Bioinformatics: LSCF Publications

  1. Givony T., Leshkowitz D., Del Castillo D., Nevo S., Kadouri N., Dassa B., Gruper Y., Khalaila R., Ben-Nun O., Gome T., Dobeš J., Ben-Dor S., Kedmi M., Keren-Shaul H., Heffner-Krausz R., Porat Z., Golani O., Addadi Y., Brenner O., Lo D. D., Goldfarb Y. & Abramson J. (2023). Thymic mimetic cells function beyond self-tolerance.  Nature. 2023 Oct 5 , 622 (7981):164–172.
  2. Leshkowitz D., Kedmi M., Fried Y., Pilzer D., Keren-Shaul H., Ainbinder E. & Dassa B. (2022). Exploring differential exon usage via short- and long-read RNA sequencing strategies.  Open Biology. 2022 Sept 28 , 12 (9).
  3. Fromm A., Schatz D., Ben-Dor S., Feldmesser E. & Vardi A. (2022). Complete Genome Sequence of Emiliania huxleyi Virus Strain M1, Isolated from an Induced E. huxleyi Bloom in Bergen, Norway.  Microbiology Resource Announcements. 2022 May , 11 (5).
  4. Kim J., Pewzner-Jung Y., Joseph T., Ben-Dor S. & Futerman A. H. (2022). Generation of a ceramide synthase 6 mouse lacking the DDRSDIE C-terminal motif.  PLoS ONE. 2022 Jul 18 , 17 (7).
  5. Eitan C., Siany A., Barkan E., Olender T., Yanowski E., Marmor-Kollet H., Chapnik E., Ainbinder E., Ben-Dor S., Segal E. & Hornstein E. (2022). Whole-genome sequencing reveals that variants in the Interleukin 18 Receptor Accessory Protein 3′UTR protect against ALS.  Nature Neuroscience. 2022 Apr , 25 (4):433-445.
  6. Stepka Z., Azuri I., Horwitz L. K., Chazan M. & Natalio F. A. (2022). Hidden signatures of early fire at Evron Quarry (1.0 to 0.8 Mya).  Proceedings of the National Academy of Sciences of the United States of America. 2022 Jun 13 , 119 (25).
  7. Regev O., Kizner M., Roncato F., Dadiani M., Saini M., Castro-Giner F., Yajuk O., Kozlovski S., Levi N., Addadi Y., Golani O., Ben-Dor S., Granot Z., Aceto N. & Alon R. (2022). ICAM-1 on Breast Cancer Cells Suppresses Lung Metastasis but Is Dispensable for Tumor Growth and Killing by Cytotoxic T Cells.  Frontiers in Immunology. 2022 Jul 11 , 13 .
  8. Hassin O., Nataraj N. B., Shreberk-Shaked M., Aylon Y., Yaeger R., Fontemaggi G., Mukherjee S., Maddalena M., Avioz A., Iancu O., Mallel G., Gershoni A., Grosheva I., Feldmesser E., Ben-Dor S., Golani O., Hendel A., Blandino G., Kelsen D., Yarden Y. & Oren M. (2022). Different hotspot p53 mutants exert distinct phenotypes and predict outcome of colorectal cancer patients.  Nature Communications. 2022 May 19 , 13 (1).
  9. Tuval A., Brilon Y., Azogy H., Moskovitz Y., Leshkowitz D., Salame T. M., Minden M. D., Tal P., Rotter V., Oren M., Kaushansky N. & Shlush L. I. (2022). Pseudo-mutant P53 is a unique phenotype of DNMT3Amutated pre-leukemia.  Haematologica. 2022 Nov , 107 (11):2548-2561.
  10. Abou Karam P., Goldian-Rosenheck I., Ziv T., Ben Ami H., Azuri I., Rivkin A., Kiper E., Rotkopf R., Cohen S. R., Torrecilhas A. C., Avinoam O., Rojas A., Morandi M. & Regev-Rudzki N. (2022). Malaria parasites release vesicle subpopulations with signatures of different destinations.  EMBO Reports. 2022 Jun 1 , 23 (7).
  11. Kim J. L., Ben-Dor S., Rosenfeld-Gur E. & Futerman A. H. (2022). A novel C-terminal DxRSDxE motif in ceramide synthases involved in dimer formation.  Journal of Biological Chemistry. 2022 Feb 1 , 298 (2).
  12. Sehrawat U., Haimov O., Weiss B., Tamarkin-Ben Harush A., Ashkenazi S., Plotnikov A., Noiman T., Leshkowitz D., Stelzer G. & Dikstein R. (2022). Inhibitors of eIF4G1-eIF1 uncover its regulatory role of ER/UPR stress-response genes independent of eIF2a-phosphorylation.  Proceedings of the National Academy of Sciences - PNAS. 2022 Jul 20 , 119 (30).
  13. Haimon Z., Frumer G. R., Kim J., Trzebanski S., Haffner-Krausz R., Ben-Dor S., Porat Z., Muschaweckh A., Chappell-Maor L., Boura-Halfon S., Korn T. & Jung S. (2022). Cognate microglia–T cell interactions shape the functional regulatory T cell pool in experimental autoimmune encephalomyelitis pathology.  Nature Immunology. 2022 Dec , 23 (12):1749-1762.
  14. Alfandari D., Ben Ami Pilo H., Abou Karam P., Dagan O., Joubran C., Rotkopf R., Regev-Rudzki N. & Porat Z. (2022). Monitoring Distribution Dynamics of EV RNA Cargo Within Recipient Monocytes and Macrophages.  Frontiers in Cellular and Infection Microbiology. 2022 Jan 26 , 11 .
  15. Abou Karam P., Goldian-Rosenheck I., Ziv T., Ben Ami H., Azuri I., Rivkin A., Kiper E., Rotkopf R., Cohen S. R., Torrecilhas A. C., Avinoam O., Rojas A., Morandi M. & Regev-Rudzki N. (2022). Malaria parasites release vesicle subpopulations with signatures of different destinations.  EMBO Reports. 2022 Jun 1 , 23 (7).
  16. Sehrawat U., Haimov O., Weiss B., Tamarkin-Ben Harush A., Ashkenazi S., Plotnikov A., Noiman T., Leshkowitz D., Stelzer G. & Dikstein R. (2022). Inhibitors of eIF4G1-eIF1 uncover its regulatory role of ER/UPR stress-response genes independent of eIF2a-phosphorylation.  Proceedings of the National Academy of Sciences - PNAS. 2022 Jul 20 , 119 (30).
  17. Dey S., Prilusky J. & Levy E. D. (2022). QSalignWeb: A Server to Predict and Analyze Protein Quaternary Structure.  Frontiers in Molecular Biosciences. 2022 Jan 5 , 8 .
  18. Goldsmith M., Barad S., Knafo M., Savidor A., Ben-Dor S., Brandis A., Mehlman T., Peleg Y., Albeck S., Dym O., Ben-Zeev E., Barbole R. S., Aharoni A. & Reich Z. (2022). Identification and characterization of the key enzyme in the biosynthesis of the neurotoxin β-ODAP in grass pea.  The journal of Biological chemistry. 2022 May 1 , 298 (5).
  19. Cohen M., Hertweck K., Itkin M., Malitsky S., Dassa B., Fischer A. M. & Fluhr R. (2022). Enhanced proteostasis, lipid remodeling, and nitrogen remobilization define barley flag leaf senescence.  Journal of Experimental Botany. 2022 Nov 2 , 73 (19):6816-6837.
  20. Gerbi H., Paudel I., Zisovich A., Sapir G., Ben-Dor S. & Klein T. (2022). Physiological drought resistance mechanisms in wild species vs. rootstocks of almond and plum.  Trees (Berlin, West). 2022 Apr , 36 :669-683.