Bioinformatics: LSCF Publications

  1. Tuval A., Brilon Y., Azogy H., Moskovitz Y., Leshkowitz D., Salame T. M., Minden M. D., Tal P., Rotter V., Oren M., Kaushansky N. & Shlush L. I. (2022). Pseudo-mutant P53 is a unique phenotype of DNMT3A -mutated pre-leukemia.  Haematologica (Roma). 2022 Feb , .
  2. Abou Karam P., Goldian-Rosenheck I., Ziv T., Ben Ami H., Azuri I., Rivkin A., Kiper E., Rotkopf R., Cohen S. R., Torrecilhas A. C., Avinoam O., Rojas A., Morandi M. & Regev-Rudzki N. (2022). Malaria parasites release vesicle subpopulations with signatures of different destinations.  EMBO Reports. 2022 Jun , .
  3. Goldsmith M., Barad S., Knafo M., Savidor A., Ben-Dor S., Brandis A., Mehlman T., Peleg Y., Albeck S., Dym O., Ben-Zeev E., Barbole R. S., Aharoni A. & Reich Z. (2022). Identification and characterization of the key enzyme in the biosynthesis of the neurotoxin β-ODAP in grass pea.  The journal of Biological chemistry. 2022 Mar , .
  4. Ben Ami Pilo H., Khan Khilji S., Lühle J., Biskup K., Levy Gal B., Rosenhek Goldian I., Alfandari D., Revach O., Kiper E., Morandi M. I., Rotkopf R., Porat Z., Blanchard V., Seeberger P. H., Regev‐Rudzki N. & Moscovitz O. (2022). Sialylated N‐glycans mediate monocyte uptake of extracellular vesicles secreted from Plasmodium falciparum‐infected red blood cells.  Journal of Extracellular Biology. 2022 Feb , 1 (2).
  5. Fromm A., Schatz D., Ben-Dor S., Feldmesser E. & Vardi A. (2022). Complete Genome Sequence of Emiliania huxleyi Virus Strain M1, Isolated from an Induced E. huxleyi Bloom in Bergen, Norway.  Microbiology Resource Announcements. 2022 Apr , .
  6. Furth N., Algranati D., Dassa B., Beresh O., Fedyuk V., Morris N., Kasper L. H., Jones D., Monje M., Baker S. J. & Shema E. (2022). H3-K27M-mutant nucleosomes interact with MLL1 to shape the glioma epigenetic landscape.  Cell reports (Cambridge). 2022 May , 39 (7).
  7. Alfandari D., Ben Ami Pilo H., Abou Karam P., Dagan O., Joubran C., Rotkopf R., Regev-Rudzki N. & Porat Z. (2022). Monitoring Distribution Dynamics of EV RNA Cargo Within Recipient Monocytes and Macrophages.  Frontiers in Cellular and Infection Microbiology. 2022 Jan , 11 .
  8. Fromm A., Schatz D., Ben-Dor S., Feldmesser E. & Vardi A. (2022). Complete Genome Sequence of Emiliania huxleyi Virus Strain M1, Isolated from an Induced E. huxleyi Bloom in Bergen, Norway.  Microbiology Resource Announcements. 2022 Apr , .
  9. Dey S., Prilusky J. & Levy E. D. (2022). QSalignWeb: A Server to Predict and Analyze Protein Quaternary Structure.  Frontiers in Molecular Biosciences. 2022 Jan , 8 .
  10. Stepka Z., Azuri I., Horwitz L. K., Chazan M. & Natalio F. A. (2022). Hidden signatures of early fire at Evron Quarry (1.0 to 0.8 Mya).  Proceedings of the National Academy of Sciences of the United States of America. 2022 Jun , 119 (25).
  11. Abou Karam P., Goldian-Rosenheck I., Ziv T., Ben Ami H., Azuri I., Rivkin A., Kiper E., Rotkopf R., Cohen S. R., Torrecilhas A. C., Avinoam O., Rojas A., Morandi M. & Regev-Rudzki N. (2022). Malaria parasites release vesicle subpopulations with signatures of different destinations.  EMBO Reports. 2022 Jun , .
  12. Grunwald Y., Wigoda N., Sade N., Yaaran A., Torne T., Gosa S. C., Moran N. & Moshelion M. (2021). Arabidopsis leaf hydraulic conductance is regulated by xylem sap pH, controlled, in turn, by a P-type H + -ATPase of vascular bundle sheath cells.  The Plant journal : for cell and molecular biology. 2021 Apr , 106 (2):301-313.
  13. Ofir-Birin Y., Ben Ami Pilo H., Camacho A. C., Rudik A., Rivkin A., Revach O., Nir N., Tamin T. B., Karam P. A., Kiper E., Peleg Y., Nevo R., Solomon A., Havkin-Solomon T., Rojas A., Rotkopf R., Porat Z., Avni D., Schwartz E., Zillinger T., Hartmann G., Di Pizio A., Ben Quashie N., Dikstein R., Gerlic M., Torrecilhas A. C., Levy C., Hoen E. N. M. N., Bowie A. G. & Regev-Rudzki N. (2021). Malaria parasites both repress host CXCL10 and use it as a cue for growth acceleration.  Nature Communications. 2021 Aug , 12 .
  14. Graff van Creveld S., Ben-Dor S., Mizrachi A., Alcolombri U., Hopes A., Mock T., Rosenwasser S. & Vardi A. (2021). Biochemical Characterization of a Novel Redox-Regulated Metacaspase in a Marine Diatom.  Frontiers in Microbiology. 2021 Sept , 12 .
  15. Goldfarb Y., Givony T., Kadouri N., Dobeš J., Peligero-Cruz C., Zalayat I., Damari G., Dassa B., Ben-Dor S., Gruper Y., Oftedal B. E., Bratland E., Erichsen M. M., Berger A., Avin A., Nevo S., Haljasorg U., Kuperman Y., Ulman A., Porat Z., Haffner-Krausz R., Atasoy U., Leshkowitz D., Husebye E. S. & Abramson J. (2021). Mechanistic dissection of dominant AIRE mutations in mouse models reveals AIRE autoregulation.  The Journal of experimental medicine. 2021 Nov , 218 (11).
  16. Castro C., Johnson R. J., Kieffer B., Means J. A., Taylor A., Telford J., Thompson L. K., Sussman J. L., Prilusky J. & Theis K. (2021). A practical guide to teaching with Proteopedia.  Biochemistry and Molecular Biology Education. 2021 Jun , .
  17. Feldmesser E., Ben-Dor S. & Vardi A. (2021). An Emiliania huxleyi pan-transcriptome reveals basal strain specificity in gene expression patterns.  Scientific Reports. 2021 Oct , 11 (1).
  18. Gerbi H., Paudel I., Zisovich A., Sapir G., Ben-Dor S. & Klein T. (2021). Physiological drought resistance mechanisms in wild species vs. rootstocks of almond and plum.  Trees (Berlin, West). 2021 Nov , 2021 .
  19. Benjamin A., Kuperman Y., Eren N., Rotkopf R., Amitai M., Rossman H., Shilo S., Meir T., Keshet A., Nuttman-Shwartz O., Segal E. & Chen A. (2021). Stress-related emotional and behavioural impact following the first COVID-19 outbreak peak.  Molecular Psychiatry. 2021 Nov , 26 (11):6149-6158.
  20. Peri A., Greenstein E., Alon M., Pai J. A., Dingjan T., Reich-Zeliger S., Barnea E., Barbolin C., Levy R., Arnedo-Pac C., Kalaora S., Dassa B., Feldmesser E., Shang P., Greenberg P., Levin Y., Benedek G., Levesque M. P., Adams D. J., Lotem M., Wilmott J. S., Scolyer R. A., Jönsson G. B., Admon A., Rosenberg S. A., Cohen C. J., Niv M. Y., Lopez-Bigas N., Satpathy A. T., Friedman N. & Samuels Y. (2021). Combined presentation and immunogenicity analysis reveals a recurrent RAS.Q61K neoantigen in melanoma.  The Journal of Clinical Investigation. 2021 Oct , 131 (20).