Bioinformatics: LSCF Publications

  1. Sehrawat U., Koning F., Ashkenazi S., Stelzer G., Leshkowitz D. & Dikstein R. (2019). Cancer-Associated Eukaryotic Translation Initiation Factor 1A Mutants Impair Rps3 and Rps10 Binding and Enhance Scanning of Cell Cycle Genes.  Molecular and Cellular Biology. 2019 Jan , 39 (3).
  2. Zhivin-Nissan O., Dassa B., Morag E., Kupervaser M., Levin Y. & Bayer E. A. (2019). Unraveling essential cellulosomal components of the (Pseudo)Bacteroides cellulosolvens reveals an extensive reservoir of novel catalytic enzymes.  Biotechnology for Biofuels. 2019 May , 12 .
  3. Paudel I., Gerbi H., Zisovich A., Sapir G., Ben-Dor S., Brumfeld V. & Klein T. (2019). Drought tolerance mechanisms and aquaporin expression of wild vs. cultivated pear tree species in the field.  Environmental and Experimental Botany. 2019 Nov , 167 .
  4. Kohen R., Barlev J., Hornung G., Stelzer G., Feldmesser E., Kogan K., Safran M. & Leshkowitz D. (2019). UTAP: User-friendly Transcriptome Analysis Pipeline.  BMC Bioinformatics. 2019 Mar , 20 .
  5. Ezra-Nevo G., Prestori F., Locatelli F., Soda T., ten Brinke M. M., Engel M., Boele H., Botta L., Leshkowitz D., Ramot A., Tsoory M., Biton I. E., Deussing J., D'Angelo E., De Zeeuw C. I. & Chen A. (2018). Cerebellar Learning Properties Are Modulated by the CRF Receptor.  Journal of Neuroscience. 2018 Jul , 38 (30):6751-6765.
  6. Barak-Gavish N., Frada M. J., Ku C., Lee P. A., DiTullio G. R., Malitsky S., Aharoni A., Green S. J., Rotkopf R., Kartvelishvily E., Sheyn U., Schatz D. & Vardi A. (2018). Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP.  Science advances. 2018 Oct , 4 (10).
  7. Furth N., Pateras I. S., Rotkopf R., Vlachou V., Rivkin I., Schmitt I., Bakaev D., Gershoni A., Ainbinder E., Leshkowitz D., Johnson R. L., Gorgoulis V. G., Oren M. & Aylon Y. (2018). LATS1 and LATS2 suppress breast cancer progression by maintaining cell identity and metabolic state.  Life science alliance. 2018 Oct , 1 (5).
  8. Azuri I., Hirsch A., Reilly A. M., Tkatchenko A., Kendler S., Hod O. & Kronik L. (2018). Terahertz spectroscopy of 2,4,6-trinitrotoluene molecular solids from first principles.  Beilstein Journal of Organic Chemistry. 2018 Feb , 14 :381-388.
  9. Kfir S., Basavaraja R., Wigoda N., Ben-Dor S., Orr I. & Meidan R. (2018). Genomic profiling of bovine corpus luteum maturation.  PLoS One. 2018 Mar , 13 (3):e0194456.
  10. Wolf Y., Shemer A., Levy-Efrati L., Gross M., Kim J., Engel A., David E., Chappell-Maor L., Grozovski J., Rotkopf R., Biton I., Eilam-Altstadter R. & Jung S. (2018). Microglial MHC class II is dispensable for experimental autoimmune encephalomyelitis and cuprizone-induced demyelination.  European Journal of Immunology. 2018 Aug , 48 (8):1308-1318.
  11. Malka O., Santos-Garcia D., Feldmesser E., Sharon E., Krause-Sakate R., Delatte H., van Brunschot S., Patel M., Visendi P., Mugerwa H., Seal S., Colvin J. & Morin S. (2018). Species-complex diversification and host-plant associations in Bemisia tabaci: A plant-defence, detoxification perspective revealed by RNA-Seq analyses.  Molecular Ecology. 2018 Nov , 27 (21):4241-4256.
  12. Furth N., Pateras I. S., Rotkopf R., Vlachou V., Rivkin I., Schmitt I., Bakaev D., Gershoni A., Ainbinder E., Leshkowitz D., Johnson R. L., Gorgoulis V. G., Oren M. & Aylon Y. (2018). LATS1 and LATS2 suppress breast cancer progression by maintaining cell identity and metabolic state.  Life science alliance. 2018 Oct , 1 (5).
  13. Tidhar R., Zelnik I. D., Volpert G., Ben-Dor S., Kelly S., Merrill A. H. & Futerman A. H. (2018). Eleven residues determine the acyl chain specificity of ceramide synthases.  Journal of Biological Chemistry. 2018 Jan , 293 (25):9912-9921.
  14. Wolf-Levy H., Javitt A., Eisenberg-Lerner A., Kacenl A., Ulman A., Sheban D., Dassa B., Fishbain-Yoskovitz V., Carmona-Rivera C., Kramer M. P., Nudel N., Regevl I., Zahavi L., Elinger D., Kaplan M. J., Morgenstern D., Levin Y. & Merbl Y. (2018). Revealing the cellular degradome by mass soectrometry analysis of proteasome-cleaved peptides.  Nature Biotechnology. 2018 Nov , 36 (11):1110-1116.
  15. Polonsky M., Rimer J., Kern-Perets A., Zaretsky I., Miller S., Bornstein C., David E., Kopelman N. M., Stelzer G., Porat Z., Chain B. & Friedman N. (2018). Induction of CD4 T cell memory by local cellular collectivity.  Science. 2018 Jun , 360 (6394):1201-+.
  16. Sheyn U., Rosenwasser S., Lehahn Y., Barak-Gavish N., Rotkopf R., Bidle K. D., Koren I., Schatz D. & Vardi A. (2018). Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export.  ISME Journal. 2018 Mar , 12 (3):704-713.
  17. Khersonsky O., Lipsh R., Avizemer Z., Ashani Y., Goldsmith M., Leader H., Dym O., Rogotner S., Trudeau D. L., Prilusky J., Amengual-Rigo P., Guallar V., Tawfik D. S. & Fleishman S. J. (2018). Automated Design of Efficient and Functionally Diverse Enzyme Repertoires.  Molecular Cell. 2018 Oct , 72 (1):178-186.e5.
  18. Ledergor G., Weiner A., Zada M., Wang S., Cohen Y. C., Gatt M. E., Snir N., Magen H., Koren-Michowitz M., Herzog-Tzarfati K., Keren-Shaul H., Bornstein C., Rotkopf R., Yofe I., David E., Yellapantula V., Kay S., Salai M., Ben Yehuda D., Nagler A., Shvidel L., Orr-Urtreger A., Halpern K. B., Itzkovitz S., Landgren O., San-Miguel J., Paiva B., Keats J. J., Papaemmanuil E., Avivi I., Barbash G. I., Tanay A. & Amit I. (2018). Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma.  Nature Medicine. 2018 Dec , 24 (12):1867-+.
  19. Anbalagan S., Gordon L., Blechman J., Matsuoka R. L., Rajamannar P., Wircer E., Biran J., Reuveny A., Leshkowitz D., Stainier D. Y. R. & Levkowitz G. (2018). Pituicyte Cues Regulate the Development of Permeable Neuro-Vascular Interfaces.  Developmental Cell. 2018 Dec , 47 (6):711-726.e5.
  20. Polturak G., Heinig U., Grossman N., Battat M., Leshkowitz D., Malitsky S., Rogachev I. & Aharoni A. (2018). Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa.  Molecular Plant. 2018 Jan , 11 (1):189-204.