Bioinformatics: LSCF Publications

  1. Stroganov S., Harris T., Alyagor L., Ben Moyal L., Plitman Mayo R., Golani O., Hirsch D., Ben-Dor S., Brandis A., Mehlman T., Kovo M., Biron-Shental T., Dekel N. & Neeman M. (2024). The differential regulation of placenta trophoblast bisphosphoglycerate mutase in fetal growth restriction: preclinical study in mice and observational histological study of human placenta.  eLife. 2024 Feb 5 , 13 .
  2. Sekeresova Kralova J., Donic C., Dassa B., Livyatan I., Jansen P. M., Ben-Dor S., Fidel L., Trzebanski S., Narunsky-Haziza L., Asraf O., Brenner O., Dafni H., Jona G., Boura-Halfon S., Stettner N., Segal E., Brunke S., Pilpel Y., Straussman R., Zeevi D., Bacher P., Hube B., Shlezinger N. & Jung S. (2024). Competitive fungal commensalism mitigates candidiasis pathology.  Journal of Experimental Medicine. 2024 May 6 , 221 (5).
  3. Yado S., Dassa B., Zoabi R., Reich-Zeliger S., Friedman N. & Geiger B. (2024). Molecular mechanisms underlying the modulation of T-cell proliferation and cytotoxicity by immobilized CCL21 and ICAM1.  Journal for ImmunoTherapy of Cancer. 2024 Jun 12 , 12 (6).
  4. Boura-Halfon S., Haffner-Krausz R., Ben-Dor S., Kim J. S. & Jung S. (2024). Tackling Tissue Macrophage Heterogeneity by SplitCre Transgenesis.  . 2024, :481-503.
  5. Sekeresova K. J., Lena F., Catalina D., Shifra B. & Steffen J. (2024). Draft genome of Kazachstania heterogenica var. weizmannii, a commensal fungus of the mouse digestive tract.  Microbiology Resource Announcements. 2024 Apr , 13 (4).
  6. Haque R., Kurien S. P., Setty H., Salzberg Y., Stelzer G., Litvak E., Gingold H., Rechavi O. & Oren-Suissa M. (2024). Sex-Specific Developmental Gene Expression Atlas Unveils Dimorphic Gene Networks in C. elegans.  Nature Communications. 2024 May 20 , 15 (1).
  7. Aram L., de Haan D., Varsano N., Gilchrist J. B., Heintze C., Rotkopf R., Rechav K., Elad N., Kröger N. & Gal A. (2024). Intracellular morphogenesis of diatom silica is guided by local variations in membrane curvature.  Nature Communications. 2024 Sept 10 , 15 .
  8. Kagan Ben Tikva S., Gurwitz N., Sivan E., Hirsch D., Hezroni-Barvyi H., Biram A., Moss L., Wigoda N., Egozi A., Monziani A., Golani O., Gross M., Tenenbaum A. & Shulman Z. (2024). T cell help induces Myc transcriptional bursts in germinal center B cells during positive selection.  Science immunology. 2024 Mar 29 , 9 (93).
  9. Xintian L., Oscar G., Elias A., Bareket D., L. C. D., Joel S. & Rinat A. (2024). Stability and gene strand bias of lambda prophages and chromosome organization in Escherichia coli.  mBio. 2024 Jul 17 , 15 (7):e0207823.
  10. Nevo S., Frenkel N., Kadouri N., Gome T., Rosenthal N., Givony T., Avin A., Peligero Cruz C., Kedmi M., Lindzen M., Ben Dor S., Damari G., Porat Z., Haffner-Krausz R., Keren-Shaul H., Yarden Y., Munitz A., Leshkowitz D., Goldfarb Y. & Abramson J. (2024). Tuft cells and fibroblasts promote thymus regeneration through ILC2-mediated type 2 immune response.  Science Immunology. 2024 Jan , 9 (91).
  11. Nevo S., Frenkel N., Kadouri N., Gome T., Rosenthal N., Givony T., Avin A., Peligero Cruz C., Kedmi M., Lindzen M., Ben Dor S., Damari G., Porat Z., Haffner-Krausz R., Keren-Shaul H., Yarden Y., Munitz A., Leshkowitz D., Goldfarb Y. & Abramson J. (2024). Tuft cells and fibroblasts promote thymus regeneration through ILC2-mediated type 2 immune response.  Science Immunology. 2024 Jan , 9 (91).
  12. de Haan D., Ramos N. H., Meng Y. F., Rotkopf R., Addadi Y., Rosenhek-Goldian I. & Gal A. (2024). Decoupling cell size homeostasis in diatoms from the geometrical constraints of the silica cell wall.  New Phytologist. 2024 Apr 15 , 243 (1):258-270.
  13. Zilkha N., Chuartzman S. G., Fishman R., Ben-Dor S. & Kimchi T. (2024). Maternal high-fat or low-protein diets promote autism-related behavior and altered social behavior within groups in offspring male mice.  Scientific Reports. 2024 Aug 20 , 14 .
  14. Lim L. Q. J., Adler L., Hajaj E., Soria L. R., Perry R. B. T., Darzi N., Brody R., Furth N., Lichtenstein M., Bab-Dinitz E., Porat Z., Melman T., Brandis A., Aylon Y., Ben-Dor S., Orr I., Pri-Or A., Seger R., Shaul Y., Ruppin E., Oren M., Perez M., Meier J., Brunetti-Pierri N., Shema E., Ulitsky I., Erez A., Malitsky S. & Itkin M. (2024). ASS1 metabolically contributes to the nuclear and cytosolic p53-mediated DNA damage response.  Nature metabolism. 2024 Jun 10 , 6 (7):1294-1309.
  15. Algranati D., Oren R., Dassa B., Fellus-Alyagor L., Plotnikov A., Barr H., Harmelin A., London N., Ron G., Furth N. & Shema E. (2024). Dual targeting of histone deacetylases and myc as potential treatment strategy for h3- k27m pediatric gliomas.  eLife. 2024, 13 .
  16. Arbel-Goren R., Dassa B., Zhitnitsky A., Valladares A., Herrero A., Flores E. & Stavans J. (2024). Spatio-temporal coherence of circadian clocks and temporal control of differentiation in Anabaena filaments.  mSystems. 2024 Jan 23 , 9 (1).
  17. Sekeresova Kralova J., Donic C., Dassa B., Livyatan I., Jansen P. M., Ben-Dor S., Fidel L., Trzebanski S., Narunsky-Haziza L., Asraf O., Brenner O., Dafni H., Jona G., Boura-Halfon S., Stettner N., Segal E., Brunke S., Pilpel Y., Straussman R., Zeevi D., Bacher P., Hube B., Shlezinger N. & Jung S. (2024). Competitive fungal commensalism mitigates candidiasis pathology.  Journal of Experimental Medicine. 2024 May 6 , 221 (5).
  18. Yahalom-Ronen Y., Melamed S., Politi B., Erez N., Tamir H., Bar-On L., Ryvkin J., Leshkowitz D., Israeli O., Weiss S., Ben-Shmuel A., Barlev-Gross M., Cherry Mimran L., Achdout H., Paran N. & Israely T. (2024). Induction of Superior Systemic and Mucosal Protective Immunity to SARS-CoV-2 by Nasal Administration of a VSVΔGSpike Vaccine.  Vaccines. 2024 May , 12 (5).
  19. Goldsmith M., Avram L., Brandis A., Mehlman T., Ben-Dor S., Peleg Y., Ben-Zeev E., Barbole R. S. & Reich Z. (2024). LsBOS utilizes oxalyl-CoA produced by LsAAE3 to synthesize β-ODAP in grass pea.  Nature Communications. 2024 Aug 8 , 15 .
  20. Bornstein B., Heinemann-Yerushalmi L., Krief S., Adler R., Dassa B., Leshkowitz D., Kim M., Bewick G., Banks R. W. & Zelzer E. (2023). Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.  eLife. 2023 Feb , 12 .