Bioinformatics Publications

  1. Sigal Kfir; Raghavendra Basavaraja; Noa Wigoda; Shifra Ben-Dor; Irit Orr; Rina Meidan (2018). Genomic profiling of bovine corpus luteum maturation.  PLoS One. 2018 Mar , 13 (3).
  2. Mareen Engel; Carola Eggert; Paul M. Kaplick; Matthias Eder; Simone Roeh; Lisa Tietze; Christian Namendorf; Janine Arloth; Peter Weber; Monika Rex-Haffner; Shay Geula; Mira Jakovcevski; Jacob H. Hanna; Dena Leshkowitz; Manfred Uhr; Carsten T. Wotjak; Mathias V. Schmidt; Jan M. Deussing; Elisabeth B. Binder; Alon Chen (2018). The Role of m(6)A/m-RNA Methylation in Stress Response Regulation.  Neuron. 2018 Jul , 99 (2):389-+.
  3. Rotem Tidhar; Iris D. Zelnik; Giora Volpert; Shifra Ben-Dor; Samuel Kelly; Alfred H. Merrill; Anthony H. Futerman (2018). Eleven residues determine the acyl chain specificity of ceramide synthases.  Journal of Biological Chemistry. 2018 Jan , 293 (25):9912-9921.
  4. Lihi Adler-Abramovich; Zohar A. Arnon; XiaoMeng Sui; Ido Azuri; Hadar Cohen; Oded Hod; Leeor Kronik; Linda J. W. Shimon; H. Daniel Wagner; Ehud Gazit (2018). Bioinspired Flexible and Tough Layered Peptide Crystals.  Advanced Materials. 2018 Feb , 30 (5).
  5. Gili Ezra-Nevo; Francesca Prestori; Francesca Locatelli; Teresa Soda; Michiel M. ten Brinke; Mareen Engel; Henk-Jan Boele; Laura Botta; Dena Leshkowitz; Assaf Ramot; Michael Tsoory; Inbal E. Biton; Jan Deussing; Egidio D'Angelo; Chris I. De Zeeuw; Alon Chen (2018). Cerebellar Learning Properties Are Modulated by the CRF Receptor.  Journal of Neuroscience. 2018 Jul , 38 (30):6751-6765.
  6. Michal Polonsky; Jacob Rimer; Amos Kern-Perets; Irina Zaretsky; Stav Miller; Chamutal Bornstein; Eyal David; Naama Meira Kopelman; Gil Stelzer; Ziv Porat; Benjamin Chain; Nir Friedman (2018). Induction of CD4 T cell memory by local cellular collectivity.  Science. 2018 Jun , 360 (6394):1201-+.
  7. Ido Azuri; Anna Hirsch; Anthony M. Reilly; Alexandre Tkatchenko; Shai Kendler; Oded Hod; Leeor Kronik (2018). Terahertz spectroscopy of 2,4,6-trinitrotoluene molecular solids from first principles.  Beilstein Journal of Organic Chemistry. 2018 Feb , 14 :381-388.
  8. Yochai Wolf; Anat Shemer; Liron Levy-Efrati; Mor Gross; Jung-Seok Kim; Adrien Engel; Eyal David; Louise Chappell-Maor; Jonathan Grozovski; Ron Rotkopf; Inbal Biton; Raya Eilam-Altstadter; Steffen Jung (2018). Microglial MHC class II is dispensable for experimental autoimmune encephalomyelitis and cuprizone-induced demyelination.  European Journal of Immunology. 2018 Aug , 48 (8):1308-1318.
  9. Irina V. Kabakova; Ido Azuri; Zhuoying Chen; Pabitra K. Nayak; Henry J. Snaith; Leeor Kronik; Carl Paterson; Artem A. Bakulin; David A. Egger (2018). The effect of ionic composition on acoustic phonon speeds in hybrid perovskites from Brillouin spectroscopy and density functional theory.  Journal of Materials Chemistry C. 2018 Apr , 6 (15):3861-3868.
  10. Uri Sheyn; Shilo Rosenwasser; Yoav Lehahn; Noa Barak-Gavish; Ron Rotkopf; Kay D. Bidle; Ilan Koren; Daniella Schatz; Assaf Vardi (2018). Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export.  ISME Journal. 2018 Mar , 12 (3):704-713.
  11. Guy Polturak; Uwe Heinig; Noam Grossman; Maor Battat; Dena Leshkowitz; Sergey Malitsky; Ilana Rogachev; Asaph Aharoni (2018). Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa.  Molecular Plant. 2018 Jan , 11 (1):189-204.
  12. Sara W. Feigelson; Adam Solomon; Adi Biram; Miki Hatzav; Moria Lichtenstein; Ofer Regev; Stav Kozlovski; Diana Varol; Caterina Curato; Dena Leshkowitz; Steffen Jung; Ziv Shulman; Ronen Alon (2018). ICAMs Are Not Obligatory for Functional Immune Synapses between Naive CD4 T Cells and Lymph Node DCs.  Cell Reports. 2018 Jan , 22 (4):849-859.
  13. Mariana Schroeder; Mira Jakovcevski; Tamar Polacheck; Yonat Drori; Alessia Luoni; Simone Roeh; Jonas Zaugg; Shifra Ben-Dor; Christiane Albrecht; Alon Chen (2018). Placental miR-340 mediates vulnerability to activity based anorexia in mice.  Nature Communications. 2018 Apr , 9 .
  14. Uri Weill; Ido Yofe; Ehud Sass; Bram Stynen; Dan Davidi; Janani Natarajan; Reut Ben-Menachem; Zohar Avihou; Omer Goldman; Nofar Harpaz; Silvia Chuartzman; Kiril Kniazev; Barbara Knoblach; Janina Laborenz; Felix Boos; Jacqueline Kowarzyk; Shifra Ben-Dor; Einat Zalckvar; Johannes M. Herrmann; Richard A. Rachubinski; Ophry Pines; Doron Rapaport; Stephen W. Michnick; Emmanuel D. Levy; Maya Schuldiner (2018). Genome-wide SWAp-Tag yeast libraries for proteome exploration.  Nature Methods. 2018 Aug , 15 (8):617-622.
  15. Oded Gilad; Orna Steinberg Shemer; Orly Dgany; Tanya Krasnov; Michal Nevo; Sharon Noy-Lotan; Ron Rabinowicz; Nofar Amitai; Shifra Ben-Dor; Isaac Yaniv; Joanne Yacobovich; Hannah Tamary (2017). Molecular diagnosis of α-thalassemia in a multiethnic population.  European Journal of Haematology. 2017 Jun , 98 (6):553-562.
  16. Tal Maaravi; Itai Leven; Ido Azuri; Leeor Kronik; Oded Hod (2017). Interlayer Potential for Homogeneous Graphene and Hexagonal Boron Nitride Systems: Reparametrization for Many-Body Dispersion Effects: Reparametrization for Many-Body Dispersion Effects.  Journal of Physical Chemistry C. 2017 Oct , 121 (41):22826-22835.
  17. Regina Golan-Gerstl; Yaffa Elbaum Shiff; Vardit Moshayoff; Daniel Schecter; Dena Leshkowitz; Shimon Reif (2017). Characterization and biological function of milk-derived miRNAs.  Molecular Nutrition & Food Research. 2017 Oct , 61 (10).
  18. Giora Volpert; Shifra Ben-Dor; Ohad Tarcic; Jingjing Duan; Ann Saada; Alfred H., Jr. Merrill; Yael Pewzner-Jung; Anthony H. Futerman (2017). Oxidative stress elicited by modifying the ceramide acyl chain length reduces the rate of clathrin-mediated endocytosis.  Journal of Cell Science. 2017 Apr , 130 (8):1486-1493.
  19. Nili Tickotsky; Tal Sagiv; Jaime Prilusky; Eric Shifrut; Nir Friedman (2017). McPAS-TCR: a manually curated catalogue of pathology-associated T cell receptor sequences.  Bioinformatics. 2017 Sept , 33 (18):2924-2929.
  20. Reut Yosef; Noam Pilpel; Nurit Papismadov; Hilah Gal; Yossi Ovadya; Ezra Vadai; Stav Miller; Ziv Porat; Shifra Ben-Dor; Valery Krizhanovsky (2017). p21 maintains senescent cell viability under persistent DNA damage response by restraining JNK and caspase signaling.  EMBO Journal. 2017 Aug , 36 (15):2280-2295.