Bioinformatics: LSCF Publications

  1. Moing A., Allwood J. W., Aharoni A., Baker J., Beale M. H., Ben-Dor S., Biais B., Brigante F., Burger Y., Deborde C., Erban A., Faigenboim A., Gur A., Goodacre R., Hansen T. H., Jacob D., Katzir N., Kopka J., Lewinsohn E., Maucourt M., Meir S., Miller S., Mumm R., Oren E., Paris H. S., Rogachev I., Rolin D., Saar U., Schjoerring J. K., Tadmor Y., Tzuri G., de Vos R. C. H., Ward J. L., Yeselson E., Hall R. D. & Schaffer A. A. (2020). Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity.  Metabolites. 2020 Mar , 10 (3).
  2. Amitai M., Taler M., Ben-Baruch R., Lebow M., Rotkopf R., Apter A., Fennig S., Weizman A. & Chen A. (2020). Increased circulatory IL-6 during 8-week fluoxetine treatment is a risk factor for suicidal behaviors in youth.  Brain Behavior And Immunity. 2020 Jul , 87 :301-308.
  3. Shemer A., Scheyltjens I., Frumer G. R., Kim J., Grozovski J., Ayanaw S., Dassa B., Van Hove H., Chappell-Maor L., Boura-Halfon S., Leshkowitz D., Mueller W., Maggio N., Movahedi K. & Jung S. (2020). Interleukin-10 Prevents Pathological Microglia Hyperactivation following Peripheral Endotoxin Challenge.  Immunity. 2020 Oct , .
  4. Elhanani O., Salame T. M., Sobel J., Leshkowitz D., Povodovski L., Vaknin I., Kolodkin-Gal D. & Walker M. D. (2020). REST Inhibits Direct Reprogramming of Pancreatic Exocrine to Endocrine Cells by Preventing PDX1-Mediated Activation of Endocrine Genes.  Cell Reports. 2020 May , 31 (5).
  5. Lorber D., Rotkopf R. & Volk T. (2020). A minimal constraint device for imaging nuclei in live Drosophila contractile larval muscles reveals novel nuclear mechanical dynamics.  Lab on a Chip. 2020 Jun , 20 (12):2100-2112.
  6. Gross-Vered M., Trzebanski S., Shemer A., Bernshtein B., Curato C., Stelzer G., Salame T., David E., Boura-Halfon S., Chappell-Maor L., Leshkowitz D. & Jung S. (2020). Defining murine monocyte differentiation into colonic and ileal macrophages.  eLife. 2020 Jan , 9 .
  7. Eisenberg-Lerner A., Benyair R., Hizkiahou N., Nudel N., Maor R., Kramer M. P., Shmueli M. D., Zigdon I., Lev M. C., Ulman A., Sagiv J. Y., Dayan M., Dassa B., Rosenwald M., Shachar I., Li J., Wang Y., Dezorella N., Khan S., Porat Z., Shimoni E., Avinoam O. & Merbl Y. (2020). Golgi organization is regulated by proteasomal degradation.  Nature Communications. 2020 Jan , 11 (1):409.
  8. Vardi A., Ben-Dor S., Cho S. M., Kalinke U., Spanier J. & Futerman A. H. (2020). Mice defective in interferon signaling help distinguish between primary and secondary pathological pathways in a mouse model of neuronal forms of Gaucher disease.  Journal of Neuroinflammation. 2020 Sept , 17 .
  9. Gross-Vered M., Trzebanski S., Shemer A., Bernshtein B., Curato C., Stelzer G., Salame T., David E., Boura-Halfon S., Chappell-Maor L., Leshkowitz D. & Jung S. (2020). Defining murine monocyte differentiation into colonic and ileal macrophages.  eLife. 2020 Jan , 9 .
  10. Biram A., Winter E., Denton A. E., Zaretsky I., Dassa B., Bemark M., Linterman M. A., Yaari G. & Shulman Z. (2020). B Cell Diversification Is Uncoupled from SAP-Mediated Selection Forces in Chronic Germinal Centers within Peyer's Patches.  Cell Reports. 2020 Feb , 30 (6):1910-1922.
  11. Chen Q., Leshkowitz D., Blechman J. & Levkowitz G. (2020). Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis.  eNeuro. 2020 Jan , 7 (1).
  12. Olshina M. A., Arkind G., Deshmukh F. K., Fainer I., Taranavsky M., Hayat D., Ben-Dor S., Ben-Nissan G. & Sharon M. (2020). Regulation of the 20S Proteasome by a Novel Family of Inhibitory Proteins.  Antioxidants & Redox Signaling. 2020 Jan , 32 (9).
  13. Ku C., Sheyn U., Sebe-Pedros A., Ben-Dor S., Schatz D., Tanay A., Rosenwasser S. & Vardi A. (2020). A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states.  Science advances. 2020 May , 6 (21).
  14. Goldshtein H., Muhire A., Petel Legare V., Pushett A., Rotkopf R., Shefner J. M., Peterson R. T., Armstrong G. A. B. & Russek-Blum N. (2020). Efficacy of Ciprofloxacin/Celecoxib combination in zebrafish models of amyotrophic lateral sclerosis.  Annals of Clinical and Translational Neurology. 2020 Sept , .
  15. Azuri I., Ali M. E., Tarafder K., Oppeneer P. M. & Kronik L. (2020). Fe-porphyrin on Co(001) and Cu(001): A Comparative Dispersion-augmented Density Functional Theory Study.  Israel Journal of Chemistry. 2020 Feb , 60 .
  16. Gonzalez-Beltran A. N., Masuzzo P., Ampe C., Bakker G., Besson S., Eibl R. H., Friedl P., Gunzer M., Kittisopikul M., Le Devedec S. E., Leo S., Moore J., Paran Y., Prilusky J., Rocca-Serra P., Roudot P., Schuster M., Sergeant G., Stromblad S., Swedlow J. R., van Erp M., Van Troys M., Zaritsky A., Sansone S. & Martens L. (2020). Community standards for open cell migration data.  GigaScience. 2020 May , 9 (5).
  17. Zaidman D., Prilusky J. & London N. (2020). PRosettaC: Rosetta based modeling of PROTAC mediated ternary complexes.  Journal of Chemical Information and Modeling. 2020 Sept , .
  18. Ouyang W., Azuri I., Mandelli D., Tkatchenko A., Kronik L., Urbakh M. & Hod O. (2020). Mechanical and Tribological Properties of Layered Materials under High Pressure: Assessing the Importance of Many-Body Dispersion Effects.  Journal of Chemical Theory and Computation. 2020 Jan , 16 (1):666-676.
  19. Davidzohn N., Biram A., Stoler-Barak L., Grenov A., Dassa B. & Shulman Z. (2020). Syk degradation restrains plasma cell formation and promotes zonal transitions in germinal centers.  Journal of Experimental Medicine. 2020 Mar , 217 (3).
  20. Hantisteanu S., Dicken Y., Negreanu V., Goldenberg D., Brenner O., Leshkowitz D., Lotem J., Levanon D. & Groner Y. (2020). Runx3 prevents spontaneous colitis by directing the differentiation of anti-inflammatory mononuclear phagocytes.  PLoS One. 2020 May , 15 (5).