MICC Cell Observatory Publications

  1. Lopez R., Li B., Keren-Shaul H., Boyeau P., Kedmi M., Pilzer D., Jelinski A., Yofe I., David E., Wagner A., Ergen C., Addadi Y., Golani O., Ronchese F., Jordan M. I., Amit I. & Yosef N. (2022). DestVI identifies continuums of cell types in spatial transcriptomics data.  Nature biotechnology. 2022 Apr , .
  2. Lopez R., Li B., Keren-Shaul H., Boyeau P., Kedmi M., Pilzer D., Jelinski A., Yofe I., David E., Wagner A., Ergen C., Addadi Y., Golani O., Ronchese F., Jordan M. I., Amit I. & Yosef N. (2022). DestVI identifies continuums of cell types in spatial transcriptomics data.  Nature biotechnology. 2022 Apr , .
  3. Mazor R. D., Nathan N., Gilboa A., Stoler-Barak L., Moss L., Solomonov I., Hanuna A., Divinsky Y., Shmueli M. D., Hezroni H., Zaretsky I., Mor M., Golani O., Sabah G., Jakobson-Setton A., Yanichkin N., Feinmesser M., Tsoref D., Salman L., Yeoshoua E., Peretz E., Erlich I., Mendelson Cohen N., Gershoni J. M., Freund N., Merbl Y., Yaari G., Eitan R., Sagi I. & Shulman Z. (2022). Tumor-reactive antibodies evolve from non-binding and autoreactive precursors.  Cell. 2022 Mar , .
  4. Cohen D., Mashiach R., Houben L., Galisova A., Addadi Y., Kain D., Lubart A., Blinder P., Allouche-Arnon H. & Bar-Shir A. (2021). Glyconanofluorides as Immunotracers with a Tunable Core Composition for Sensitive Hotspot Magnetic Resonance Imaging of Inflammatory Activity.  ACS Nano. 2021 Apr , 15 (4):7563-7574.
  5. Roncato F., Regev O., Feigelson S. W., Yadav S. K., Kaczmarczyk L., Levi N., Drago-Garcia D., Ovadia S., Kizner M., Addadi Y., Sabino J. C., Ovadya Y., de Almeida S. F., Feldmesser E., Gerlitz G. & Alon R. (2021). Reduced Lamin A/C Does Not Facilitate Cancer Cell Transendothelial Migration but Compromises Lung Metastasis.  Cancers. 2021 May , 13 (10).
  6. Singh V., Houben L., Shimon L. J. W., Cohen S. R., Golani O., Feldman Y., Lahav M. & van der Boom M. E. (2021). Unusual Surface Texture, Dimensions and Morphology Variations of Chiral and Single Crystals.  Angewandte Chemie (International ed.). 2021 Aug , 60 (33):18256-18264.
  7. Rubin S., Agrawal A., Stegmaier J., Krief S., Felsenthal N., Svorai J., Addadi Y., Villoutreix P., Stern T. & Zelzer E. (2021). Application of 3D MAPs pipeline identifies the morphological sequence chondrocytes undergo and the regulatory role of GDF5 in this process.  Nature Communications. 2021 Sept , 12 (1):1-16.
  8. Barnea Zohar M., Winograd-Katz S., Shalev M., Arman E., Reuven N., Roth L., Golani O., Stein M., Thalji F., Kanaan M., Tuckermann J., Geiger B. & Elson A. (2021). An SNX10-dependent mechanism down-regulates fusion between mature osteoclasts.  Journal of Cell Science. 2021 May , 134 (9).
  9. Maddalena M., Mallel G., Nataraj N. B., Shreberk-Shaked M., Hassin O., Mukherjee S., Arandkar S., Rotkopf R., Kapsack A., Lambiase G., Pellegrino B., Ben-Isaac E., Golani O., Addadi Y., Hajaj E., Eilam R., Straussman R., Yarden Y., Lotem M. & Oren M. (2021). TP53 missense mutations in PDAC are associated with enhanced fibrosis and an immunosuppressive microenvironment.  Proceedings of the National Academy of Sciences - PNAS. 2021 Jun , 118 (23).
  10. Kalaora S., Nagler A., Nejman D., Alon M., Barbolin C., Barnea E., Ketelaars S. L. C., Cheng K., Vervier K., Shental N., Bussi Y., Rotkopf R., Levy R., Benedek G., Trabish S., Dadosh T., Levin-Zaidman S., Geller L. T., Wang K., Greenberg P., Yagel G., Peri A., Fuks G., Bhardwaj N., Reuben A., Hermida L., Johnson S. B., Galloway-Peña J. R., Shropshire W. C., Bernatchez C., Haymaker C., Arora R., Roitman L., Eilam R., Weinberger A., Lotan-Pompan M., Lotem M., Levin Y., Lawley T. D., Adams D. J., Levesque M. P., Besser M. J., Schachter J., Golani O., Segal E., Ruppin E., Kvistborg P., Peterson S. N., Wargo J. A., Straussman R. & Samuels Y. (2021). Identification of bacteria-derived HLA-bound peptides in melanoma.  Nature (London). 2021 Mar , 592 (7852):138-143.
  11. Maddalena M., Mallel G., Nataraj N. B., Shreberk-Shaked M., Hassin O., Mukherjee S., Arandkar S., Rotkopf R., Kapsack A., Lambiase G., Pellegrino B., Ben-Isaac E., Golani O., Addadi Y., Hajaj E., Eilam R., Straussman R., Yarden Y., Lotem M. & Oren M. (2021). TP53 missense mutations in PDAC are associated with enhanced fibrosis and an immunosuppressive microenvironment.  Proceedings of the National Academy of Sciences - PNAS. 2021 Jun , 118 (23).
  12. Pewzner-Jung Y., Joseph T., Blumenreich S., Vardi A., Ferreira N. S., Cho S. M., Eilam R., Tsoory M., Biton I. E., Brumfeld V., Haffner-Krausz R., Brenner O., Sharabi N., Addadi Y., Salame T. M., Rotkopf R., Wigoda N., Yayon N., Merrill A. H., Schiffmann R. & Futerman A. H. (2021). Brain pathology and cerebellar purkinje cell loss in a mouse model of chronic neuronopathic Gaucher disease.  Progress in Neurobiology. 2021 Feb , 197 .
  13. Aguilera-Castrejon A., Shani T., Ghanem N., Itzkovich C., Slomovich S., Tarazi S., Bayerl J., Chugaeva V., Ayyash M., Ashouokhi S., Sheban D., Livnat N., Lasman L., Viukov S., Zerbib M., Addadi Y., Rais Y., Cheng S., Keren-Shaul H., Stelzer Y., Shlomo R., Massarwa R., Novershtern N. & Hanna J. H. (2021). Ex utero mouse embryogenesis from pre-gastrulation to late organogenesis.  Nature (London). 2021 Mar , .
  14. Schiffmann N., Wormser E. M., Brumfeld V., Addadi Y., Pinkas I., Yallapragada V. J., Aflalo E. D., Sagi A., Palmer B. A., Weiner S. & Addadi L. (2020). Characterization and possible function of an enigmatic reflector in the eye of the shrimp Litopenaeus vannamei.  Faraday Discussions. 2020 Oct , 223 :278-294.
  15. Hadas R., Gershon E., Cohen A., Atrakchi O., Lazar S., Golani O., Dassa B., Elbaz M., Cohen G., Eilam R., Dekel N. & Neeman M. (2020). Hyaluronan control of the primary vascular barrier during early mouse pregnancy is mediated by uterine NK cells.  JCI insight. 2020 Nov , 5 (22).
  16. Grosheva I., Zheng D., Levy M., Polansky O., Lichtenstein A., Golani O., Dori-Bachash M., Moresi C., Shapiro H., Del Mare-Roumani S., Valdes-Mas R., He Y., Karbi H., Chen M., Harmelin A., Straussman R., Yissachar N., Elinav E. & Geiger B. (2020). High-Throughput Screen Identifies Host and Microbiota Regulators of Intestinal Barrier Function.  Gastroenterology. 2020 Nov , 159 (5):1807-1823.
  17. Ben Eliezer N., Lysenko M., Biton I. E., Golani O., Bartels J. L., Fernandez S. R., Aweda T. A., Clanton N. A., Beacham R., Lapi S. E., Garbow J. R. & Neeman M. (2020). Novel multimodal molecular imaging of Vitamin H (Biotin) transporter activity in the murine placenta.  Scientific Reports. 2020 Nov , 10 (1).
  18. Bochner F., Mohan V., Zinger A., Golani O., Schroeder A., Sagi I. & Neeman M. (2020). Intravital imaging of vascular anomalies and extracellular matrix remodeling in orthotopic pancreatic tumors.  International Journal of Cancer. 2020 Apr , 146 (8):2209-2217.
  19. Levi-Galibov O., Lavon H., Wassermann-Dozorets R., Pevsner-Fischer M., Mayer S., Wershof E., Stein Y., Brown L. E., Zhang W., Friedman G., Nevo R., Golani O., Katz L. H., Yaeger R., Laish I., Porco J. A., Sahai E., Shouval D. S., Kelsen D. & Scherz-Shouval R. (2020). Heat Shock Factor 1-dependent extracellular matrix remodeling mediates the transition from chronic intestinal inflammation to colon cancer.  Nature Communications. 2020 Dec , 11 (1).
  20. Nejman D., Livyatan I., Fuks G., Gavert N., Zwang Y., Geller L. T., Rotter-Maskowitz A., Weiser R., Mallel G., Gigi E., Meltser A., Douglas G. M., Kamer I., Gopalakrishnan V., Dadosh T., Levin-Zaidman S., Avnet S., Atlan T., Cooper Z. A., Arora R., Cogdill A. P., Khan M. A. W., Ologun G., Bussi Y., Weinberger A., Lotan-Pompan M., Golani O., Perry G., Rokah M., Bahar-Shany K., Rozeman E. A., Blank C. U., Ronai A., Shaoul R., Amit A., Dorfman T., Kremer R., Cohen Z. R., Harnof S., Siegal T., Yehuda-Shnaidman E., Gal-Yam E. N., Shapira H., Baldini N., Langille M. G. I., Ben-Nun A., Kaufman B., Nissan A., Golan T., Dadiani M., Levanon K., Bar J., Yust-Katz S., Barshack I., Peeper D. S., Raz D. J., Segal E., Wargo J. A., Sandbank J., Shental N. & Straussman R. (2020). The human tumor microbiome is composed of tumor type-specific intracellular bacteria.  Science. 2020 May , 368 (6494):973-980.