyi Virus Strain M1, Isolated from an Induced E. huxleyi Bloom in Bergen, Norway.  Microbiology Resource Announcements. 2022 Apr , 11 (5).
  10. Leshkowitz D., Kedmi M., Fried Y., Pilzer D., Keren-Shaul H., Ainbinder E. & Dassa B. (2022). Exploring differential exon usage via short- and long-read RNA sequencing strategies.  Open Biology. 2022 Sept , 12 (9).
  11. Dey S., Prilusky J. & Levy E. D. (2022). QSalignWeb: A Server to Predict and Analyze Protein Quaternary Structure.  Frontiers in Molecular Biosciences. 2022 Jan , 8 .
  12. Stepka Z., Azuri I., Horwitz L. K., Chazan M. & Natalio F. A. (2022). Hidden signatures of early fire at Evron Quarry (1.0 to 0.8 Mya).  Proceedings of the National Academy of Sciences of the United States of America. 2022 Jun , 119 (25).
  13. Hassin O., Nataraj N. B., Shreberk-Shaked M., Aylon Y., Yaeger R., Fontemaggi G., Mukherjee S., Maddalena M., Avioz A., Iancu O., Mallel G., Gershoni A., Grosheva I., Feldmesser E., Ben-Dor S., Golani O., Hendel A., Blandino G., Kelsen D., Yarden Y. & Oren M. (2022). Different hotspot p53 mutants exert distinct phenotypes and predict outcome of colorectal cancer patients.  Nature Communications. 2022 May , 13 (1).
  14. , Eitan C., Siany A., Barkan E., Olender T., Yanowski E., Marmor-Kollet H., Chapnik E., Ainbinder E., Ben-Dor S., Segal E. & Hornstein E. (2022). Whole-genome sequencing reveals that variants in the Interleukin 18 Receptor Accessory Protein 3'UTR protect against ALS.  Nature Neuroscience. 2022 Mar , 25 (4):433-445.
  15. Abou Karam P., Goldian-Rosenheck I., Ziv T., Ben Ami H., Azuri I., Rivkin A., Kiper E., Rotkopf R., Cohen S. R., Torrecilhas A. C., Avinoam O., Rojas A., Morandi M. & Regev-Rudzki N. (2022). Malaria parasites release vesicle subpopulations with signatures of different destinations.  EMBO Reports. 2022 Jun , .
  16. Hassin O., Nataraj N. B., Shreberk-Shaked M., Aylon Y., Yaeger R., Fontemaggi G., Mukherjee S., Maddalena M., Avioz A., Iancu O., Mallel G., Gershoni A., Grosheva I., Feldmesser E., Ben-Dor S., Golani O., Hendel A., Blandino G., Kelsen D., Yarden Y. & Oren M. (2022). Different hotspot p53 mutants exert distinct phenotypes and predict outcome of colorectal cancer patients.  Nature Communications. 2022 May , 13 (1).
  17. Haimon Z., Frumer G. R., Kim J., Trzebanski S., Haffner-Krausz R., Ben-Dor S., Porat Z., Muschaweckh A., Chappell-Maor L., Boura-Halfon S., Korn T. & Jung S. (2022). Cognate microglia–T cell interactions shape the functional regulatory T cell pool in experimental autoimmune encephalomyelitis pathology.  Nature Immunology. 2022 Dec , .
  18. Tuval A., Brilon Y., Azogy H., Moskovitz Y., Leshkowitz D., Salame T. M., Minden M. D., Tal P., Rotter V., Oren M., Kaushansky N. & Shlush L. I. (2022). Pseudo-mutant P53 is a unique phenotype of DNMT3A -mutated pre-leukemia.  Haematologica (Roma). 2022 Feb , 107 (11).
  19. Abou Karam P., Goldian-Rosenheck I., Ziv T., Ben Ami H., Azuri I., Rivkin A., Kiper E., Rotkopf R., Cohen S. R., Torrecilhas A. C., Avinoam O., Rojas A., Morandi M. & Regev-Rudzki N. (2022). Malaria parasites release vesicle subpopulations with signatures of different destinations.  EMBO Reports. 2022 Jun , .
  20. Sehrawat U., Haimov O., Weiss B., Tamarkin-Ben Harush A., Ashkenazi S., Plotnikov A., Noiman T., Leshkowitz D., Stelzer G. & Dikstein R. (2022). Inhibitors of eIF4G1-eIF1 uncover its regulatory role of ER/UPR stress-response genes independent of eIF2α-phosphorylation.  Proceedings of the National Academy of Sciences - PNAS. 2022 Jul , 119 (30).