Bioinformatics Publications

  1. Michal Polonsky; Jacob Rimer; Amos Kern-Perets; Irina Zaretsky; Stav Miller; Chamutal Bornstein; Eyal David; Naama Meira Kopelman; Gil Stelzer; Ziv Porat; Benjamin Chain; Nir Friedman (2018). Induction of CD4 T cell memory by local cellular collectivity.  Science. 2018 Jun , 360 (6394):1201-+.
  2. Gabriela Koifman; Yoav Shetzer; Shay Eizenberger; Hilla Solomon; Ron Rotkopf; Alina Molchadsky; Giuseppe Lonetto; Naomi Goldfinger; Varda Rotter (2018). A Mutant p53-Dependent Embryonic Stem Cell Gene Signature Is Associated with Augmented Tumorigenesis of Stem Cells.  Cancer Research. 2018 Oct , 78 (20):5833-5847.
  3. Guy Polturak; Uwe Heinig; Noam Grossman; Maor Battat; Dena Leshkowitz; Sergey Malitsky; Ilana Rogachev; Asaph Aharoni (2018). Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa.  Molecular Plant. 2018 Jan , 11 (1):189-204.
  4. Uri Sheyn; Shilo Rosenwasser; Yoav Lehahn; Noa Barak-Gavish; Ron Rotkopf; Kay D. Bidle; Ilan Koren; Daniella Schatz; Assaf Vardi (2018). Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export.  ISME Journal. 2018 Mar , 12 (3):704-713.
  5. Noa Barak-Gavish; Miguel Jose Frada; Chuan Ku; Peter A. Lee; Giacomo R. DiTullio; Sergey Malitsky; Asaph Aharoni; Stefan J. Green; Ron Rotkopf; Elena Kartvelishvily; Uri Sheyn; Daniella Schatz; Assaf Vardi (2018). Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP.  Science advances. 2018 Oct , 4 (10).
  6. Olga Khersonsky; Rosalie Lipsh; Ziv Avizemer; Yacov Ashani; Moshe Goldsmith; Haim Leader; Orly Dym; Shelly Rogotner; Devin L. Trudeau; Jaime Prilusky; Pep Amengual-Rigo; Victor Guallar; Dan S. Tawfik; Sarel J. Fleishman (2018). Automated Design of Efficient and Functionally Diverse Enzyme Repertoires.  Molecular Cell. 2018 Oct , 72 (1):178-+.
  7. Osnat Malka; Diego Santos-Garcia; Ester Feldmesser; Elad Sharon; Renate Krause-Sakate; Helene Delatte; Sharon van Brunschot; Mitulkumar Patel; Paul Visendi; Habibu Mugerwa; Susan Seal; John Colvin; Shai Morin (2018). Species-complex diversification and host-plant associations in Bemisia tabaci: A plant-defence, detoxification perspective revealed by RNA-Seq analyses.  Molecular Ecology. 2018 Nov , 27 (21):4241-4256.
  8. Sara W. Feigelson; Adam Solomon; Adi Biram; Miki Hatzav; Moria Lichtenstein; Ofer Regev; Stav Kozlovski; Diana Varol; Caterina Curato; Dena Leshkowitz; Steffen Jung; Ziv Shulman; Ronen Alon (2018). ICAMs Are Not Obligatory for Functional Immune Synapses between Naive CD4 T Cells and Lymph Node DCs.  Cell Reports. 2018 Jan , 22 (4):849-859.
  9. Uri Weill; Ido Yofe; Ehud Sass; Bram Stynen; Dan Davidi; Janani Natarajan; Reut Ben-Menachem; Zohar Avihou; Omer Goldman; Nofar Harpaz; Silvia Chuartzman; Kiril Kniazev; Barbara Knoblach; Janina Laborenz; Felix Boos; Jacqueline Kowarzyk; Shifra Ben-Dor; Einat Zalckvar; Johannes M. Herrmann; Richard A. Rachubinski; Ophry Pines; Doron Rapaport; Stephen W. Michnick; Emmanuel D. Levy; Maya Schuldiner (2018). Genome-wide SWAp-Tag yeast libraries for proteome exploration.  Nature Methods. 2018 Aug , 15 (8):617-622.
  10. Hila Wolf-Levy; Aaron Javitt; Avital Eisenberg-Lerner; Assaf Kacenl; Adi Ulman; Daoud Sheban; Bareket Dassa; Vered Fishbain-Yoskovitz; Carmelo Carmona-Rivera; Matthias P. Kramer; Neta Nudel; Ifat Regevl; Liron Zahavi; Dalia Elinger; Mariana J. Kaplan; David Morgenstern; Yishai Levin; Yifat Merbl (2018). Revealing the cellular degradome by mass soectrometry analysis of proteasome-cleaved peptides.  NATURE BIOTECHNOLOGY. 2018 Nov , 36 (11):1110-1116.
  11. Mariana Schroeder; Mira Jakovcevski; Tamar Polacheck; Yonat Drori; Alessia Luoni; Simone Roeh; Jonas Zaugg; Shifra Ben-Dor; Christiane Albrecht; Alon Chen (2018). Placental miR-340 mediates vulnerability to activity based anorexia in mice.  Nature Communications. 2018 Apr , 9 .
  12. Lihi Adler-Abramovich; Zohar A. Arnon; XiaoMeng Sui; Ido Azuri; Hadar Cohen; Oded Hod; Leeor Kronik; Linda J. W. Shimon; H. Daniel Wagner; Ehud Gazit (2018). Bioinspired Flexible and Tough Layered Peptide Crystals.  Advanced Materials. 2018 Feb , 30 (5).
  13. Guy Ledergor; Assaf Weiner; Mor Zada; Shuang-Yin Wang; Yael C. Cohen; Moshe E. Gatt; Nimrod Snir; Hila Magen; Maya Koren-Michowitz; Katrin Herzog-Tzarfati; Hadas Keren-Shaul; Chamutal Bornstein; Ron Rotkopf; Ido Yofe; Eyal David; Venkata Yellapantula; Sigalit Kay; Moshe Salai; Dina Ben Yehuda; Arnon Nagler; Lev Shvidel; Avi Orr-Urtreger; Keren Bahar Halpern; Shalev Itzkovitz; Ola Landgren; Jesus San-Miguel; Bruno Paiva; Jonathan J. Keats; Elli Papaemmanuil; Irit Avivi; Gabriel I. Barbash; Amos Tanay; Ido Amit (2018). Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma.  NATURE MEDICINE. 2018 Dec , 24 (12):1867-+.
  14. Mareen Engel; Carola Eggert; Paul M. Kaplick; Matthias Eder; Simone Roeh; Lisa Tietze; Christian Namendorf; Janine Arloth; Peter Weber; Monika Rex-Haffner; Shay Geula; Mira Jakovcevski; Jacob H. Hanna; Dena Leshkowitz; Manfred Uhr; Carsten T. Wotjak; Mathias V. Schmidt; Jan M. Deussing; Elisabeth B. Binder; Alon Chen (2018). The Role of m(6)A/m-RNA Methylation in Stress Response Regulation.  Neuron. 2018 Jul , 99 (2):389-403.e9.
  15. Ido Azuri; Anna Hirsch; Anthony M. Reilly; Alexandre Tkatchenko; Shai Kendler; Oded Hod; Leeor Kronik (2018). Terahertz spectroscopy of 2,4,6-trinitrotoluene molecular solids from first principles.  Beilstein Journal of Organic Chemistry. 2018 Feb , 14 :381-388.
  16. Savani Anbalagan; Ludmila Gordon; Janna Blechman; Ryota L. Matsuoka; Preethi Rajamannar; Einav Wircer; Jakob Biran; Adriana Reuveny; Dena Leshkowitz; Didier Y. R. Stainier; Gil Levkowitz (2018). Pituicyte Cues Regulate the Development of Permeable Neuro-Vascular Interfaces.  Developmental cell. 2018 Dec , 47 (6):711-726.e5.
  17. Sigal Kfir; Raghavendra Basavaraja; Noa Wigoda; Shifra Ben-Dor; Irit Orr; Rina Meidan (2018). Genomic profiling of bovine corpus luteum maturation.  PLoS One. 2018 Mar , 13 (3).
  18. Gili Ezra-Nevo; Francesca Prestori; Francesca Locatelli; Teresa Soda; Michiel M. ten Brinke; Mareen Engel; Henk-Jan Boele; Laura Botta; Dena Leshkowitz; Assaf Ramot; Michael Tsoory; Inbal E. Biton; Jan Deussing; Egidio D'Angelo; Chris I. De Zeeuw; Alon Chen (2018). Cerebellar Learning Properties Are Modulated by the CRF Receptor.  Journal of Neuroscience. 2018 Jul , 38 (30):6751-6765.
  19. Irina V. Kabakova; Ido Azuri; Zhuoying Chen; Pabitra K. Nayak; Henry J. Snaith; Leeor Kronik; Carl Paterson; Artem A. Bakulin; David A. Egger (2018). The effect of ionic composition on acoustic phonon speeds in hybrid perovskites from Brillouin spectroscopy and density functional theory.  Journal of Materials Chemistry C. 2018 Apr , 6 (15):3861-3868.
  20. Rotem Tidhar; Iris D. Zelnik; Giora Volpert; Shifra Ben-Dor; Samuel Kelly; Alfred H. Merrill; Anthony H. Futerman (2018). Eleven residues determine the acyl chain specificity of ceramide synthases.  Journal of Biological Chemistry. 2018 Jan , 293 (25):9912-9921.